Wall clock time and date at job start Tue Mar 31 2020 05:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00268 * 2 1 4 4 H 1.48495 * 109.47155 * 240.00050 * 3 2 1 5 5 H 1.48501 * 109.46714 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46890 * 120.00010 * 3 2 1 7 7 C 1.37880 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.45999 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31156 * 178.62869 * 10 9 7 12 12 N 1.46928 * 108.77653 * 54.63434 * 11 10 9 13 13 C 1.34772 * 120.63263 * 126.37126 * 12 11 10 14 14 O 1.21585 * 120.00097 * 185.22857 * 13 12 11 15 15 N 1.34774 * 119.99828 * 5.22085 * 13 12 11 16 16 C 1.46499 * 119.99734 * 175.02157 * 15 13 12 17 17 H 1.08999 * 110.44016 * 32.46173 * 16 15 13 18 18 C 1.54892 * 110.59847 * 269.84220 * 16 15 13 19 19 C 1.54971 * 102.77708 * 203.35162 * 18 16 15 20 20 C 1.54265 * 104.16028 * 37.88853 * 19 18 16 21 21 H 1.09002 * 110.03206 * 217.13737 * 20 19 18 22 22 F 1.39898 * 110.03605 * 95.75562 * 20 19 18 23 23 C 1.53881 * 106.63818 * 336.44377 * 20 19 18 24 24 C 1.46928 * 118.73423 * 306.64028 * 12 11 10 25 25 C 1.52761 * 109.01052 * 53.31524 * 24 12 11 26 26 H 0.96999 * 120.00152 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46125 * 299.97173 * 9 7 2 28 28 H 1.08996 * 109.49847 * 58.67459 * 10 9 7 29 29 H 1.09006 * 109.52263 * 298.59389 * 10 9 7 30 30 H 1.08993 * 109.58389 * 294.84313 * 11 10 9 31 31 H 1.09002 * 109.70336 * 174.48804 * 11 10 9 32 32 H 0.96998 * 120.00577 * 355.02196 * 15 13 12 33 33 H 1.08998 * 110.75613 * 321.63829 * 18 16 15 34 34 H 1.08998 * 110.75735 * 85.01055 * 18 16 15 35 35 H 1.08997 * 110.47451 * 279.23192 * 19 18 16 36 36 H 1.08995 * 110.53028 * 156.56412 * 19 18 16 37 37 H 1.09001 * 110.03170 * 119.26278 * 23 20 19 38 38 H 1.09001 * 110.03077 * 240.64253 * 23 20 19 39 39 H 1.09009 * 109.58207 * 173.14185 * 24 12 11 40 40 H 1.08995 * 109.59148 * 293.57134 * 24 12 11 41 41 H 1.08994 * 109.56714 * 185.54953 * 25 24 12 42 42 H 1.08998 * 109.38819 * 65.50813 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2456 -3.6622 -0.0005 11 6 1.4765 -4.9867 0.0341 12 7 0.5223 -5.0087 -1.0830 13 6 0.5120 -6.0344 -1.9572 14 8 -0.2159 -5.9965 -2.9303 15 7 1.3088 -7.1020 -1.7528 16 6 1.2193 -8.2635 -2.6411 17 1 0.9575 -7.9504 -3.6519 18 6 0.1834 -9.2820 -2.1038 19 6 0.6436 -10.6127 -2.7511 20 6 2.1839 -10.5368 -2.7155 21 1 2.6006 -10.9813 -3.6194 22 9 2.6708 -11.2033 -1.5859 23 6 2.5500 -9.0438 -2.6453 24 6 -0.4165 -3.8884 -1.2322 25 6 0.3700 -2.5790 -1.2495 26 1 -0.4850 0.8400 0.0004 27 1 0.6250 -2.5572 0.8900 28 1 2.8880 -3.5915 0.8771 29 1 2.8561 -3.6195 -0.9026 30 1 0.9370 -5.0713 0.9773 31 1 2.1734 -5.8190 -0.0643 32 1 1.9414 -7.1014 -1.0176 33 1 0.2316 -9.3450 -1.0167 34 1 -0.8223 -9.0199 -2.4324 35 1 0.2885 -10.6794 -3.7794 36 1 0.2901 -11.4634 -2.1685 37 1 3.1062 -8.8384 -1.7307 38 1 3.1450 -8.7640 -3.5147 39 1 -0.9667 -3.9949 -2.1672 40 1 -1.1136 -3.8817 -0.3943 41 1 -0.3224 -1.7373 -1.2607 42 1 0.9976 -2.5456 -2.1400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335957521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:23 Heat of formation + Delta-G solvation = -93.005035 kcal Electronic energy + Delta-G solvation = -22988.210272 eV Core-core repulsion = 19495.738278 eV Total energy + Delta-G solvation = -3492.471994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.87163 -40.10121 -37.94714 -36.57428 -33.79473 -33.14242 -31.02004 -30.11976 -29.01884 -27.40464 -25.92432 -23.08242 -22.33179 -21.08683 -20.88951 -20.19345 -18.90418 -17.65383 -17.01895 -16.45392 -16.29156 -15.55129 -15.12687 -15.02861 -14.59055 -14.22924 -14.00198 -13.63368 -13.38058 -13.15265 -12.87895 -12.66393 -12.29452 -12.26971 -11.86654 -11.75883 -11.68421 -11.36515 -11.10914 -10.92322 -10.91801 -10.80100 -10.68008 -10.42913 -10.05588 -9.76735 -9.55643 -9.18790 -8.98080 -8.89253 -8.36258 -7.89959 -6.01450 -4.08315 2.95674 3.30187 3.35409 3.37605 3.52008 4.02822 4.08993 4.26294 4.41362 4.43750 4.52976 5.00678 5.02628 5.12659 5.22428 5.25791 5.28273 5.37408 5.49776 5.64978 5.75734 5.79826 5.92462 5.94604 5.99129 6.08398 6.27493 6.42964 6.50053 6.61409 6.67747 6.81531 6.98154 7.14780 7.24734 7.49323 7.71230 7.93738 8.06594 8.30283 8.40702 8.93949 8.94846 9.56681 11.03924 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038944 B = 0.003299 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.802404 B = 8485.294376 C = 8855.019481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.618 5.618 13 C 0.706 3.294 14 O -0.601 6.601 15 N -0.746 5.746 16 C 0.161 3.839 17 H 0.099 0.901 18 C -0.137 4.137 19 C -0.149 4.149 20 C 0.088 3.912 21 H 0.088 0.912 22 F -0.213 7.213 23 C -0.159 4.159 24 C 0.127 3.873 25 C -0.124 4.124 26 H 0.261 0.739 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.395 0.605 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -19.198 -3.346 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.032 3.968 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.354 5.354 13 C 0.407 3.593 14 O -0.480 6.480 15 N -0.404 5.404 16 C 0.055 3.945 17 H 0.117 0.883 18 C -0.176 4.176 19 C -0.187 4.187 20 C 0.052 3.948 21 H 0.106 0.894 22 F -0.194 7.194 23 C -0.198 4.198 24 C 0.005 3.995 25 C -0.162 4.162 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.232 0.768 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.193 -19.025 -4.010 19.566 hybrid contribution 0.930 0.931 0.487 1.403 sum 3.123 -18.094 -3.523 18.697 Atomic orbital electron populations 1.69829 1.05853 1.26607 1.50590 1.24961 0.94861 0.99049 0.95061 0.86678 0.79627 0.83245 0.78553 1.20347 1.21299 1.20341 1.21150 0.92823 0.90634 1.50692 0.92822 1.18614 0.92559 0.91484 0.94181 1.22014 0.98957 0.94345 1.00895 1.21711 0.91170 0.98907 0.89223 1.47460 1.38148 1.21388 1.28373 1.15867 0.80747 0.79872 0.82774 1.90854 1.45800 1.81189 1.30164 1.45330 1.43331 1.16729 1.34966 1.21545 0.93436 0.84304 0.95227 0.88251 1.22973 1.00105 0.93580 1.00953 1.22960 0.93738 0.99216 1.02773 1.22145 0.95018 0.91794 0.85886 0.89354 1.92829 1.89481 1.82338 1.54715 1.23072 0.98372 0.93720 1.04619 1.21682 0.90949 0.85672 1.01240 1.21947 1.00126 0.94971 0.99206 0.92880 0.95484 0.92157 0.92924 0.91915 0.92331 0.76819 0.90845 0.90357 0.89602 0.89998 0.89587 0.89476 0.90545 0.92586 0.87833 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 11.31 55.43 0.63 -24.14 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 10 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 11 C 0.11 1.80 6.39 -3.71 -0.02 1.78 16 12 N -0.62 -11.19 2.98 -178.76 -0.53 -11.73 16 13 C 0.71 12.54 8.29 -86.92 -0.72 11.82 16 14 O -0.60 -12.64 15.38 5.29 0.08 -12.56 16 15 N -0.75 -9.91 5.07 -57.06 -0.29 -10.20 16 16 C 0.16 1.79 3.26 -66.27 -0.22 1.57 16 17 H 0.10 1.26 7.49 -51.93 -0.39 0.87 16 18 C -0.14 -1.38 6.58 -24.69 -0.16 -1.54 16 19 C -0.15 -1.14 6.63 -25.03 -0.17 -1.31 16 20 C 0.09 0.69 4.68 -25.61 -0.12 0.57 16 21 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 22 F -0.21 -2.19 17.05 2.25 0.04 -2.15 16 23 C -0.16 -1.35 6.38 -25.61 -0.16 -1.51 16 24 C 0.13 2.56 6.41 -3.93 -0.03 2.54 16 25 C -0.12 -2.88 5.14 -26.83 -0.14 -3.02 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.74 5.64 -51.93 -0.29 0.45 16 32 H 0.39 4.49 5.86 -40.82 -0.24 4.25 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 37 H 0.09 0.73 7.61 -51.93 -0.39 0.34 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.59 7.00 -51.92 -0.36 1.23 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -30.36 330.98 -9.17 -39.53 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.61 Total: 3.36 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.46 Total: -3.03 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.20 Total: -46.06 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.36 -9.17 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335957521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.472 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds