Wall clock time and date at job start Tue Mar 31 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50703 * 120.00054 * 2 1 4 4 C 1.33118 * 119.99922 * 180.02562 * 2 1 3 5 5 F 1.35102 * 119.99988 * 172.87888 * 4 2 1 6 6 C 1.47291 * 120.00090 * 352.88173 * 4 2 1 7 7 O 1.21606 * 119.99877 * 353.80209 * 6 4 2 8 8 N 1.34774 * 120.00242 * 173.79913 * 6 4 2 9 9 C 1.47489 * 127.03249 * 0.02681 * 8 6 4 10 10 C 1.53998 * 107.08230 * 205.40943 * 9 8 6 11 11 H 1.09002 * 110.32529 * 117.58539 * 10 9 8 12 12 N 1.46504 * 110.32597 * 239.69847 * 10 9 8 13 13 C 1.36938 * 119.99634 * 272.16278 * 12 10 9 14 14 H 1.07998 * 120.00679 * 0.02562 * 13 12 10 15 15 C 1.38820 * 119.99478 * 179.97438 * 13 12 10 16 16 N 1.31619 * 119.99929 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00117 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47106 * 89.99365 * 17 15 13 19 19 H 1.48490 * 109.47263 * 209.99661 * 17 15 13 20 20 H 1.48502 * 109.46933 * 329.99937 * 17 15 13 21 21 C 1.54615 * 105.13690 * 358.64646 * 10 9 8 22 22 C 1.52997 * 110.74402 * 96.53712 * 21 10 9 23 23 C 1.53006 * 110.73560 * 219.86715 * 21 10 9 24 24 C 1.48121 * 127.03533 * 179.97438 * 8 6 4 25 25 H 1.09000 * 109.47222 * 264.37873 * 1 2 3 26 26 H 1.09000 * 109.47114 * 24.37836 * 1 2 3 27 27 H 1.09000 * 109.47593 * 144.37716 * 1 2 3 28 28 H 1.08996 * 109.47341 * 239.99868 * 3 2 1 29 29 H 1.08998 * 109.47155 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.46943 * 120.00258 * 3 2 1 31 31 H 1.09000 * 109.91155 * 86.04708 * 9 8 6 32 32 H 1.09001 * 110.07165 * 324.85904 * 9 8 6 33 33 H 0.96991 * 119.99779 * 92.17305 * 12 10 9 34 34 H 0.96991 * 120.00151 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.47093 * 60.00233 * 22 21 10 36 36 H 1.09000 * 109.47434 * 179.97438 * 22 21 10 37 37 H 1.09000 * 109.47085 * 300.00259 * 22 21 10 38 38 H 1.08997 * 109.47368 * 59.99951 * 23 21 10 39 39 H 1.09006 * 109.46820 * 180.02562 * 23 21 10 40 40 H 1.08998 * 109.46987 * 299.99175 * 23 21 10 41 41 H 1.08994 * 110.65956 * 259.18484 * 24 8 6 42 42 H 1.08998 * 110.66326 * 22.30310 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1528 -0.0005 5 9 3.5158 -1.1573 -0.1456 6 6 1.4446 -2.4236 0.1570 7 8 0.2531 -2.4157 0.3999 8 7 2.0990 -3.5951 0.0318 9 6 3.5325 -3.7852 -0.2587 10 6 3.6799 -5.1663 -0.9239 11 1 4.0689 -5.0593 -1.9365 12 7 4.5631 -6.0227 -0.1283 13 6 5.9159 -5.9949 -0.3394 14 1 6.3317 -5.3415 -1.0921 15 6 6.7527 -6.8060 0.4149 16 7 8.0530 -6.7790 0.2124 17 14 6.0336 -7.9356 1.7172 18 1 5.7155 -9.2526 1.1092 19 1 7.0202 -8.1208 2.8114 20 1 4.7931 -7.3314 2.2662 21 6 2.2499 -5.7532 -0.9572 22 6 1.5926 -5.5021 -2.3157 23 6 2.2700 -7.2480 -0.6311 24 6 1.5261 -4.9551 0.1588 25 1 -0.3634 -0.1007 1.0227 26 1 -0.3633 0.9360 -0.4242 27 1 -0.3634 -0.8353 -0.5985 28 1 2.8872 1.3629 -0.8899 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8900 31 1 4.1061 -3.7562 0.6677 32 1 3.8832 -3.0072 -0.9368 33 1 4.1897 -6.6093 0.5478 34 1 8.6377 -7.3459 0.7391 35 1 2.1852 -5.9749 -3.0990 36 1 0.5875 -5.9238 -2.3166 37 1 1.5370 -4.4292 -2.4998 38 1 2.6885 -7.3972 0.3641 39 1 1.2533 -7.6400 -0.6607 40 1 2.8823 -7.7717 -1.3652 41 1 1.7502 -5.3768 1.1386 42 1 0.4504 -4.9372 -0.0165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995662055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:34 Heat of formation + Delta-G solvation = -61.078909 kcal Electronic energy + Delta-G solvation = -23707.529058 eV Core-core repulsion = 20216.441484 eV Total energy + Delta-G solvation = -3491.087573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.93298 -41.41265 -39.72828 -36.38944 -35.76826 -34.62143 -33.07961 -29.85648 -29.40092 -28.55713 -28.19554 -26.99764 -25.48787 -23.23683 -21.93906 -20.60907 -19.78683 -19.33297 -18.42547 -17.50116 -17.16582 -16.77805 -16.47481 -16.12400 -15.94290 -15.49597 -14.98503 -14.88523 -14.69775 -14.41262 -14.18540 -13.90003 -13.72982 -13.58922 -13.42877 -13.32138 -13.18276 -13.07865 -12.91975 -12.78905 -12.63722 -12.44435 -12.23989 -11.97960 -11.87119 -11.60135 -11.34399 -11.04777 -10.80167 -10.11088 -9.60907 -9.35913 -8.01893 -5.35978 0.03958 1.36640 1.39585 1.46108 1.77641 1.87874 2.47614 2.99754 3.28016 3.45860 3.50688 3.62567 3.76960 3.86944 3.93620 4.23578 4.24809 4.34106 4.47413 4.52124 4.59688 4.69327 4.72063 4.82531 4.83732 4.86854 4.88301 4.95460 5.01490 5.03690 5.06555 5.07408 5.24887 5.32072 5.35691 5.46505 5.52107 5.78740 6.21907 6.36838 6.85535 7.07381 7.81451 8.00974 9.19462 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.005165 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.412007 B = 5420.311804 C = 6197.590143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.051 4.051 3 C -0.125 4.125 4 C -0.058 4.058 5 F -0.143 7.143 6 C 0.558 3.442 7 O -0.547 6.547 8 N -0.608 5.608 9 C 0.083 3.917 10 C 0.173 3.827 11 H 0.068 0.932 12 N -0.739 5.739 13 C -0.229 4.229 14 H 0.061 0.939 15 C -0.056 4.056 16 N -0.981 5.981 17 Si 0.944 3.056 18 H -0.273 1.273 19 H -0.299 1.299 20 H -0.256 1.256 21 C -0.081 4.081 22 C -0.123 4.123 23 C -0.127 4.127 24 C 0.116 3.884 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.369 0.631 34 H 0.257 0.743 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.146 11.004 -1.995 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.054 4.054 3 C -0.181 4.181 4 C -0.080 4.080 5 F -0.122 7.122 6 C 0.349 3.651 7 O -0.429 6.429 8 N -0.339 5.339 9 C -0.042 4.042 10 C 0.063 3.937 11 H 0.086 0.914 12 N -0.383 5.383 13 C -0.360 4.360 14 H 0.079 0.921 15 C -0.248 4.248 16 N -0.632 5.632 17 Si 0.771 3.229 18 H -0.198 1.198 19 H -0.226 1.226 20 H -0.181 1.181 21 C -0.082 4.082 22 C -0.180 4.180 23 C -0.185 4.185 24 C -0.006 4.006 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.205 0.795 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.540 11.114 -1.953 21.704 hybrid contribution 1.018 -0.822 0.984 1.637 sum -17.523 10.291 -0.969 20.344 Atomic orbital electron populations 1.21051 0.88022 1.03880 1.03665 1.23155 0.98660 0.93834 0.89770 1.21038 1.00789 0.92696 1.03543 1.19421 0.77524 0.94518 1.16531 1.91451 1.29983 1.96954 1.93829 1.18121 0.86405 0.82870 0.77716 1.90755 1.14249 1.86654 1.51192 1.48742 1.10940 1.05864 1.68385 1.23217 0.79955 1.00488 1.00564 1.21273 0.90106 0.88029 0.94270 0.91400 1.42896 1.02771 1.48829 1.43777 1.19035 0.82779 1.18632 1.15539 0.92131 1.25386 0.95358 1.01941 1.02127 1.69865 1.03639 1.44489 1.45190 0.85589 0.77976 0.79911 0.79381 1.19847 1.22623 1.18055 1.21958 0.93808 0.96069 0.96396 1.21654 1.00948 1.01281 0.94138 1.21625 1.02550 0.93108 1.01186 1.22676 0.99230 0.80145 0.98505 0.90087 0.88742 0.90826 0.89933 0.87857 0.90154 0.92833 0.90389 0.79484 0.93388 0.91809 0.90472 0.93424 0.93771 0.89942 0.92257 0.91389 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 8.44 71.24 0.60 -1.47 16 2 C -0.05 -1.10 6.11 -17.60 -0.11 -1.20 16 3 C -0.12 -1.89 9.63 71.24 0.69 -1.20 16 4 C -0.06 -1.64 7.23 23.50 0.17 -1.47 16 5 F -0.14 -4.45 13.71 44.97 0.62 -3.84 16 6 C 0.56 17.61 7.69 86.62 0.67 18.28 16 7 O -0.55 -17.93 13.50 -4.05 -0.05 -17.98 16 8 N -0.61 -19.43 3.20 -813.07 -2.60 -22.03 16 9 C 0.08 2.97 5.89 86.53 0.51 3.48 16 10 C 0.17 6.29 3.10 45.88 0.14 6.43 16 11 H 0.07 2.57 7.82 -2.39 -0.02 2.55 16 12 N -0.74 -32.67 4.28 -318.73 -1.36 -34.03 16 13 C -0.23 -12.55 10.45 84.04 0.88 -11.68 16 14 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 15 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 16 N -0.98 -61.95 13.97 21.65 0.30 -61.65 16 17 Si 0.94 44.46 27.74 68.60 1.90 46.36 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 20 H -0.26 -10.95 6.52 99.48 0.65 -10.30 16 21 C -0.08 -2.28 0.94 -50.90 -0.05 -2.33 16 22 C -0.12 -2.91 8.49 71.98 0.61 -2.30 16 23 C -0.13 -3.43 7.84 71.98 0.56 -2.87 16 24 C 0.12 3.33 5.99 86.80 0.52 3.85 16 25 H 0.08 1.59 8.04 -2.39 -0.02 1.57 16 26 H 0.09 1.15 7.94 -2.39 -0.02 1.13 16 27 H 0.07 1.70 6.15 -2.39 -0.01 1.68 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 0.98 7.87 -2.39 -0.02 0.96 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 2.18 7.92 -2.39 -0.02 2.16 16 32 H 0.08 2.75 6.30 -2.39 -0.02 2.73 16 33 H 0.37 15.75 3.44 -92.71 -0.32 15.43 16 34 H 0.26 15.54 8.31 -92.72 -0.77 14.77 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.18 8.07 -2.39 -0.02 1.17 16 38 H 0.04 1.31 6.25 -2.39 -0.01 1.29 16 39 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 2.00 8.02 -2.39 -0.02 1.98 16 42 H 0.09 2.48 7.76 -2.39 -0.02 2.47 16 Total: -1.00 -66.93 335.21 5.10 -61.83 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.64 Total: 26.59 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.66 Total: 4.75 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -3.66 Total: -117.71 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.05 Total: -17.98 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.62 Total: -3.84 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.90 Total: 46.36 kcal Total: -66.93 5.10 -61.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995662055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.755 kcal (2) G-P(sol) polarization free energy of solvation -66.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds