Wall clock time and date at job start Tue Mar 31 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.84770 * 23.81258 * 10 9 7 12 12 C 1.53786 * 113.61076 * 155.00245 * 10 9 7 13 13 C 1.53782 * 87.08113 * 89.11742 * 12 10 9 14 14 H 1.08993 * 113.61396 * 270.80092 * 13 12 10 15 15 C 1.52999 * 113.61390 * 139.97946 * 13 12 10 16 16 N 1.46492 * 109.47279 * 175.00102 * 15 13 12 17 17 C 1.34773 * 120.00165 * 180.02562 * 16 15 13 18 18 O 1.21278 * 119.99957 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00220 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.01928 * 58.60613 * 19 17 16 21 21 C 1.53868 * 110.03491 * 180.02562 * 19 17 16 22 22 C 1.54268 * 106.60120 * 119.28163 * 21 19 17 23 23 C 1.54887 * 104.19404 * 23.60978 * 22 21 19 24 24 H 1.09003 * 110.75668 * 203.55450 * 23 22 21 25 25 F 1.39900 * 110.75637 * 80.37254 * 23 22 21 26 26 C 1.54267 * 110.02909 * 297.16479 * 19 17 16 27 27 C 1.53773 * 113.61780 * 252.49787 * 10 9 7 28 28 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 30 30 H 1.08997 * 113.61080 * 203.67197 * 12 10 9 31 31 H 1.09000 * 113.61524 * 334.56670 * 12 10 9 32 32 H 1.09007 * 109.46909 * 295.00472 * 15 13 12 33 33 H 1.08999 * 109.47051 * 54.99872 * 15 13 12 34 34 H 0.97004 * 119.99837 * 0.02562 * 16 15 13 35 35 H 1.09002 * 110.03620 * 238.56566 * 21 19 17 36 36 H 1.09001 * 110.03199 * 359.94659 * 21 19 17 37 37 H 1.09005 * 110.48475 * 142.29184 * 22 21 19 38 38 H 1.09004 * 110.48588 * 264.79918 * 22 21 19 39 39 H 1.08998 * 110.49032 * 335.78207 * 26 19 17 40 40 H 1.09002 * 110.48788 * 98.42754 * 26 19 17 41 41 H 1.08999 * 113.61344 * 25.43831 * 27 10 9 42 42 H 1.08996 * 113.61488 * 156.33591 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 1 3.0638 -3.5631 0.4207 12 6 1.2575 -4.8275 0.6066 13 6 0.7232 -5.0810 -0.8130 14 1 -0.1873 -4.5274 -1.0421 15 6 0.6237 -6.5643 -1.1746 16 7 -0.0030 -6.7050 -2.4912 17 6 -0.1958 -7.9303 -3.0183 18 8 0.1500 -8.9164 -2.4029 19 6 -0.8400 -8.0750 -4.3730 20 1 -0.2560 -7.5413 -5.1229 21 6 -0.9479 -9.5631 -4.7492 22 6 -2.4503 -9.8652 -4.9261 23 6 -3.0795 -8.4870 -5.2482 24 1 -4.1390 -8.4768 -4.9924 25 9 -2.8936 -8.1598 -6.5956 26 6 -2.2809 -7.5252 -4.3343 27 6 2.0040 -4.4053 -1.3307 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3554 -2.3880 0.0015 30 1 1.8828 -5.6345 0.9884 31 1 0.4884 -4.5160 1.3134 32 1 1.6226 -7.0001 -1.1992 33 1 0.0204 -7.0806 -0.4279 34 1 -0.2793 -5.9162 -2.9836 35 1 -0.4167 -9.7519 -5.6821 36 1 -0.5334 -10.1806 -3.9523 37 1 -2.6053 -10.5581 -5.7532 38 1 -2.8686 -10.2720 -4.0054 39 1 -2.6724 -7.5522 -3.3174 40 1 -2.3126 -6.5099 -4.7295 41 1 1.8376 -3.7530 -2.1879 42 1 2.8334 -5.0969 -1.4786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086458577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:00 Heat of formation + Delta-G solvation = -95.397010 kcal Electronic energy + Delta-G solvation = -22171.611571 eV Core-core repulsion = 18679.035853 eV Total energy + Delta-G solvation = -3492.575718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.57176 -41.24211 -40.12292 -37.63126 -36.24389 -35.19314 -31.97955 -30.53958 -29.51562 -28.22825 -26.54589 -25.59116 -23.67301 -22.71272 -21.76144 -20.82795 -20.02262 -19.42779 -18.55375 -17.45897 -16.98449 -16.77685 -16.72032 -16.58822 -15.96330 -15.78275 -15.46370 -15.45339 -14.96306 -14.82585 -14.34156 -13.90385 -13.62680 -13.43332 -13.12941 -12.99598 -12.79737 -12.57335 -12.39467 -12.29372 -11.93669 -11.89311 -11.80272 -11.78008 -11.58017 -11.49224 -11.37150 -11.05195 -10.89667 -10.71301 -10.11575 -9.12331 -8.40488 -5.34654 1.56183 1.58788 1.68796 1.83164 2.15351 2.69933 3.21454 3.34299 3.37466 3.57346 3.60534 3.68296 3.76514 3.82879 3.98722 4.12055 4.20313 4.22689 4.30777 4.34935 4.42036 4.47264 4.58999 4.63927 4.70572 4.80643 4.83191 4.88960 4.99559 5.02698 5.09901 5.17316 5.22666 5.28492 5.29865 5.47548 5.49233 5.65468 6.48662 6.49213 7.08740 7.17322 7.99226 8.09654 9.11288 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.002922 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.590849 B = 9578.789197 C =10363.006000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.103 4.103 3 Si 1.129 2.871 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.066 0.934 9 N -0.732 5.732 10 C 0.147 3.853 11 H 0.056 0.944 12 C -0.135 4.135 13 C -0.100 4.100 14 H 0.082 0.918 15 C 0.140 3.860 16 N -0.718 5.718 17 C 0.517 3.483 18 O -0.580 6.580 19 C -0.112 4.112 20 H 0.112 0.888 21 C -0.121 4.121 22 C -0.144 4.144 23 C 0.081 3.919 24 H 0.116 0.884 25 F -0.221 7.221 26 C -0.138 4.138 27 C -0.153 4.153 28 H 0.245 0.755 29 H 0.362 0.638 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.411 0.589 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 -19.218 -9.638 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.295 4.295 3 Si 0.954 3.046 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.084 0.916 9 N -0.372 5.372 10 C 0.037 3.963 11 H 0.074 0.926 12 C -0.174 4.174 13 C -0.119 4.119 14 H 0.101 0.899 15 C 0.016 3.984 16 N -0.368 5.368 17 C 0.305 3.695 18 O -0.460 6.460 19 C -0.133 4.133 20 H 0.130 0.870 21 C -0.159 4.159 22 C -0.181 4.181 23 C 0.045 3.955 24 H 0.133 0.867 25 F -0.202 7.202 26 C -0.176 4.176 27 C -0.194 4.194 28 H 0.055 0.945 29 H 0.194 0.806 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.066 0.934 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.954 -18.232 -9.193 20.797 hybrid contribution -0.213 -1.107 -0.194 1.144 sum -4.166 -19.339 -9.387 21.897 Atomic orbital electron populations 1.70967 1.07114 1.27934 1.56231 1.27168 0.97140 1.04582 1.00563 0.82597 0.73542 0.71609 0.76856 1.21127 1.21986 1.19935 1.20436 0.92358 0.86985 1.46623 0.91610 1.42304 1.04538 1.01373 1.88994 1.21325 0.94905 0.84617 0.95456 0.92616 1.23359 0.99953 0.98559 0.95531 1.22476 0.98123 0.93950 0.97321 0.89948 1.21278 0.97920 0.95194 0.83999 1.46030 1.61784 1.08547 1.20469 1.20939 0.77778 0.82516 0.88267 1.90648 1.52956 1.38823 1.63604 1.21980 0.97990 0.99677 0.93628 0.86972 1.22158 0.97457 0.93753 1.02499 1.22969 0.94936 0.96463 1.03759 1.22604 1.01713 0.95194 0.75958 0.86652 1.92791 1.97063 1.93875 1.36518 1.22974 0.92457 1.00560 1.01560 1.23705 0.97531 0.99190 0.98963 0.94480 0.80605 0.87572 0.92343 0.91609 0.91731 0.75308 0.90563 0.90584 0.89372 0.88903 0.88905 0.88531 0.93450 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.02 13.70 21.65 0.30 -59.72 16 2 C -0.10 -5.92 5.50 84.86 0.47 -5.45 16 3 Si 1.13 51.39 29.92 68.60 2.05 53.44 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.33 -18.45 9.97 84.04 0.84 -17.61 16 8 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 9 N -0.73 -35.89 5.31 -320.43 -1.70 -37.60 16 10 C 0.15 5.59 4.56 45.52 0.21 5.80 16 11 H 0.06 2.18 8.10 -2.38 -0.02 2.17 16 12 C -0.13 -4.01 7.39 31.12 0.23 -3.78 16 13 C -0.10 -2.72 3.63 -10.27 -0.04 -2.76 16 14 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 15 C 0.14 3.33 5.51 86.38 0.48 3.80 16 16 N -0.72 -15.26 5.50 -463.08 -2.55 -17.81 16 17 C 0.52 11.85 6.99 87.66 0.61 12.46 16 18 O -0.58 -17.61 15.21 -3.02 -0.05 -17.66 16 19 C -0.11 -1.89 3.30 -10.82 -0.04 -1.92 16 20 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 21 C -0.12 -2.04 6.40 31.32 0.20 -1.84 16 22 C -0.14 -1.85 6.63 31.67 0.21 -1.64 16 23 C 0.08 1.05 4.70 31.87 0.15 1.20 16 24 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 25 F -0.22 -4.00 17.22 44.97 0.77 -3.23 16 26 C -0.14 -1.86 6.11 31.66 0.19 -1.67 16 27 C -0.15 -4.81 7.43 31.12 0.23 -4.58 16 28 H 0.24 14.93 6.77 -92.71 -0.63 14.31 16 29 H 0.36 18.37 6.73 -92.71 -0.62 17.74 16 30 H 0.11 2.61 8.10 -2.39 -0.02 2.60 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.62 7.84 -2.38 -0.02 1.61 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.41 7.45 8.47 -92.71 -0.79 6.66 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.61 6.39 -2.39 -0.02 1.60 16 37 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.09 1.22 7.85 -2.39 -0.02 1.21 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.09 2.49 7.90 -2.39 -0.02 2.47 16 Total: -1.00 -69.68 343.70 2.33 -67.35 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.24 Total: 33.20 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 3.74 Total: -17.99 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.95 Total: -115.12 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.05 Total: -17.66 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.77 Total: -3.23 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -69.68 2.33 -67.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086458577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.042 kcal (2) G-P(sol) polarization free energy of solvation -69.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds