Wall clock time and date at job start Tue Mar 31 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99982 * 2 1 4 4 H 1.48504 * 109.47070 * 274.99409 * 3 2 1 5 5 H 1.48497 * 109.47377 * 34.99369 * 3 2 1 6 6 H 1.48497 * 109.47019 * 154.99926 * 3 2 1 7 7 C 1.38813 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00038 * 174.96308 * 7 2 1 9 9 N 1.36930 * 120.00085 * 354.96025 * 7 2 1 10 10 C 1.46498 * 119.99998 * 185.24974 * 9 7 2 11 11 C 1.52999 * 112.90628 * 44.74345 * 10 9 7 12 12 N 1.46504 * 109.47073 * 72.13723 * 11 10 9 13 13 C 1.34777 * 119.99452 * 184.92153 * 12 11 10 14 14 O 1.21276 * 120.00514 * 4.96478 * 13 12 11 15 15 C 1.50704 * 119.99396 * 184.96847 * 13 12 11 16 16 C 1.53003 * 112.85010 * 55.65307 * 15 13 12 17 17 F 1.39903 * 109.46970 * 294.48962 * 16 15 13 18 18 C 1.53782 * 113.61667 * 284.33899 * 15 13 12 19 19 C 1.53781 * 87.08364 * 220.02123 * 18 15 13 20 20 C 1.53780 * 113.61335 * 186.84208 * 15 13 12 21 21 C 1.53782 * 113.61815 * 273.48773 * 10 9 7 22 22 C 1.53774 * 87.08194 * 270.88525 * 21 10 9 23 23 C 1.53781 * 87.08474 * 334.56369 * 22 21 10 24 24 H 0.97006 * 119.99655 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00436 * 5.25533 * 9 7 2 26 26 H 1.09007 * 109.46888 * 192.13363 * 11 10 9 27 27 H 1.08996 * 109.47247 * 312.13085 * 11 10 9 28 28 H 0.96998 * 120.00052 * 4.91465 * 12 11 10 29 29 H 1.08997 * 109.47399 * 54.49368 * 16 15 13 30 30 H 1.09000 * 109.46994 * 174.49766 * 16 15 13 31 31 H 1.08999 * 113.61000 * 334.57352 * 18 15 13 32 32 H 1.09000 * 113.60808 * 105.47320 * 18 15 13 33 33 H 1.08999 * 113.61147 * 270.88512 * 19 18 15 34 34 H 1.08990 * 113.61391 * 139.98365 * 19 18 15 35 35 H 1.08998 * 113.61805 * 254.53188 * 20 15 13 36 36 H 1.09003 * 113.61177 * 25.43746 * 20 15 13 37 37 H 1.08999 * 113.60886 * 25.43828 * 21 10 9 38 38 H 1.09002 * 113.61316 * 156.33561 * 21 10 9 39 39 H 1.09003 * 113.61139 * 220.01478 * 22 21 10 40 40 H 1.08999 * 113.61601 * 89.11924 * 22 21 10 41 41 H 1.08992 * 113.61670 * 270.88457 * 23 22 21 42 42 H 1.08998 * 113.61351 * 139.98043 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2041 -0.0816 9 7 1.3295 -2.3857 0.1052 10 6 2.0662 -3.6466 0.2217 11 6 3.2276 -3.5683 1.2146 12 7 2.6999 -3.5179 2.5804 13 6 3.5389 -3.3457 3.6210 14 8 4.7179 -3.1425 3.4222 15 6 3.0119 -3.4057 5.0316 16 6 2.2739 -4.7112 5.3350 17 9 1.1153 -4.7842 4.5542 18 6 2.2382 -2.1457 5.4544 19 6 2.9259 -2.2784 6.8234 20 6 4.0554 -3.0265 6.0956 21 6 2.4548 -4.2605 -1.1337 22 6 1.1001 -4.9876 -1.1039 23 6 1.1607 -4.8723 0.4284 24 1 -0.4850 0.8401 -0.0004 25 1 0.3595 -2.3893 0.1022 26 1 3.8616 -4.4479 1.1023 27 1 3.8137 -2.6705 1.0181 28 1 1.7467 -3.6083 2.7356 29 1 2.9215 -5.5569 5.1041 30 1 2.0029 -4.7385 6.3905 31 1 2.5285 -1.2503 4.9048 32 1 1.1584 -2.2889 5.4925 33 1 2.3755 -2.8994 7.5301 34 1 3.2376 -1.3249 7.2497 35 1 4.4425 -3.8804 6.6515 36 1 4.8424 -2.3717 5.7214 37 1 2.5398 -3.5281 -1.9364 38 1 3.3119 -4.9318 -1.0793 39 1 1.1476 -6.0143 -1.4668 40 1 0.2879 -4.4161 -1.5531 41 1 1.6639 -5.7108 0.9097 42 1 0.2009 -4.6338 0.8866 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754987046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:22 Heat of formation + Delta-G solvation = -61.396760 kcal Electronic energy + Delta-G solvation = -23883.913149 eV Core-core repulsion = 20392.811793 eV Total energy + Delta-G solvation = -3491.101357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.64816 -41.46161 -40.29872 -38.55564 -35.37705 -35.19920 -32.00768 -30.26485 -28.51972 -26.66811 -26.62479 -26.00536 -25.28050 -23.14710 -21.84322 -20.06233 -19.61530 -19.19462 -18.46649 -17.26141 -16.91487 -16.83747 -16.51450 -16.38001 -16.05510 -15.82269 -15.45053 -15.22032 -14.95266 -14.88445 -14.30151 -13.69883 -13.45653 -13.18874 -13.05891 -13.04470 -12.97578 -12.81359 -12.70727 -12.29145 -12.24896 -12.02976 -11.99225 -11.52375 -11.46076 -11.37093 -11.32972 -10.91378 -10.90544 -10.55665 -9.94991 -9.00731 -7.97731 -5.23593 1.39316 1.40989 1.49131 1.59865 2.29178 2.50541 3.25833 3.33593 3.39745 3.50929 3.71288 3.78919 3.80309 3.81760 3.98122 4.03725 4.10738 4.23947 4.28354 4.43183 4.63179 4.71506 4.74446 4.80116 4.82165 4.85716 4.89404 4.96800 5.02495 5.07228 5.11250 5.12348 5.29335 5.39719 5.42583 5.50678 5.61238 5.68319 6.26377 6.63350 7.27117 7.32847 8.06718 8.30827 9.24926 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013065 B = 0.006804 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.568540 B = 4114.448384 C = 5314.035534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.064 4.064 3 Si 0.954 3.046 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.223 4.223 8 H 0.063 0.937 9 N -0.704 5.704 10 C 0.159 3.841 11 C 0.131 3.869 12 N -0.698 5.698 13 C 0.514 3.486 14 O -0.590 6.590 15 C -0.148 4.148 16 C 0.091 3.909 17 F -0.222 7.222 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.103 4.103 21 C -0.157 4.157 22 C -0.121 4.121 23 C -0.130 4.130 24 H 0.250 0.750 25 H 0.377 0.623 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.407 0.593 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -13.199 12.913 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.257 4.257 3 Si 0.785 3.215 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.355 4.355 8 H 0.081 0.919 9 N -0.343 5.343 10 C 0.068 3.932 11 C 0.005 3.995 12 N -0.347 5.347 13 C 0.301 3.699 14 O -0.471 6.471 15 C -0.151 4.151 16 C 0.036 3.964 17 F -0.203 7.203 18 C -0.167 4.167 19 C -0.159 4.159 20 C -0.140 4.140 21 C -0.197 4.197 22 C -0.158 4.158 23 C -0.168 4.168 24 H 0.059 0.941 25 H 0.210 0.790 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.244 0.756 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.962 -12.935 12.734 18.578 hybrid contribution -0.319 1.599 -0.728 1.786 sum 3.643 -11.335 12.006 16.909 Atomic orbital electron populations 1.69785 1.05986 1.25727 1.59517 1.25297 0.96174 1.00093 1.04137 0.85412 0.77660 0.81176 0.77292 1.21455 1.21911 1.20859 1.19279 0.91163 0.85135 1.39932 0.91907 1.42120 1.04935 1.00438 1.86830 1.21126 0.91976 0.86522 0.93611 1.21539 0.96513 0.99953 0.81501 1.45921 1.11326 1.71548 1.05917 1.20942 0.85819 0.75361 0.87771 1.90620 1.18527 1.51246 1.86749 1.23017 1.01349 0.99228 0.91534 1.21923 0.82672 0.94942 0.96838 1.92743 1.52340 1.97270 1.77961 1.22886 1.00390 0.94854 0.98563 1.22892 0.96111 1.01913 0.94989 1.22727 0.95716 1.01471 0.94124 1.23543 0.98320 0.99467 0.98415 1.22573 0.96781 1.00590 0.95848 1.23173 0.99446 0.96979 0.97233 0.94083 0.78956 0.91076 0.94811 0.75621 0.88825 0.85684 0.92308 0.89791 0.86534 0.90218 0.87984 0.91068 0.93635 0.88795 0.89362 0.91970 0.87809 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.86 13.07 21.65 0.28 -57.58 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.95 47.68 29.56 68.60 2.03 49.71 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.22 -12.35 9.28 84.03 0.78 -11.57 16 8 H 0.06 3.54 6.68 -2.91 -0.02 3.52 16 9 N -0.70 -34.15 5.28 -300.96 -1.59 -35.74 16 10 C 0.16 6.05 1.01 4.13 0.00 6.06 16 11 C 0.13 5.05 4.99 86.38 0.43 5.49 16 12 N -0.70 -25.19 5.23 -463.05 -2.42 -27.61 16 13 C 0.51 18.21 6.85 87.66 0.60 18.81 16 14 O -0.59 -25.17 15.95 -3.02 -0.05 -25.22 16 15 C -0.15 -3.67 1.02 -52.40 -0.05 -3.73 16 16 C 0.09 1.63 6.73 71.98 0.48 2.11 16 17 F -0.22 -5.27 15.60 44.97 0.70 -4.57 16 18 C -0.13 -3.23 7.18 31.12 0.22 -3.00 16 19 C -0.12 -2.05 7.73 31.12 0.24 -1.81 16 20 C -0.10 -2.13 6.95 31.12 0.22 -1.91 16 21 C -0.16 -5.31 7.43 31.12 0.23 -5.08 16 22 C -0.12 -3.58 7.99 31.12 0.25 -3.33 16 23 C -0.13 -3.93 6.72 31.12 0.21 -3.72 16 24 H 0.25 14.75 8.31 -92.70 -0.77 13.97 16 25 H 0.38 19.65 7.86 -92.71 -0.73 18.92 16 26 H 0.07 2.46 7.93 -2.38 -0.02 2.44 16 27 H 0.03 1.57 6.52 -2.39 -0.02 1.56 16 28 H 0.41 14.29 6.51 -92.71 -0.60 13.69 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.13 1.30 7.32 -2.39 -0.02 1.28 16 31 H 0.06 1.85 8.09 -2.39 -0.02 1.83 16 32 H 0.08 2.00 8.09 -2.39 -0.02 1.98 16 33 H 0.12 1.22 7.61 -2.39 -0.02 1.21 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.51 8.10 -2.39 -0.02 1.50 16 36 H 0.07 1.90 7.53 -2.39 -0.02 1.88 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 2.68 7.95 -2.39 -0.02 2.66 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.10 2.62 8.10 -2.39 -0.02 2.60 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -69.69 340.82 2.73 -66.96 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -0.30 Total: 38.96 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.08 Total: -4.92 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -3.73 Total: -120.93 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.70 Total: -4.57 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -69.69 2.73 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754987046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.560 kcal (2) G-P(sol) polarization free energy of solvation -69.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds