Wall clock time and date at job start Tue Mar 31 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 N 1.46897 * 109.47388 * 185.90009 * 3 2 1 5 5 C 1.46892 * 111.00362 * 291.46283 * 4 3 2 6 6 C 1.50705 * 109.47346 * 75.00808 * 5 4 3 7 7 H 1.08006 * 119.99666 * 5.21387 * 6 5 4 8 8 C 1.37873 * 120.00310 * 185.21233 * 6 5 4 9 9 N 1.31514 * 120.00060 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00157 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46981 * 89.99820 * 10 8 6 12 12 H 1.48497 * 109.47355 * 210.00026 * 10 8 6 13 13 H 1.48500 * 109.47098 * 330.00450 * 10 8 6 14 14 C 1.46900 * 110.99966 * 167.50816 * 4 3 2 15 15 C 1.50703 * 109.46962 * 299.48788 * 14 4 3 16 16 C 1.36174 * 120.19371 * 267.34910 * 15 14 4 17 17 C 1.39309 * 120.87264 * 179.97438 * 16 15 14 18 18 C 1.36117 * 121.06250 * 0.02562 * 17 16 15 19 19 C 1.40551 * 119.75201 * 0.27689 * 18 17 16 20 20 N 1.33685 * 121.07594 * 180.27868 * 19 18 17 21 21 C 1.31084 * 121.31860 * 179.74322 * 20 19 18 22 22 C 1.39334 * 121.75466 * 359.69958 * 21 20 19 23 23 C 1.36582 * 119.93864 * 0.02562 * 22 21 20 24 24 C 1.40394 * 120.19497 * 87.33227 * 15 14 4 25 25 H 1.09003 * 109.47652 * 59.99643 * 1 2 3 26 26 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47250 * 299.99472 * 1 2 3 28 28 H 1.09001 * 109.47026 * 240.00116 * 2 1 3 29 29 H 1.09003 * 109.47154 * 120.00182 * 2 1 3 30 30 H 1.09004 * 109.46864 * 65.90160 * 3 2 1 31 31 H 1.08995 * 109.47361 * 305.90667 * 3 2 1 32 32 H 1.09000 * 109.47671 * 195.01098 * 5 4 3 33 33 H 1.08997 * 109.47200 * 315.01174 * 5 4 3 34 34 H 0.96998 * 120.00130 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47212 * 179.48874 * 14 4 3 36 36 H 1.08997 * 109.47432 * 59.48749 * 14 4 3 37 37 H 1.07997 * 119.56491 * 359.95764 * 16 15 14 38 38 H 1.08005 * 119.47147 * 179.97438 * 17 16 15 39 39 H 1.08001 * 120.12162 * 180.02562 * 18 17 16 40 40 H 1.08001 * 119.12154 * 179.72645 * 21 20 19 41 41 H 1.07995 * 120.03026 * 179.97438 * 22 21 20 42 42 H 1.07993 * 120.91931 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5020 1.4450 -0.1424 5 6 4.1489 0.9006 1.0589 6 6 3.9897 -0.5978 1.0800 7 1 3.5356 -1.1045 0.2412 8 6 4.4237 -1.3220 2.1700 9 7 4.9762 -0.7050 3.1916 10 14 4.2257 -3.1792 2.1964 11 1 5.4320 -3.8140 1.6074 12 1 4.0588 -3.6394 3.5984 13 1 3.0289 -3.5607 1.4044 14 6 3.9994 2.7942 -0.4426 15 6 3.3973 3.2749 -1.7378 16 6 4.0540 3.0755 -2.9139 17 6 3.5103 3.5135 -4.1194 18 6 2.3092 4.1528 -4.1570 19 6 1.6039 4.3830 -2.9632 20 7 0.4197 5.0033 -2.9700 21 6 -0.2444 5.2160 -1.8600 22 6 0.2444 4.8029 -0.6224 23 6 1.4460 4.1583 -0.5448 24 6 2.1559 3.9306 -1.7389 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7655 1.9249 0.9381 31 1 1.5929 1.9860 -0.8323 32 1 5.2092 1.1532 1.0468 33 1 3.6838 1.3279 1.9472 34 1 5.2813 -1.2144 3.9586 35 1 5.0853 2.7692 -0.5339 36 1 3.7181 3.4727 0.3627 37 1 5.0091 2.5714 -2.9121 38 1 4.0508 3.3438 -5.0389 39 1 1.9016 4.4856 -5.1001 40 1 -1.1960 5.7246 -1.9062 41 1 -0.3259 4.9930 0.2748 42 1 1.8397 3.8309 0.4061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137628362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:38 Heat of formation + Delta-G solvation = 58.448117 kcal Electronic energy + Delta-G solvation = -22542.779349 eV Core-core repulsion = 19487.644081 eV Total energy + Delta-G solvation = -3055.135268 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93463 -37.75662 -36.65006 -33.75082 -32.65095 -32.22692 -30.46913 -30.22872 -27.30411 -26.18990 -24.26532 -23.87847 -23.47744 -21.38559 -20.78734 -19.50597 -18.06124 -16.99204 -16.79362 -16.23795 -15.32369 -14.68478 -14.60937 -14.27133 -14.18289 -14.09746 -13.67506 -13.54222 -13.22122 -12.81768 -12.39751 -12.36224 -11.86733 -11.64863 -11.55660 -11.39589 -11.16511 -11.12410 -11.03233 -10.69477 -10.66665 -10.20197 -10.17466 -9.95977 -9.56350 -9.34089 -9.12211 -8.66159 -8.40577 -8.04681 -7.31139 -6.05226 -4.03066 0.49388 0.91659 2.09737 3.03173 3.30027 3.36721 3.40084 4.17744 4.33928 4.40889 4.66714 4.80076 4.91462 4.97403 5.02391 5.17400 5.24648 5.28659 5.44844 5.49008 5.71315 5.72809 5.82546 5.90501 6.00212 6.07312 6.09414 6.14005 6.19365 6.20922 6.25696 6.47510 6.54522 6.59385 6.59593 6.76333 6.96556 6.99071 7.14618 7.29181 7.43613 7.79834 7.95257 8.06314 8.13540 8.49339 9.02156 9.57590 11.05215 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.004806 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.244548 B = 5824.197784 C = 6261.555953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.065 3.935 4 N -0.529 5.529 5 C 0.191 3.809 6 C -0.501 4.501 7 H 0.073 0.927 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.272 1.272 14 C 0.086 3.914 15 C -0.040 4.040 16 C -0.105 4.105 17 C -0.093 4.093 18 C -0.108 4.108 19 C 0.124 3.876 20 N -0.480 5.480 21 C 0.128 3.872 22 C -0.186 4.186 23 C -0.048 4.048 24 C -0.094 4.094 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.018 0.982 31 H 0.058 0.942 32 H 0.025 0.975 33 H -0.002 1.002 34 H 0.261 0.739 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.155 0.845 41 H 0.134 0.866 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 10.439 -9.394 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.063 4.063 4 N -0.254 5.254 5 C 0.067 3.933 6 C -0.539 4.539 7 H 0.091 0.909 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.197 1.197 14 C -0.042 4.042 15 C -0.041 4.041 16 C -0.123 4.123 17 C -0.113 4.113 18 C -0.127 4.127 19 C 0.004 3.996 20 N -0.188 5.188 21 C -0.045 4.045 22 C -0.206 4.206 23 C -0.074 4.074 24 C -0.096 4.096 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.015 0.985 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.172 0.828 41 H 0.152 0.848 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.911 10.333 -10.464 16.249 hybrid contribution 0.033 -0.786 1.706 1.879 sum -6.878 9.546 -8.758 14.668 Atomic orbital electron populations 1.21800 0.97988 1.00629 1.00258 1.21955 0.92561 0.97041 1.05022 1.22247 0.88741 0.97544 0.97800 1.62262 1.04782 1.16937 1.41380 1.19806 0.93850 0.95473 0.84219 1.21308 1.38605 0.91259 1.02759 0.90894 1.24984 0.95562 0.98530 0.95657 1.69954 1.41193 1.35637 1.07123 0.86568 0.78654 0.85596 0.77084 1.20669 1.21395 1.19706 1.21095 0.99769 0.91508 0.91782 1.19801 0.92697 0.95095 0.96504 1.20825 1.00880 0.99151 0.91470 1.20907 0.95275 0.96871 0.98243 1.20687 0.94933 1.00432 0.96635 1.18831 0.91658 0.96381 0.92756 1.68012 1.06652 1.13603 1.30544 1.22870 0.98647 0.95216 0.87782 1.21828 0.97677 1.01514 0.99582 1.21742 0.94013 0.93317 0.98328 1.18746 0.96206 1.00616 0.94024 0.94228 0.93315 0.93582 0.92232 0.87732 0.96396 0.92417 0.95692 0.98458 0.92976 0.89855 0.94947 0.85209 0.85468 0.85191 0.82781 0.84771 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 37.15 0.37 -2.07 16 2 C -0.13 -2.54 4.56 -26.73 -0.12 -2.66 16 3 C 0.06 1.24 3.39 -3.83 -0.01 1.23 16 4 N -0.53 -10.92 4.54 -237.53 -1.08 -12.00 16 5 C 0.19 4.73 4.74 -4.98 -0.02 4.70 16 6 C -0.50 -13.30 6.64 -34.44 -0.23 -13.53 16 7 H 0.07 1.93 5.91 -52.48 -0.31 1.62 16 8 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 9 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 10 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 14 C 0.09 1.50 4.87 -4.97 -0.02 1.48 16 15 C -0.04 -0.62 4.82 -104.55 -0.50 -1.13 16 16 C -0.10 -1.47 9.59 -39.93 -0.38 -1.85 16 17 C -0.09 -1.15 9.94 -39.95 -0.40 -1.54 16 18 C -0.11 -1.44 9.98 -39.47 -0.39 -1.83 16 19 C 0.12 1.89 6.60 -84.86 -0.56 1.33 16 20 N -0.48 -6.98 10.34 -10.98 -0.11 -7.10 16 21 C 0.13 1.54 11.15 -17.46 -0.19 1.34 16 22 C -0.19 -2.22 10.03 -39.77 -0.40 -2.62 16 23 C -0.05 -0.68 7.24 -39.22 -0.28 -0.97 16 24 C -0.09 -1.45 4.61 -106.80 -0.49 -1.94 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.23 7.75 -51.93 -0.40 0.82 16 29 H 0.10 2.38 5.45 -51.93 -0.28 2.10 16 30 H 0.02 0.35 6.98 -51.93 -0.36 -0.01 16 31 H 0.06 1.05 4.40 -51.93 -0.23 0.82 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 33 H 0.00 -0.06 7.85 -51.93 -0.41 -0.47 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.08 1.41 7.89 -51.93 -0.41 1.00 16 36 H 0.03 0.55 6.59 -51.93 -0.34 0.21 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.14 2.02 4.95 -52.49 -0.26 1.76 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -29.75 331.20 -10.17 -39.92 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.93 Total: 1.96 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -3.75 Total: -18.70 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.46 Total: -44.26 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.75 -10.17 -39.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137628362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.367 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds