Wall clock time and date at job start Tue Mar 31 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.84770 * 23.81258 * 10 9 7 12 12 C 1.53786 * 113.61076 * 155.00245 * 10 9 7 13 13 C 1.53782 * 87.08113 * 89.11742 * 12 10 9 14 14 H 1.08993 * 113.61396 * 270.80092 * 13 12 10 15 15 C 1.52999 * 113.61390 * 139.97946 * 13 12 10 16 16 N 1.46492 * 109.47279 * 175.00102 * 15 13 12 17 17 C 1.34773 * 120.00165 * 180.02562 * 16 15 13 18 18 O 1.21278 * 119.99957 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00220 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.01928 * 58.60613 * 19 17 16 21 21 C 1.53868 * 110.03491 * 180.02562 * 19 17 16 22 22 C 1.54268 * 106.60120 * 119.28163 * 21 19 17 23 23 C 1.54887 * 104.19404 * 23.60978 * 22 21 19 24 24 H 1.09003 * 110.75668 * 203.55450 * 23 22 21 25 25 F 1.39900 * 110.75637 * 80.37254 * 23 22 21 26 26 C 1.54267 * 110.02909 * 297.16479 * 19 17 16 27 27 C 1.53773 * 113.61780 * 252.49787 * 10 9 7 28 28 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 30 30 H 1.08997 * 113.61080 * 203.67197 * 12 10 9 31 31 H 1.09000 * 113.61524 * 334.56670 * 12 10 9 32 32 H 1.09007 * 109.46909 * 295.00472 * 15 13 12 33 33 H 1.08999 * 109.47051 * 54.99872 * 15 13 12 34 34 H 0.97004 * 119.99837 * 0.02562 * 16 15 13 35 35 H 1.09002 * 110.03620 * 238.56566 * 21 19 17 36 36 H 1.09001 * 110.03199 * 359.94659 * 21 19 17 37 37 H 1.09005 * 110.48475 * 142.29184 * 22 21 19 38 38 H 1.09004 * 110.48588 * 264.79918 * 22 21 19 39 39 H 1.08998 * 110.49032 * 335.78207 * 26 19 17 40 40 H 1.09002 * 110.48788 * 98.42754 * 26 19 17 41 41 H 1.08999 * 113.61344 * 25.43831 * 27 10 9 42 42 H 1.08996 * 113.61488 * 156.33591 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 1 3.0638 -3.5631 0.4207 12 6 1.2575 -4.8275 0.6066 13 6 0.7232 -5.0810 -0.8130 14 1 -0.1873 -4.5274 -1.0421 15 6 0.6237 -6.5643 -1.1746 16 7 -0.0030 -6.7050 -2.4912 17 6 -0.1958 -7.9303 -3.0183 18 8 0.1500 -8.9164 -2.4029 19 6 -0.8400 -8.0750 -4.3730 20 1 -0.2560 -7.5413 -5.1229 21 6 -0.9479 -9.5631 -4.7492 22 6 -2.4503 -9.8652 -4.9261 23 6 -3.0795 -8.4870 -5.2482 24 1 -4.1390 -8.4768 -4.9924 25 9 -2.8936 -8.1598 -6.5956 26 6 -2.2809 -7.5252 -4.3343 27 6 2.0040 -4.4053 -1.3307 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3554 -2.3880 0.0015 30 1 1.8828 -5.6345 0.9884 31 1 0.4884 -4.5160 1.3134 32 1 1.6226 -7.0001 -1.1992 33 1 0.0204 -7.0806 -0.4279 34 1 -0.2793 -5.9162 -2.9836 35 1 -0.4167 -9.7519 -5.6821 36 1 -0.5334 -10.1806 -3.9523 37 1 -2.6053 -10.5581 -5.7532 38 1 -2.8686 -10.2720 -4.0054 39 1 -2.6724 -7.5522 -3.3174 40 1 -2.3126 -6.5099 -4.7295 41 1 1.8376 -3.7530 -2.1879 42 1 2.8334 -5.0969 -1.4786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086458577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:01 Heat of formation + Delta-G solvation = -74.941327 kcal Electronic energy + Delta-G solvation = -22170.724546 eV Core-core repulsion = 18679.035853 eV Total energy + Delta-G solvation = -3491.688693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.89955 -40.25779 -38.78291 -36.85391 -34.82969 -33.55149 -30.39286 -29.47349 -28.86160 -27.01775 -25.18734 -23.59711 -22.49844 -21.67217 -21.13418 -19.87600 -18.63875 -17.83579 -17.34498 -16.61135 -16.20262 -15.82320 -15.62016 -15.14652 -15.05771 -14.48843 -14.37180 -13.81766 -13.59226 -13.56890 -13.31939 -13.02925 -12.46072 -12.26304 -12.08168 -11.69483 -11.68661 -11.48917 -11.24829 -11.18096 -10.97422 -10.83538 -10.77627 -10.39641 -10.17900 -10.03064 -9.85242 -9.67168 -9.21441 -9.08350 -8.92583 -7.11588 -6.17355 -3.17914 2.50656 3.09005 3.48503 3.52933 3.67126 3.85779 3.97701 4.31202 4.40823 4.60629 4.77257 4.83663 4.92161 4.96033 5.00195 5.05929 5.08363 5.13744 5.22772 5.38221 5.42639 5.48856 5.54604 5.60481 5.73930 5.76733 5.85003 5.89829 5.94022 5.96583 6.09774 6.23157 6.33706 6.47238 6.61080 6.75033 6.90136 7.42003 7.77357 8.11357 8.68232 9.15089 10.01274 10.15618 11.30655 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.002922 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.590849 B = 9578.789197 C =10363.006000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.334 4.334 8 H 0.067 0.933 9 N -0.717 5.717 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.149 4.149 13 C -0.120 4.120 14 H 0.090 0.910 15 C 0.130 3.870 16 N -0.723 5.723 17 C 0.517 3.483 18 O -0.544 6.544 19 C -0.115 4.115 20 H 0.103 0.897 21 C -0.119 4.119 22 C -0.147 4.147 23 C 0.083 3.917 24 H 0.093 0.907 25 F -0.208 7.208 26 C -0.140 4.140 27 C -0.168 4.168 28 H 0.255 0.745 29 H 0.368 0.632 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.402 0.598 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 -18.429 -9.020 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.465 4.465 8 H 0.085 0.915 9 N -0.357 5.357 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.188 4.188 13 C -0.138 4.138 14 H 0.108 0.892 15 C 0.007 3.993 16 N -0.373 5.373 17 C 0.303 3.697 18 O -0.421 6.421 19 C -0.136 4.136 20 H 0.121 0.879 21 C -0.156 4.156 22 C -0.185 4.185 23 C 0.047 3.953 24 H 0.111 0.889 25 F -0.188 7.188 26 C -0.178 4.178 27 C -0.209 4.209 28 H 0.066 0.934 29 H 0.201 0.799 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.128 -17.401 -8.559 19.826 hybrid contribution -0.227 -1.265 -0.405 1.348 sum -4.355 -18.666 -8.964 21.160 Atomic orbital electron populations 1.70863 1.06059 1.28409 1.53456 1.25813 0.97038 1.01086 1.00236 0.83186 0.73916 0.75218 0.76283 1.22257 1.21339 1.22076 1.20120 0.92155 0.85618 1.48609 0.91529 1.42180 1.04689 1.00445 1.88411 1.20985 0.95092 0.85112 0.92785 0.91825 1.23462 1.00512 0.99809 0.95059 1.22703 0.99423 0.93099 0.98610 0.89157 1.21476 0.97753 0.96822 0.83229 1.46080 1.62197 1.08141 1.20907 1.20486 0.78487 0.83146 0.87617 1.90659 1.51367 1.37699 1.62410 1.21943 0.97118 0.99187 0.95350 0.87930 1.22160 0.96164 0.94247 1.03074 1.22973 0.96251 0.96221 1.03062 1.22443 1.00456 0.95481 0.76906 0.88878 1.92816 1.96922 1.93766 1.35341 1.22965 0.93581 1.00092 1.01208 1.23880 0.95692 0.99617 1.01704 0.93417 0.79885 0.90280 0.91476 0.91535 0.91834 0.76322 0.91014 0.88629 0.90167 0.89609 0.89185 0.89312 0.91564 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.61 13.70 55.49 0.76 -27.85 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 3 Si 1.08 25.57 29.92 -169.99 -5.09 20.49 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.33 -9.23 9.97 -15.06 -0.15 -9.38 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.46 5.31 -52.63 -0.28 -17.74 16 10 C 0.17 3.34 4.56 -67.12 -0.31 3.04 16 11 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 12 C -0.15 -2.33 7.39 -25.92 -0.19 -2.52 16 13 C -0.12 -1.72 3.63 -89.81 -0.33 -2.05 16 14 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 15 C 0.13 1.68 5.51 -4.05 -0.02 1.66 16 16 N -0.72 -8.29 5.50 -60.30 -0.33 -8.62 16 17 C 0.52 6.25 6.99 -10.99 -0.08 6.18 16 18 O -0.54 -8.47 15.21 5.56 0.08 -8.38 16 19 C -0.11 -1.06 3.30 -90.66 -0.30 -1.36 16 20 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 21 C -0.12 -1.07 6.40 -25.62 -0.16 -1.23 16 22 C -0.15 -1.08 6.63 -25.07 -0.17 -1.25 16 23 C 0.08 0.63 4.70 -24.76 -0.12 0.51 16 24 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 25 F -0.21 -2.07 17.22 2.25 0.04 -2.03 16 26 C -0.14 -1.09 6.11 -25.09 -0.15 -1.24 16 27 C -0.17 -2.75 7.43 -25.92 -0.19 -2.94 16 28 H 0.25 7.57 6.77 -40.82 -0.28 7.30 16 29 H 0.37 9.16 6.73 -40.82 -0.27 8.88 16 30 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.90 7.84 -51.92 -0.41 0.49 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 1.03 6.39 -51.93 -0.33 0.70 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.69 7.85 -51.93 -0.41 0.28 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -32.38 343.70 -8.62 -41.01 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.73 Total: 9.90 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.26 Total: -11.95 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.15 Total: -54.21 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.38 -8.62 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086458577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.936 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds