Wall clock time and date at job start Tue Mar 31 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46912 * 2 1 4 4 H 1.09002 * 109.47204 * 55.00409 * 3 2 1 5 5 C 1.52996 * 109.47699 * 295.00204 * 3 2 1 6 6 C 1.53007 * 109.46775 * 175.00261 * 3 2 1 7 7 N 1.46501 * 109.46709 * 185.00210 * 6 3 2 8 8 C 1.34783 * 119.99402 * 180.27455 * 7 6 3 9 9 S 1.71202 * 120.00036 * 354.82315 * 8 7 6 10 10 N 1.34775 * 119.99488 * 174.82193 * 8 7 6 11 11 C 1.46918 * 120.63657 * 4.91359 * 10 8 7 12 12 C 1.53617 * 108.54834 * 126.36594 * 11 10 8 13 13 C 1.53039 * 109.24327 * 54.85488 * 12 11 10 14 14 C 1.53035 * 109.54076 * 298.51557 * 13 12 11 15 15 H 1.09007 * 109.49490 * 301.41468 * 14 13 12 16 16 C 1.50699 * 109.52546 * 181.33159 * 14 13 12 17 17 H 1.07997 * 119.99964 * 0.14415 * 16 14 13 18 18 C 1.37876 * 119.99909 * 180.14616 * 16 14 13 19 19 N 1.31514 * 120.00284 * 180.02562 * 18 16 14 20 20 Si 1.86806 * 119.99847 * 359.97438 * 18 16 14 21 21 H 1.48501 * 109.46810 * 90.00609 * 20 18 16 22 22 H 1.48504 * 109.46874 * 210.00046 * 20 18 16 23 23 H 1.48498 * 109.47327 * 330.00201 * 20 18 16 24 24 C 1.46933 * 120.62967 * 185.18633 * 10 8 7 25 25 H 1.09010 * 109.46976 * 299.99612 * 1 2 3 26 26 H 1.09000 * 109.47418 * 59.99193 * 1 2 3 27 27 H 1.08994 * 109.47345 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46725 * 240.00758 * 2 1 3 29 29 H 1.08995 * 109.47167 * 120.00437 * 2 1 3 30 30 H 1.08998 * 109.47351 * 179.97438 * 5 3 2 31 31 H 1.08996 * 109.47363 * 300.00399 * 5 3 2 32 32 H 1.09005 * 109.47020 * 59.99771 * 5 3 2 33 33 H 1.08993 * 109.46720 * 65.00360 * 6 3 2 34 34 H 1.09000 * 109.47138 * 304.99821 * 6 3 2 35 35 H 0.96994 * 120.00796 * 0.02562 * 7 6 3 36 36 H 1.09003 * 109.58717 * 246.20331 * 11 10 8 37 37 H 1.09007 * 109.58382 * 6.61854 * 11 10 8 38 38 H 1.09008 * 109.63558 * 294.86203 * 12 11 10 39 39 H 1.09003 * 109.46206 * 174.74729 * 12 11 10 40 40 H 1.09000 * 109.46161 * 178.49287 * 13 12 11 41 41 H 1.09003 * 109.44531 * 58.53001 * 13 12 11 42 42 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 43 43 H 1.09009 * 109.58462 * 353.37779 * 24 10 8 44 44 H 1.08995 * 109.58710 * 113.65383 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5649 1.4443 0.1257 7 7 4.0433 2.8238 0.2458 8 6 5.3629 3.0715 0.3633 9 16 6.4685 1.7720 0.5056 10 7 5.8121 4.3422 0.3688 11 6 4.8698 5.4694 0.3557 12 6 5.2032 6.3986 1.5326 13 6 6.6751 6.8094 1.4497 14 6 7.5603 5.5653 1.5530 15 1 7.3582 5.0521 2.4932 16 6 9.0102 5.9733 1.5041 17 1 9.2749 7.0162 1.4112 18 6 9.9989 5.0151 1.5780 19 7 11.2642 5.3711 1.5358 20 14 9.5410 3.2112 1.7393 21 1 9.4065 2.6119 0.3873 22 1 10.6019 2.4969 2.4940 23 1 8.2510 3.0909 2.4648 24 6 7.2535 4.6266 0.3819 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.9982 3.1544 -1.3070 31 1 2.0698 1.5877 -2.1491 32 1 0.5489 2.1253 -1.3968 33 1 4.0029 0.9836 -0.7597 34 1 3.8571 0.8800 1.0112 35 1 3.4107 3.5590 0.2371 36 1 4.9659 6.0151 -0.5830 37 1 3.8513 5.0954 0.4606 38 1 5.0233 5.8776 2.4731 39 1 4.5741 7.2874 1.4831 40 1 6.9088 7.4903 2.2681 41 1 6.8596 7.3084 0.4983 42 1 11.9597 4.6971 1.5882 43 1 7.8084 3.6963 0.5042 44 1 7.5406 5.1026 -0.5556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200250621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:16 Heat of formation + Delta-G solvation = 2.426574 kcal Electronic energy + Delta-G solvation = -21197.232299 eV Core-core repulsion = 18275.111706 eV Total energy + Delta-G solvation = -2922.120593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.80939 -37.99730 -35.73040 -33.30000 -32.47290 -30.75798 -30.05959 -27.22563 -25.91917 -24.97125 -23.22845 -22.96543 -21.25384 -20.39402 -19.28519 -18.01464 -16.97898 -16.69372 -15.75215 -15.18635 -14.96406 -14.57487 -14.37798 -14.16572 -13.90873 -13.82969 -13.31163 -13.12270 -12.88901 -12.52981 -12.41336 -12.34151 -12.05498 -11.52681 -11.37996 -11.15034 -11.06071 -11.02002 -10.92399 -10.71039 -10.60662 -10.28458 -10.06480 -9.69947 -9.32185 -9.11747 -8.61012 -8.42231 -7.31315 -6.90847 -6.01667 -4.10883 1.78031 2.29760 2.96503 3.40760 3.60682 3.71225 3.89682 4.36769 4.47548 4.55215 4.56753 4.70635 4.97167 4.98993 5.09303 5.14487 5.17193 5.25284 5.26433 5.43540 5.51481 5.58309 5.62800 5.63848 5.71771 5.73058 5.78149 5.93685 5.96642 6.00100 6.04361 6.21011 6.25576 6.41577 6.49824 6.57245 6.82969 7.03018 7.12760 7.37729 7.53854 7.72494 8.48504 8.93994 9.55223 11.04867 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.004837 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.767193 B = 5787.826762 C = 6687.020719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.106 4.106 4 H 0.075 0.925 5 C -0.151 4.151 6 C 0.131 3.869 7 N -0.697 5.697 8 C 0.563 3.437 9 S -0.667 6.667 10 N -0.556 5.556 11 C 0.097 3.903 12 C -0.134 4.134 13 C -0.104 4.104 14 C 0.010 3.990 15 H 0.033 0.967 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.873 3.127 21 H -0.258 1.258 22 H -0.302 1.302 23 H -0.248 1.248 24 C 0.088 3.912 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.391 0.609 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.265 0.735 43 H 0.118 0.882 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.692 -3.796 -4.362 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.125 4.125 4 H 0.093 0.907 5 C -0.208 4.208 6 C 0.007 3.993 7 N -0.331 5.331 8 C 0.203 3.797 9 S -0.539 6.539 10 N -0.264 5.264 11 C -0.028 4.028 12 C -0.172 4.172 13 C -0.141 4.141 14 C -0.010 4.010 15 H 0.051 0.949 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.702 3.298 21 H -0.183 1.183 22 H -0.230 1.230 23 H -0.172 1.172 24 C -0.033 4.033 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.230 0.770 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.136 0.864 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.800 -4.671 -4.298 23.667 hybrid contribution -0.967 0.087 -0.026 0.971 sum -23.766 -4.584 -4.325 24.588 Atomic orbital electron populations 1.21811 0.95566 1.01751 1.01858 1.21464 0.95978 0.95057 1.02884 1.21464 0.94335 0.97768 0.98922 0.90687 1.21927 1.01568 1.00158 0.97134 1.21705 0.92461 0.80840 1.04296 1.45096 1.04173 1.10357 1.73510 1.22272 0.87000 0.89698 0.80733 1.93389 1.51770 1.33751 1.75022 1.47914 1.10430 1.01742 1.66288 1.22035 0.91604 0.88322 1.00878 1.22058 0.99639 0.98322 0.97201 1.21505 0.91472 0.99330 1.01841 1.19470 0.96480 0.91640 0.93402 0.94862 1.20838 0.87223 0.95617 1.52404 0.90569 1.25113 0.94825 0.99659 0.93421 1.69903 0.99535 1.34511 1.49218 0.87084 0.78353 0.83757 0.80649 1.18336 1.22977 1.17214 1.23451 0.74315 1.03743 1.01774 0.92784 0.92492 0.92606 0.91382 0.91335 0.93097 0.92116 0.92055 0.89992 0.89705 0.76964 0.90103 0.91468 0.91713 0.91105 0.91763 0.92327 0.92487 0.86449 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.55 16 2 C -0.12 -0.81 5.40 -26.73 -0.14 -0.96 16 3 C -0.11 -0.81 2.42 -90.62 -0.22 -1.03 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 5 C -0.15 -1.04 8.82 37.16 0.33 -0.71 16 6 C 0.13 1.47 4.53 -4.04 -0.02 1.45 16 7 N -0.70 -8.79 5.19 -62.03 -0.32 -9.11 16 8 C 0.56 9.99 7.71 -86.91 -0.67 9.32 16 9 S -0.67 -15.22 25.67 -107.50 -2.76 -17.98 16 10 N -0.56 -9.77 2.97 -174.52 -0.52 -10.29 16 11 C 0.10 1.23 6.42 -3.49 -0.02 1.21 16 12 C -0.13 -1.80 6.10 -26.39 -0.16 -1.96 16 13 C -0.10 -1.85 5.11 -26.69 -0.14 -1.99 16 14 C 0.01 0.22 1.84 -91.66 -0.17 0.06 16 15 H 0.03 0.82 7.20 -51.92 -0.37 0.45 16 16 C -0.52 -14.45 9.15 -34.44 -0.32 -14.77 16 17 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.07 2.16 5.45 -17.82 -0.10 2.06 16 19 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 20 Si 0.87 23.80 23.05 -169.99 -3.92 19.88 16 21 H -0.26 -7.16 6.92 56.52 0.39 -6.77 16 22 H -0.30 -8.37 7.11 56.52 0.40 -7.97 16 23 H -0.25 -6.77 6.43 56.52 0.36 -6.41 16 24 C 0.09 1.92 5.02 -3.71 -0.02 1.90 16 25 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 26 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.35 7.18 -51.93 -0.37 -0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 33 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 35 H 0.39 3.80 5.14 -40.82 -0.21 3.59 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.63 5.64 -51.92 -0.29 0.34 16 38 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.27 7.83 8.31 -40.82 -0.34 7.49 16 43 H 0.12 2.93 1.49 -49.62 -0.07 2.86 16 44 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -34.37 338.68 -10.44 -44.81 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.51 Total: 0.54 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.28 Total: -5.96 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.07 Total: -46.39 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -3.92 Total: 19.88 kcal Atomic # 16 Polarization: -15.22 SS G_CDS: -2.76 Total: -17.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.37 -10.44 -44.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200250621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.236 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds