Wall clock time and date at job start Tue Mar 31 2020 06:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 N 1.46897 * 109.47388 * 185.90009 * 3 2 1 5 5 C 1.46892 * 111.00362 * 291.46283 * 4 3 2 6 6 C 1.50705 * 109.47346 * 75.00808 * 5 4 3 7 7 H 1.08006 * 119.99666 * 5.21387 * 6 5 4 8 8 C 1.37873 * 120.00310 * 185.21233 * 6 5 4 9 9 N 1.31514 * 120.00060 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00157 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46981 * 89.99820 * 10 8 6 12 12 H 1.48497 * 109.47355 * 210.00026 * 10 8 6 13 13 H 1.48500 * 109.47098 * 330.00450 * 10 8 6 14 14 C 1.46900 * 110.99966 * 167.50816 * 4 3 2 15 15 C 1.50703 * 109.46962 * 299.48788 * 14 4 3 16 16 C 1.36174 * 120.19371 * 267.34910 * 15 14 4 17 17 C 1.39309 * 120.87264 * 179.97438 * 16 15 14 18 18 C 1.36117 * 121.06250 * 0.02562 * 17 16 15 19 19 C 1.40551 * 119.75201 * 0.27689 * 18 17 16 20 20 N 1.33685 * 121.07594 * 180.27868 * 19 18 17 21 21 C 1.31084 * 121.31860 * 179.74322 * 20 19 18 22 22 C 1.39334 * 121.75466 * 359.69958 * 21 20 19 23 23 C 1.36582 * 119.93864 * 0.02562 * 22 21 20 24 24 C 1.40394 * 120.19497 * 87.33227 * 15 14 4 25 25 H 1.09003 * 109.47652 * 59.99643 * 1 2 3 26 26 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47250 * 299.99472 * 1 2 3 28 28 H 1.09001 * 109.47026 * 240.00116 * 2 1 3 29 29 H 1.09003 * 109.47154 * 120.00182 * 2 1 3 30 30 H 1.09004 * 109.46864 * 65.90160 * 3 2 1 31 31 H 1.08995 * 109.47361 * 305.90667 * 3 2 1 32 32 H 1.09000 * 109.47671 * 195.01098 * 5 4 3 33 33 H 1.08997 * 109.47200 * 315.01174 * 5 4 3 34 34 H 0.96998 * 120.00130 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47212 * 179.48874 * 14 4 3 36 36 H 1.08997 * 109.47432 * 59.48749 * 14 4 3 37 37 H 1.07997 * 119.56491 * 359.95764 * 16 15 14 38 38 H 1.08005 * 119.47147 * 179.97438 * 17 16 15 39 39 H 1.08001 * 120.12162 * 180.02562 * 18 17 16 40 40 H 1.08001 * 119.12154 * 179.72645 * 21 20 19 41 41 H 1.07995 * 120.03026 * 179.97438 * 22 21 20 42 42 H 1.07993 * 120.91931 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5020 1.4450 -0.1424 5 6 4.1489 0.9006 1.0589 6 6 3.9897 -0.5978 1.0800 7 1 3.5356 -1.1045 0.2412 8 6 4.4237 -1.3220 2.1700 9 7 4.9762 -0.7050 3.1916 10 14 4.2257 -3.1792 2.1964 11 1 5.4320 -3.8140 1.6074 12 1 4.0588 -3.6394 3.5984 13 1 3.0289 -3.5607 1.4044 14 6 3.9994 2.7942 -0.4426 15 6 3.3973 3.2749 -1.7378 16 6 4.0540 3.0755 -2.9139 17 6 3.5103 3.5135 -4.1194 18 6 2.3092 4.1528 -4.1570 19 6 1.6039 4.3830 -2.9632 20 7 0.4197 5.0033 -2.9700 21 6 -0.2444 5.2160 -1.8600 22 6 0.2444 4.8029 -0.6224 23 6 1.4460 4.1583 -0.5448 24 6 2.1559 3.9306 -1.7389 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7655 1.9249 0.9381 31 1 1.5929 1.9860 -0.8323 32 1 5.2092 1.1532 1.0468 33 1 3.6838 1.3279 1.9472 34 1 5.2813 -1.2144 3.9586 35 1 5.0853 2.7692 -0.5339 36 1 3.7181 3.4727 0.3627 37 1 5.0091 2.5714 -2.9121 38 1 4.0508 3.3438 -5.0389 39 1 1.9016 4.4856 -5.1001 40 1 -1.1960 5.7246 -1.9062 41 1 -0.3259 4.9930 0.2748 42 1 1.8397 3.8309 0.4061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137628362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:37 Heat of formation + Delta-G solvation = 41.429768 kcal Electronic energy + Delta-G solvation = -22543.517320 eV Core-core repulsion = 19487.644081 eV Total energy + Delta-G solvation = -3055.873239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00566 -39.16767 -37.85068 -35.13582 -34.44070 -33.70692 -31.51451 -31.43851 -29.16225 -27.57982 -25.75272 -25.10014 -24.50778 -23.12552 -22.16755 -20.94990 -19.09495 -18.41514 -17.96143 -17.77372 -16.93006 -16.47205 -15.75180 -15.73272 -15.50282 -15.24864 -15.03235 -14.81689 -14.34766 -14.18056 -13.84010 -13.77925 -13.46074 -13.14073 -13.01743 -12.77225 -12.64653 -12.54672 -12.45932 -12.35902 -12.16573 -11.78475 -11.63894 -11.45001 -11.23332 -11.00294 -10.50060 -10.45443 -9.67710 -9.20364 -8.96932 -8.15424 -6.19743 -0.55273 -0.10043 1.01534 1.42110 1.42708 1.53412 2.02297 2.42450 3.08234 3.16548 3.40037 3.41183 3.59570 3.83147 3.86995 3.89079 4.12233 4.20909 4.24985 4.30028 4.41671 4.53349 4.57073 4.60720 4.66951 4.72816 4.78560 4.90973 5.01465 5.03919 5.11036 5.14754 5.17072 5.20605 5.28208 5.44835 5.46112 5.58540 5.66452 5.72281 5.74366 5.95032 6.10203 6.35824 6.60812 6.91674 6.94338 7.44961 8.95021 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.004806 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.244548 B = 5824.197784 C = 6261.555953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.074 3.926 4 N -0.535 5.535 5 C 0.207 3.793 6 C -0.503 4.503 7 H 0.073 0.927 8 C 0.002 3.998 9 N -0.936 5.936 10 Si 0.957 3.043 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.263 1.263 14 C 0.091 3.909 15 C -0.063 4.063 16 C -0.105 4.105 17 C -0.090 4.090 18 C -0.109 4.109 19 C 0.103 3.897 20 N -0.497 5.497 21 C 0.129 3.871 22 C -0.173 4.173 23 C -0.072 4.072 24 C -0.107 4.107 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.003 0.997 33 H -0.032 1.032 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.136 0.864 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.193 0.807 41 H 0.165 0.835 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.660 10.672 -11.104 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.054 4.054 4 N -0.259 5.259 5 C 0.081 3.919 6 C -0.542 4.542 7 H 0.091 0.909 8 C -0.195 4.195 9 N -0.578 5.578 10 Si 0.782 3.218 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.188 1.188 14 C -0.037 4.037 15 C -0.064 4.064 16 C -0.124 4.124 17 C -0.109 4.109 18 C -0.128 4.128 19 C -0.017 4.017 20 N -0.205 5.205 21 C -0.044 4.044 22 C -0.192 4.192 23 C -0.098 4.098 24 C -0.110 4.110 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.092 0.908 32 H 0.021 0.979 33 H -0.014 1.014 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.154 0.846 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.210 0.790 41 H 0.183 0.817 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.706 10.574 -12.196 18.340 hybrid contribution 0.537 -0.735 2.197 2.378 sum -8.170 9.838 -9.999 16.233 Atomic orbital electron populations 1.21706 0.95045 1.01733 1.01284 1.21835 0.95216 0.96731 1.02642 1.22201 0.87745 0.97374 0.98074 1.62176 1.05641 1.19268 1.38791 1.19454 0.92549 0.95001 0.84872 1.21557 1.37810 0.92165 1.02620 0.90941 1.25784 0.95346 1.03041 0.95333 1.70079 1.42497 1.37358 1.07826 0.85559 0.78891 0.80174 0.77140 1.20171 1.21156 1.18753 1.21040 0.99708 0.89760 0.93186 1.19639 0.93753 0.97157 0.95875 1.21060 1.01008 0.98585 0.91750 1.21198 0.95110 0.95881 0.98710 1.21014 0.94986 0.99845 0.96907 1.19138 0.92360 0.97026 0.93159 1.68080 1.06638 1.14094 1.31697 1.23535 0.99537 0.94226 0.87068 1.22190 0.96631 0.99437 1.00953 1.21761 0.95331 0.95086 0.97610 1.18841 0.96209 1.01096 0.94814 0.92870 0.92232 0.92800 0.93394 0.91078 0.96985 0.90841 0.97938 1.01380 0.92966 0.90121 0.95086 0.84593 0.82084 0.83287 0.78991 0.81750 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.91 71.98 0.71 -3.65 16 2 C -0.13 -5.02 4.56 30.59 0.14 -4.88 16 3 C 0.07 2.86 3.39 86.30 0.29 3.16 16 4 N -0.53 -22.79 4.54 -905.40 -4.11 -26.91 16 5 C 0.21 10.74 4.74 85.56 0.41 11.14 16 6 C -0.50 -27.48 6.64 25.60 0.17 -27.31 16 7 H 0.07 3.90 5.91 -2.91 -0.02 3.88 16 8 C 0.00 0.13 5.46 84.65 0.46 0.60 16 9 N -0.94 -55.48 13.29 21.45 0.28 -55.19 16 10 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 14 C 0.09 3.26 4.87 85.56 0.42 3.68 16 15 C -0.06 -1.98 4.82 -19.82 -0.10 -2.08 16 16 C -0.11 -2.88 9.59 22.05 0.21 -2.66 16 17 C -0.09 -2.01 9.94 22.03 0.22 -1.79 16 18 C -0.11 -2.66 9.98 22.34 0.22 -2.44 16 19 C 0.10 2.97 6.60 40.28 0.27 3.24 16 20 N -0.50 -13.30 10.34 -188.64 -1.95 -15.25 16 21 C 0.13 2.72 11.15 85.07 0.95 3.67 16 22 C -0.17 -3.72 10.03 22.15 0.22 -3.49 16 23 C -0.07 -2.00 7.24 22.50 0.16 -1.84 16 24 C -0.11 -3.25 4.61 -21.28 -0.10 -3.35 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.97 7.75 -2.39 -0.02 1.96 16 29 H 0.07 3.31 5.45 -2.39 -0.01 3.29 16 30 H 0.01 0.48 6.98 -2.39 -0.02 0.46 16 31 H 0.07 2.66 4.40 -2.39 -0.01 2.65 16 32 H 0.00 0.14 7.83 -2.39 -0.02 0.12 16 33 H -0.03 -1.79 7.85 -2.39 -0.02 -1.81 16 34 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.08 2.87 7.89 -2.39 -0.02 2.85 16 36 H 0.03 1.11 6.59 -2.39 -0.02 1.10 16 37 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 38 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 40 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.13 3.78 4.95 -2.91 -0.01 3.77 16 Total: -1.00 -65.54 331.20 1.92 -63.62 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.01 Total: 15.93 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.66 Total: -28.00 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -5.78 Total: -97.35 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.54 1.92 -63.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137628362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.052 kcal (2) G-P(sol) polarization free energy of solvation -65.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds