Wall clock time and date at job start Tue Mar 31 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 N 1.46901 * 109.47688 * 120.00179 * 2 1 3 5 5 C 1.46900 * 110.99682 * 307.27150 * 4 2 1 6 6 C 1.50698 * 109.46882 * 287.33437 * 5 4 2 7 7 H 1.07998 * 120.00223 * 356.56978 * 6 5 4 8 8 C 1.37877 * 120.00073 * 176.56142 * 6 5 4 9 9 N 1.31520 * 119.99672 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00322 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47081 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47233 * 120.00022 * 10 8 6 13 13 H 1.48501 * 109.47498 * 240.00403 * 10 8 6 14 14 C 1.46898 * 110.99788 * 71.22045 * 4 2 1 15 15 C 1.50700 * 109.47240 * 75.18108 * 14 4 2 16 16 C 1.36109 * 120.12926 * 254.25057 * 15 14 4 17 17 C 1.39310 * 121.06814 * 180.27662 * 16 15 14 18 18 C 1.36173 * 120.86817 * 359.49530 * 17 16 15 19 19 C 1.40389 * 119.61567 * 0.47725 * 18 17 16 20 20 C 1.40771 * 121.38426 * 179.75583 * 19 18 17 21 21 C 1.36571 * 118.15786 * 180.02562 * 20 19 18 22 22 C 1.39340 * 119.93198 * 0.02562 * 21 20 19 23 23 N 1.31082 * 121.75884 * 0.02562 * 22 21 20 24 24 C 1.33691 * 121.31920 * 359.95489 * 23 22 21 25 25 H 1.09000 * 109.46934 * 309.27130 * 1 2 3 26 26 H 1.08995 * 109.47254 * 69.27985 * 1 2 3 27 27 H 1.09002 * 109.46792 * 189.27475 * 1 2 3 28 28 H 1.09005 * 109.47258 * 240.00379 * 2 1 3 29 29 H 1.08998 * 109.47188 * 172.22381 * 3 2 1 30 30 H 1.08999 * 109.46807 * 292.22294 * 3 2 1 31 31 H 1.09004 * 109.46616 * 52.22437 * 3 2 1 32 32 H 1.08999 * 109.47395 * 47.33949 * 5 4 2 33 33 H 1.08998 * 109.47255 * 167.33943 * 5 4 2 34 34 H 0.97005 * 119.99378 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.47416 * 315.18094 * 14 4 2 36 36 H 1.09002 * 109.47086 * 195.18300 * 14 4 2 37 37 H 1.08001 * 119.46447 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.56788 * 179.72530 * 17 16 15 39 39 H 1.08001 * 120.19716 * 180.26426 * 18 17 16 40 40 H 1.08007 * 120.92397 * 0.02562 * 20 19 18 41 41 H 1.07993 * 120.03550 * 179.97438 * 21 20 19 42 42 H 1.08005 * 119.12346 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.4123 -0.1340 2.4147 6 6 2.0037 1.2238 2.6934 7 1 2.7948 1.6074 2.0662 8 6 1.5348 1.9764 3.7492 9 7 0.5717 1.5091 4.5133 10 14 2.2674 3.6597 4.0944 11 1 3.3280 3.9520 3.0969 12 1 1.2032 4.6913 4.0014 13 1 2.8531 3.6744 5.4590 14 6 1.7791 -2.1387 1.1074 15 6 2.7701 -2.7532 0.1528 16 6 2.3708 -3.1452 -1.0880 17 6 3.2691 -3.7206 -1.9839 18 6 4.5763 -3.8978 -1.6459 19 6 5.0235 -3.5049 -0.3744 20 6 6.3652 -3.6754 0.0158 21 6 6.7286 -3.2702 1.2684 22 6 5.7799 -2.7068 2.1194 23 7 4.5310 -2.5503 1.7533 24 6 4.1100 -2.9253 0.5411 25 1 -0.3633 0.6505 0.7956 26 1 -0.3633 0.3636 -0.9611 27 1 -0.3633 -1.0143 0.1656 28 1 1.8934 -0.5138 -0.8900 29 1 3.1210 1.4458 0.1390 30 1 1.7946 1.9146 -0.9513 31 1 1.5675 1.9949 0.8123 32 1 0.3358 -0.0392 2.2722 33 1 1.6103 -0.7964 3.2573 34 1 0.2421 2.0385 5.2564 35 1 0.7667 -2.3162 0.7442 36 1 1.8959 -2.5899 2.0927 37 1 1.3400 -3.0116 -1.3812 38 1 2.9251 -4.0268 -2.9608 39 1 5.2643 -4.3411 -2.3505 40 1 7.0874 -4.1145 -0.6567 41 1 7.7499 -3.3871 1.5993 42 1 6.0814 -2.3913 3.1073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:47 Heat of formation + Delta-G solvation = 66.755757 kcal Electronic energy + Delta-G solvation = -22633.387483 eV Core-core repulsion = 19578.612461 eV Total energy + Delta-G solvation = -3054.775022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.63951 -37.91525 -36.66183 -33.66981 -32.44994 -31.20266 -30.34300 -29.63694 -27.39138 -26.15087 -24.61207 -23.76283 -23.33870 -22.04865 -20.69502 -18.51591 -18.03715 -16.73159 -16.62825 -16.11589 -15.14112 -14.69830 -14.49881 -14.20737 -14.09102 -13.76485 -13.58433 -13.12034 -12.93073 -12.83622 -12.33082 -12.10006 -11.57297 -11.52499 -11.32806 -11.23786 -11.13387 -10.95120 -10.73158 -10.57539 -10.53796 -10.26913 -10.13908 -10.02356 -9.31566 -9.02692 -8.87452 -8.56880 -8.27929 -7.94024 -7.00821 -5.91240 -3.86636 0.61339 1.03274 2.21016 3.13977 3.36112 3.44034 3.48906 4.33780 4.52177 4.59121 4.71209 4.90150 4.95971 5.02570 5.16605 5.29520 5.37718 5.42812 5.47967 5.63402 5.74152 5.85428 5.95328 6.03051 6.09970 6.15739 6.19283 6.23426 6.35453 6.44832 6.54762 6.59801 6.67969 6.72638 6.78270 6.84642 7.07108 7.08787 7.39890 7.53454 7.59427 7.97100 8.27217 8.32340 8.39404 8.71507 9.18347 9.72269 11.19437 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.005508 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.209265 B = 5082.476297 C = 5973.244069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.090 3.910 3 C -0.144 4.144 4 N -0.514 5.514 5 C 0.189 3.811 6 C -0.492 4.492 7 H 0.073 0.927 8 C 0.051 3.949 9 N -0.901 5.901 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.286 1.286 14 C 0.095 3.905 15 C -0.024 4.024 16 C -0.118 4.118 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.104 4.104 20 C -0.071 4.071 21 C -0.174 4.174 22 C 0.120 3.880 23 N -0.430 5.430 24 C 0.143 3.857 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.025 0.975 31 H 0.097 0.903 32 H 0.004 0.996 33 H 0.025 0.975 34 H 0.257 0.743 35 H 0.034 0.966 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 -11.245 -11.473 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.019 4.019 3 C -0.201 4.201 4 N -0.237 5.237 5 C 0.065 3.935 6 C -0.531 4.531 7 H 0.091 0.909 8 C -0.149 4.149 9 N -0.542 5.542 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.212 1.212 14 C -0.033 4.033 15 C -0.026 4.026 16 C -0.138 4.138 17 C -0.127 4.127 18 C -0.133 4.133 19 C -0.106 4.106 20 C -0.097 4.097 21 C -0.194 4.194 22 C -0.053 4.053 23 N -0.136 5.136 24 C 0.021 3.979 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.115 0.885 32 H 0.021 0.979 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.406 -10.731 -10.749 16.898 hybrid contribution 0.194 0.424 -0.385 0.604 sum 7.600 -10.308 -11.134 16.970 Atomic orbital electron populations 1.22446 0.98880 1.01223 1.01494 1.21440 0.91704 0.95864 0.92903 1.22235 1.01470 0.95725 1.00706 1.62289 1.58943 0.98968 1.03519 1.19833 0.93146 0.95077 0.85471 1.21457 1.18782 1.00732 1.12079 0.90883 1.24969 0.95473 0.98206 0.96283 1.69979 1.28073 1.37714 1.18418 0.86573 0.79034 0.84478 0.78159 1.19714 1.21332 1.21214 1.20946 0.93075 0.91447 0.97878 1.19806 0.92841 0.95155 0.94767 1.20791 1.00101 0.99705 0.93214 1.20818 0.93486 0.98988 0.99426 1.20834 0.96225 1.01162 0.95098 1.18864 0.94553 1.01399 0.95764 1.21335 0.94598 0.97485 0.96320 1.21885 1.01139 1.01151 0.95259 1.23034 0.88613 0.93989 0.99665 1.68208 1.16772 1.12733 1.15921 1.18722 0.93526 0.95794 0.89831 0.90870 0.93841 0.93775 0.92873 0.93091 0.95604 0.88467 0.97875 0.95719 0.93283 0.94835 0.89900 0.85814 0.86036 0.85921 0.85088 0.85093 0.82698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.39 8.27 37.16 0.31 -3.08 16 2 C 0.09 1.79 2.82 -67.71 -0.19 1.60 16 3 C -0.14 -2.98 7.71 37.16 0.29 -2.70 16 4 N -0.51 -11.24 4.41 -229.51 -1.01 -12.25 16 5 C 0.19 4.90 4.47 -4.98 -0.02 4.88 16 6 C -0.49 -13.57 6.65 -34.44 -0.23 -13.80 16 7 H 0.07 2.02 5.45 -52.49 -0.29 1.73 16 8 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 9 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.09 1.82 4.64 -4.98 -0.02 1.79 16 15 C -0.02 -0.42 4.80 -104.51 -0.50 -0.92 16 16 C -0.12 -1.66 8.88 -39.95 -0.35 -2.01 16 17 C -0.11 -1.31 9.95 -39.93 -0.40 -1.71 16 18 C -0.11 -1.38 9.78 -39.52 -0.39 -1.77 16 19 C -0.10 -1.50 5.74 -106.80 -0.61 -2.11 16 20 C -0.07 -0.85 9.90 -39.23 -0.39 -1.24 16 21 C -0.17 -2.07 10.03 -39.77 -0.40 -2.46 16 22 C 0.12 1.78 11.15 -17.46 -0.19 1.59 16 23 N -0.43 -7.96 9.71 -10.97 -0.11 -8.07 16 24 C 0.14 2.50 6.59 -84.85 -0.56 1.94 16 25 H 0.07 1.57 6.55 -51.93 -0.34 1.23 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.78 6.28 -51.93 -0.33 0.45 16 28 H 0.05 0.99 6.84 -51.93 -0.35 0.64 16 29 H 0.05 1.10 7.56 -51.93 -0.39 0.71 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 2.27 5.38 -51.93 -0.28 1.99 16 32 H 0.00 0.10 5.71 -51.93 -0.30 -0.20 16 33 H 0.02 0.70 7.67 -51.93 -0.40 0.30 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.03 0.60 5.93 -51.92 -0.31 0.29 16 36 H 0.08 1.70 7.55 -51.93 -0.39 1.31 16 37 H 0.12 1.55 7.95 -52.49 -0.42 1.13 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.16 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -31.44 332.86 -10.04 -41.48 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.89 Total: 1.74 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -3.76 Total: -18.67 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.38 Total: -46.36 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.44 -10.04 -41.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.231 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds