Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50703 * 120.00054 * 2 1 4 4 C 1.33118 * 119.99922 * 180.02562 * 2 1 3 5 5 F 1.35102 * 119.99988 * 172.87888 * 4 2 1 6 6 C 1.47291 * 120.00090 * 352.88173 * 4 2 1 7 7 O 1.21606 * 119.99877 * 353.80209 * 6 4 2 8 8 N 1.34774 * 120.00242 * 173.79913 * 6 4 2 9 9 C 1.47489 * 127.03249 * 0.02681 * 8 6 4 10 10 C 1.53998 * 107.08230 * 205.40943 * 9 8 6 11 11 H 1.09002 * 110.32529 * 117.58539 * 10 9 8 12 12 N 1.46504 * 110.32597 * 239.69847 * 10 9 8 13 13 C 1.36938 * 119.99634 * 272.16278 * 12 10 9 14 14 H 1.07998 * 120.00679 * 0.02562 * 13 12 10 15 15 C 1.38820 * 119.99478 * 179.97438 * 13 12 10 16 16 N 1.31619 * 119.99929 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00117 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47106 * 89.99365 * 17 15 13 19 19 H 1.48490 * 109.47263 * 209.99661 * 17 15 13 20 20 H 1.48502 * 109.46933 * 329.99937 * 17 15 13 21 21 C 1.54615 * 105.13690 * 358.64646 * 10 9 8 22 22 C 1.52997 * 110.74402 * 96.53712 * 21 10 9 23 23 C 1.53006 * 110.73560 * 219.86715 * 21 10 9 24 24 C 1.48121 * 127.03533 * 179.97438 * 8 6 4 25 25 H 1.09000 * 109.47222 * 264.37873 * 1 2 3 26 26 H 1.09000 * 109.47114 * 24.37836 * 1 2 3 27 27 H 1.09000 * 109.47593 * 144.37716 * 1 2 3 28 28 H 1.08996 * 109.47341 * 239.99868 * 3 2 1 29 29 H 1.08998 * 109.47155 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.46943 * 120.00258 * 3 2 1 31 31 H 1.09000 * 109.91155 * 86.04708 * 9 8 6 32 32 H 1.09001 * 110.07165 * 324.85904 * 9 8 6 33 33 H 0.96991 * 119.99779 * 92.17305 * 12 10 9 34 34 H 0.96991 * 120.00151 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.47093 * 60.00233 * 22 21 10 36 36 H 1.09000 * 109.47434 * 179.97438 * 22 21 10 37 37 H 1.09000 * 109.47085 * 300.00259 * 22 21 10 38 38 H 1.08997 * 109.47368 * 59.99951 * 23 21 10 39 39 H 1.09006 * 109.46820 * 180.02562 * 23 21 10 40 40 H 1.08998 * 109.46987 * 299.99175 * 23 21 10 41 41 H 1.08994 * 110.65956 * 259.18484 * 24 8 6 42 42 H 1.08998 * 110.66326 * 22.30310 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1528 -0.0005 5 9 3.5158 -1.1573 -0.1456 6 6 1.4446 -2.4236 0.1570 7 8 0.2531 -2.4157 0.3999 8 7 2.0990 -3.5951 0.0318 9 6 3.5325 -3.7852 -0.2587 10 6 3.6799 -5.1663 -0.9239 11 1 4.0689 -5.0593 -1.9365 12 7 4.5631 -6.0227 -0.1283 13 6 5.9159 -5.9949 -0.3394 14 1 6.3317 -5.3415 -1.0921 15 6 6.7527 -6.8060 0.4149 16 7 8.0530 -6.7790 0.2124 17 14 6.0336 -7.9356 1.7172 18 1 5.7155 -9.2526 1.1092 19 1 7.0202 -8.1208 2.8114 20 1 4.7931 -7.3314 2.2662 21 6 2.2499 -5.7532 -0.9572 22 6 1.5926 -5.5021 -2.3157 23 6 2.2700 -7.2480 -0.6311 24 6 1.5261 -4.9551 0.1588 25 1 -0.3634 -0.1007 1.0227 26 1 -0.3633 0.9360 -0.4242 27 1 -0.3634 -0.8353 -0.5985 28 1 2.8872 1.3629 -0.8899 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8900 31 1 4.1061 -3.7562 0.6677 32 1 3.8832 -3.0072 -0.9368 33 1 4.1897 -6.6093 0.5478 34 1 8.6377 -7.3459 0.7391 35 1 2.1852 -5.9749 -3.0990 36 1 0.5875 -5.9238 -2.3166 37 1 1.5370 -4.4292 -2.4998 38 1 2.6885 -7.3972 0.3641 39 1 1.2533 -7.6400 -0.6607 40 1 2.8823 -7.7717 -1.3652 41 1 1.7502 -5.3768 1.1386 42 1 0.4504 -4.9372 -0.0165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995662055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -42.986654 kcal Electronic energy + Delta-G solvation = -23706.744519 eV Core-core repulsion = 20216.441484 eV Total energy + Delta-G solvation = -3490.303034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.82545 -40.11876 -38.43869 -35.29216 -34.13660 -33.22799 -31.13379 -28.59139 -28.18670 -27.63332 -26.96250 -25.87620 -23.68975 -21.72782 -20.73054 -19.14165 -18.53122 -17.62360 -17.18110 -16.27019 -15.92963 -15.40509 -15.22234 -14.61459 -14.40914 -14.09673 -13.79001 -13.55210 -13.43807 -13.17475 -12.82729 -12.73573 -12.57356 -12.51373 -12.40385 -12.07691 -11.99695 -11.80371 -11.60073 -11.56141 -11.14700 -11.01756 -10.63435 -10.52829 -10.34302 -9.92872 -9.68483 -9.58910 -9.05185 -8.98099 -8.36406 -7.38369 -5.83953 -3.20980 1.09099 2.98630 3.08430 3.31575 3.33692 3.40694 4.17924 4.52017 4.52828 4.69308 4.78175 4.95138 5.05593 5.12042 5.28726 5.32134 5.48801 5.53111 5.57171 5.60851 5.64358 5.68765 5.74702 5.85603 5.88286 5.89916 6.01995 6.06531 6.10673 6.17707 6.23622 6.28921 6.37184 6.48543 6.50861 6.64994 6.75829 7.65751 7.91520 8.10192 8.34901 9.12074 9.84151 10.02765 11.34025 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.005165 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.412007 B = 5420.311804 C = 6197.590143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.084 4.084 3 C -0.122 4.122 4 C -0.013 4.013 5 F -0.131 7.131 6 C 0.560 3.440 7 O -0.535 6.535 8 N -0.604 5.604 9 C 0.068 3.932 10 C 0.181 3.819 11 H 0.076 0.924 12 N -0.739 5.739 13 C -0.249 4.249 14 H 0.092 0.908 15 C 0.010 3.990 16 N -0.930 5.930 17 Si 0.879 3.121 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.091 4.091 22 C -0.129 4.129 23 C -0.128 4.128 24 C 0.116 3.884 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.365 0.635 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.229 10.245 -2.178 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.178 4.178 4 C -0.035 4.035 5 F -0.109 7.109 6 C 0.349 3.651 7 O -0.416 6.416 8 N -0.336 5.336 9 C -0.057 4.057 10 C 0.070 3.930 11 H 0.094 0.906 12 N -0.382 5.382 13 C -0.379 4.379 14 H 0.110 0.890 15 C -0.186 4.186 16 N -0.577 5.577 17 Si 0.709 3.291 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.093 4.093 22 C -0.186 4.186 23 C -0.186 4.186 24 C -0.006 4.006 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.200 0.800 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.554 10.331 -2.121 18.793 hybrid contribution 0.193 -0.777 1.114 1.372 sum -15.361 9.555 -1.007 18.118 Atomic orbital electron populations 1.20997 0.89011 1.02752 1.03791 1.22653 0.97910 0.93539 0.94655 1.20887 1.00178 0.93463 1.03272 1.19400 0.77704 0.94273 1.12166 1.91488 1.29284 1.96940 1.93225 1.17838 0.86411 0.82514 0.78326 1.90768 1.13906 1.86396 1.50539 1.48745 1.11786 1.05135 1.67896 1.23640 0.79038 1.00991 1.02046 1.21090 0.88564 0.88002 0.95376 0.90643 1.42963 1.04136 1.48011 1.43118 1.19084 0.80693 1.20661 1.17471 0.88999 1.24647 0.95107 0.99575 0.99269 1.69689 1.01956 1.42716 1.43335 0.86649 0.78260 0.81692 0.82483 1.20840 1.21648 1.20397 1.22001 0.96430 0.95832 0.95043 1.21693 0.99890 1.01414 0.95612 1.21629 1.00832 0.93702 1.02416 1.22611 0.98533 0.80726 0.98699 0.90149 0.92124 0.89147 0.90446 0.90808 0.90427 0.90215 0.90435 0.79978 0.92948 0.92038 0.92788 0.92866 0.92458 0.93141 0.91247 0.91008 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 8.44 36.01 0.30 -0.87 16 2 C -0.08 -1.00 6.11 -101.13 -0.62 -1.61 16 3 C -0.12 -1.10 9.63 36.01 0.35 -0.75 16 4 C -0.01 -0.19 7.23 -37.68 -0.27 -0.47 16 5 F -0.13 -2.02 13.71 2.25 0.03 -1.99 16 6 C 0.56 9.03 7.69 -12.58 -0.10 8.93 16 7 O -0.54 -9.12 13.50 5.27 0.07 -9.04 16 8 N -0.60 -9.82 3.20 -170.97 -0.55 -10.37 16 9 C 0.07 1.20 5.89 -2.98 -0.02 1.18 16 10 C 0.18 3.29 3.10 -66.56 -0.21 3.09 16 11 H 0.08 1.41 7.82 -51.93 -0.41 1.00 16 12 N -0.74 -16.31 4.28 -52.09 -0.22 -16.54 16 13 C -0.25 -6.67 10.45 -15.06 -0.16 -6.83 16 14 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 15 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 16 N -0.93 -28.41 13.97 55.49 0.78 -27.63 16 17 Si 0.88 21.39 27.74 -169.99 -4.71 16.67 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 21 C -0.09 -1.37 0.94 -152.54 -0.14 -1.51 16 22 C -0.13 -1.67 8.49 37.16 0.32 -1.35 16 23 C -0.13 -1.88 7.84 37.16 0.29 -1.59 16 24 C 0.12 1.76 5.99 -2.03 -0.01 1.75 16 25 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 26 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 27 H 0.09 1.13 6.15 -51.93 -0.32 0.81 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.58 7.92 -51.93 -0.41 1.17 16 32 H 0.08 1.33 6.30 -51.93 -0.33 1.00 16 33 H 0.36 7.96 3.44 -40.82 -0.14 7.82 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.06 0.91 6.25 -51.93 -0.32 0.59 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.11 8.02 -51.93 -0.42 0.70 16 42 H 0.08 1.16 7.76 -51.93 -0.40 0.76 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -30.23 335.21 -6.45 -36.68 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.53 Total: 6.99 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.36 Total: 0.17 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.01 Total: -54.54 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.03 Total: -1.99 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.23 -6.45 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995662055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.305 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds