Wall clock time and date at job start Tue Mar 31 2020 05:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00268 * 2 1 4 4 H 1.48495 * 109.47155 * 240.00050 * 3 2 1 5 5 H 1.48501 * 109.46714 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46890 * 120.00010 * 3 2 1 7 7 C 1.37880 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.45999 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31156 * 178.62869 * 10 9 7 12 12 N 1.46928 * 108.77653 * 54.63434 * 11 10 9 13 13 C 1.34772 * 120.63263 * 126.37126 * 12 11 10 14 14 O 1.21585 * 120.00097 * 185.22857 * 13 12 11 15 15 N 1.34774 * 119.99828 * 5.22085 * 13 12 11 16 16 C 1.46499 * 119.99734 * 175.02157 * 15 13 12 17 17 H 1.08999 * 110.44016 * 32.46173 * 16 15 13 18 18 C 1.54892 * 110.59847 * 269.84220 * 16 15 13 19 19 C 1.54971 * 102.77708 * 203.35162 * 18 16 15 20 20 C 1.54265 * 104.16028 * 37.88853 * 19 18 16 21 21 H 1.09002 * 110.03206 * 217.13737 * 20 19 18 22 22 F 1.39898 * 110.03605 * 95.75562 * 20 19 18 23 23 C 1.53881 * 106.63818 * 336.44377 * 20 19 18 24 24 C 1.46928 * 118.73423 * 306.64028 * 12 11 10 25 25 C 1.52761 * 109.01052 * 53.31524 * 24 12 11 26 26 H 0.96999 * 120.00152 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46125 * 299.97173 * 9 7 2 28 28 H 1.08996 * 109.49847 * 58.67459 * 10 9 7 29 29 H 1.09006 * 109.52263 * 298.59389 * 10 9 7 30 30 H 1.08993 * 109.58389 * 294.84313 * 11 10 9 31 31 H 1.09002 * 109.70336 * 174.48804 * 11 10 9 32 32 H 0.96998 * 120.00577 * 355.02196 * 15 13 12 33 33 H 1.08998 * 110.75613 * 321.63829 * 18 16 15 34 34 H 1.08998 * 110.75735 * 85.01055 * 18 16 15 35 35 H 1.08997 * 110.47451 * 279.23192 * 19 18 16 36 36 H 1.08995 * 110.53028 * 156.56412 * 19 18 16 37 37 H 1.09001 * 110.03170 * 119.26278 * 23 20 19 38 38 H 1.09001 * 110.03077 * 240.64253 * 23 20 19 39 39 H 1.09009 * 109.58207 * 173.14185 * 24 12 11 40 40 H 1.08995 * 109.59148 * 293.57134 * 24 12 11 41 41 H 1.08994 * 109.56714 * 185.54953 * 25 24 12 42 42 H 1.08998 * 109.38819 * 65.50813 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2456 -3.6622 -0.0005 11 6 1.4765 -4.9867 0.0341 12 7 0.5223 -5.0087 -1.0830 13 6 0.5120 -6.0344 -1.9572 14 8 -0.2159 -5.9965 -2.9303 15 7 1.3088 -7.1020 -1.7528 16 6 1.2193 -8.2635 -2.6411 17 1 0.9575 -7.9504 -3.6519 18 6 0.1834 -9.2820 -2.1038 19 6 0.6436 -10.6127 -2.7511 20 6 2.1839 -10.5368 -2.7155 21 1 2.6006 -10.9813 -3.6194 22 9 2.6708 -11.2033 -1.5859 23 6 2.5500 -9.0438 -2.6453 24 6 -0.4165 -3.8884 -1.2322 25 6 0.3700 -2.5790 -1.2495 26 1 -0.4850 0.8400 0.0004 27 1 0.6250 -2.5572 0.8900 28 1 2.8880 -3.5915 0.8771 29 1 2.8561 -3.6195 -0.9026 30 1 0.9370 -5.0713 0.9773 31 1 2.1734 -5.8190 -0.0643 32 1 1.9414 -7.1014 -1.0176 33 1 0.2316 -9.3450 -1.0167 34 1 -0.8223 -9.0199 -2.4324 35 1 0.2885 -10.6794 -3.7794 36 1 0.2901 -11.4634 -2.1685 37 1 3.1062 -8.8384 -1.7307 38 1 3.1450 -8.7640 -3.5147 39 1 -0.9667 -3.9949 -2.1672 40 1 -1.1136 -3.8817 -0.3943 41 1 -0.3224 -1.7373 -1.2607 42 1 0.9976 -2.5456 -2.1400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335957521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:23 Heat of formation + Delta-G solvation = -110.472671 kcal Electronic energy + Delta-G solvation = -22988.967726 eV Core-core repulsion = 19495.738278 eV Total energy + Delta-G solvation = -3493.229448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.55756 -41.45714 -39.08568 -37.96092 -35.43776 -34.51288 -32.78531 -31.69172 -29.73090 -28.52300 -27.53565 -24.76235 -23.91795 -22.18722 -21.63643 -21.49712 -20.39922 -19.06955 -18.33591 -17.77766 -17.35196 -16.61411 -16.51029 -16.41923 -15.84089 -15.43350 -15.23301 -14.91418 -14.67880 -14.54823 -14.25461 -14.18706 -13.84011 -13.45920 -13.12167 -12.90729 -12.78335 -12.60094 -12.50017 -12.48322 -12.16972 -12.06414 -11.92776 -11.56119 -11.53665 -11.42739 -11.29780 -10.93845 -10.79327 -10.40081 -10.16089 -9.39028 -8.06930 -6.21012 1.42656 1.43516 1.50752 1.68943 2.13618 2.44328 2.90697 3.19617 3.37561 3.49813 3.74079 3.93989 4.07208 4.21756 4.30831 4.32888 4.36349 4.39906 4.43974 4.51318 4.59114 4.61288 4.73098 4.85508 4.90334 4.98032 5.01789 5.09868 5.16140 5.19786 5.24062 5.33118 5.47194 5.50321 5.61462 5.66836 5.98550 6.07007 6.12855 6.38963 6.90382 7.00212 7.47102 7.57054 8.96325 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038944 B = 0.003299 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.802404 B = 8485.294376 C = 8855.019481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.046 3.954 10 C -0.116 4.116 11 C 0.118 3.882 12 N -0.622 5.622 13 C 0.703 3.297 14 O -0.638 6.638 15 N -0.729 5.729 16 C 0.154 3.846 17 H 0.083 0.917 18 C -0.136 4.136 19 C -0.142 4.142 20 C 0.088 3.912 21 H 0.116 0.884 22 F -0.226 7.226 23 C -0.151 4.151 24 C 0.139 3.861 25 C -0.112 4.112 26 H 0.260 0.740 27 H 0.004 0.996 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.407 0.593 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -21.026 -3.174 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.154 4.154 11 C -0.005 4.005 12 N -0.358 5.358 13 C 0.404 3.596 14 O -0.520 6.520 15 N -0.386 5.386 16 C 0.049 3.951 17 H 0.101 0.899 18 C -0.175 4.175 19 C -0.180 4.180 20 C 0.051 3.949 21 H 0.134 0.866 22 F -0.207 7.207 23 C -0.190 4.190 24 C 0.016 3.984 25 C -0.151 4.151 26 H 0.069 0.931 27 H 0.022 0.978 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.246 0.754 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.887 -20.896 -3.815 21.594 hybrid contribution 0.407 1.491 0.423 1.602 sum 4.294 -19.405 -3.393 20.162 Atomic orbital electron populations 1.69967 1.07063 1.27153 1.51308 1.25712 0.95653 1.02261 0.94943 0.85732 0.78454 0.79458 0.78714 1.20079 1.21184 1.19481 1.21570 0.93067 0.92201 1.50399 0.92918 1.18594 0.93115 0.92539 0.93018 1.21869 0.98142 0.94264 1.01153 1.21801 0.91239 0.98461 0.88960 1.47405 1.38255 1.20963 1.29188 1.16022 0.80944 0.80504 0.82092 1.90829 1.47480 1.81992 1.31681 1.45240 1.42141 1.15929 1.35333 1.21735 0.95649 0.83783 0.93975 0.89900 1.22916 0.98998 0.94766 1.00855 1.22949 0.93801 0.97737 1.03520 1.22301 0.94951 0.91310 0.86315 0.86615 1.92809 1.89647 1.82566 1.55682 1.23031 0.96722 0.93694 1.05516 1.21323 0.90958 0.85179 1.00961 1.21703 0.99367 0.95678 0.98308 0.93050 0.97758 0.90784 0.93657 0.90722 0.88165 0.75430 0.91164 0.92020 0.88082 0.89466 0.89235 0.88020 0.91483 0.92163 0.90912 0.96200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.17 11.31 21.45 0.24 -51.93 16 2 C 0.01 0.71 5.30 84.66 0.45 1.16 16 3 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.53 -28.72 8.56 25.60 0.22 -28.50 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.05 2.20 2.07 -11.51 -0.02 2.18 16 10 C -0.12 -4.31 5.30 30.67 0.16 -4.15 16 11 C 0.12 3.48 6.39 86.36 0.55 4.03 16 12 N -0.62 -22.01 2.98 -837.74 -2.50 -24.51 16 13 C 0.70 24.33 8.29 179.06 1.49 25.82 16 14 O -0.64 -26.94 15.38 -3.98 -0.06 -27.00 16 15 N -0.73 -17.91 5.07 -452.69 -2.30 -20.21 16 16 C 0.15 3.14 3.26 46.07 0.15 3.29 16 17 H 0.08 2.02 7.49 -2.39 -0.02 2.00 16 18 C -0.14 -2.55 6.58 31.91 0.21 -2.34 16 19 C -0.14 -1.83 6.63 31.70 0.21 -1.62 16 20 C 0.09 1.09 4.68 31.32 0.15 1.24 16 21 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 22 F -0.23 -4.01 17.05 44.97 0.77 -3.24 16 23 C -0.15 -2.11 6.38 31.32 0.20 -1.91 16 24 C 0.14 5.73 6.41 86.22 0.55 6.28 16 25 C -0.11 -5.35 5.14 30.53 0.16 -5.20 16 26 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.10 2.14 5.64 -2.39 -0.01 2.13 16 32 H 0.41 7.95 5.86 -92.71 -0.54 7.40 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.07 8.11 -2.39 -0.02 1.05 16 37 H 0.09 1.22 7.61 -2.39 -0.02 1.20 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 2.88 7.00 -2.38 -0.02 2.86 16 40 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 41 H 0.07 3.94 6.03 -2.39 -0.01 3.93 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -67.05 330.98 3.12 -63.93 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.47 Total: 17.43 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 4.47 Total: 0.30 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -4.55 Total: -96.64 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.06 Total: -27.00 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.77 Total: -3.24 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.05 3.12 -63.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335957521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.546 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds