Wall clock time and date at job start Tue Mar 31 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46912 * 2 1 4 4 H 1.09002 * 109.47204 * 55.00409 * 3 2 1 5 5 C 1.52996 * 109.47699 * 295.00204 * 3 2 1 6 6 C 1.53007 * 109.46775 * 175.00261 * 3 2 1 7 7 N 1.46501 * 109.46709 * 185.00210 * 6 3 2 8 8 C 1.34783 * 119.99402 * 180.27455 * 7 6 3 9 9 S 1.71202 * 120.00036 * 354.82315 * 8 7 6 10 10 N 1.34775 * 119.99488 * 174.82193 * 8 7 6 11 11 C 1.46918 * 120.63657 * 4.91359 * 10 8 7 12 12 C 1.53617 * 108.54834 * 126.36594 * 11 10 8 13 13 C 1.53039 * 109.24327 * 54.85488 * 12 11 10 14 14 C 1.53035 * 109.54076 * 298.51557 * 13 12 11 15 15 H 1.09007 * 109.49490 * 301.41468 * 14 13 12 16 16 C 1.50699 * 109.52546 * 181.33159 * 14 13 12 17 17 H 1.07997 * 119.99964 * 0.14415 * 16 14 13 18 18 C 1.37876 * 119.99909 * 180.14616 * 16 14 13 19 19 N 1.31514 * 120.00284 * 180.02562 * 18 16 14 20 20 Si 1.86806 * 119.99847 * 359.97438 * 18 16 14 21 21 H 1.48501 * 109.46810 * 90.00609 * 20 18 16 22 22 H 1.48504 * 109.46874 * 210.00046 * 20 18 16 23 23 H 1.48498 * 109.47327 * 330.00201 * 20 18 16 24 24 C 1.46933 * 120.62967 * 185.18633 * 10 8 7 25 25 H 1.09010 * 109.46976 * 299.99612 * 1 2 3 26 26 H 1.09000 * 109.47418 * 59.99193 * 1 2 3 27 27 H 1.08994 * 109.47345 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46725 * 240.00758 * 2 1 3 29 29 H 1.08995 * 109.47167 * 120.00437 * 2 1 3 30 30 H 1.08998 * 109.47351 * 179.97438 * 5 3 2 31 31 H 1.08996 * 109.47363 * 300.00399 * 5 3 2 32 32 H 1.09005 * 109.47020 * 59.99771 * 5 3 2 33 33 H 1.08993 * 109.46720 * 65.00360 * 6 3 2 34 34 H 1.09000 * 109.47138 * 304.99821 * 6 3 2 35 35 H 0.96994 * 120.00796 * 0.02562 * 7 6 3 36 36 H 1.09003 * 109.58717 * 246.20331 * 11 10 8 37 37 H 1.09007 * 109.58382 * 6.61854 * 11 10 8 38 38 H 1.09008 * 109.63558 * 294.86203 * 12 11 10 39 39 H 1.09003 * 109.46206 * 174.74729 * 12 11 10 40 40 H 1.09000 * 109.46161 * 178.49287 * 13 12 11 41 41 H 1.09003 * 109.44531 * 58.53001 * 13 12 11 42 42 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 43 43 H 1.09009 * 109.58462 * 353.37779 * 24 10 8 44 44 H 1.08995 * 109.58710 * 113.65383 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5649 1.4443 0.1257 7 7 4.0433 2.8238 0.2458 8 6 5.3629 3.0715 0.3633 9 16 6.4685 1.7720 0.5056 10 7 5.8121 4.3422 0.3688 11 6 4.8698 5.4694 0.3557 12 6 5.2032 6.3986 1.5326 13 6 6.6751 6.8094 1.4497 14 6 7.5603 5.5653 1.5530 15 1 7.3582 5.0521 2.4932 16 6 9.0102 5.9733 1.5041 17 1 9.2749 7.0162 1.4112 18 6 9.9989 5.0151 1.5780 19 7 11.2642 5.3711 1.5358 20 14 9.5410 3.2112 1.7393 21 1 9.4065 2.6119 0.3873 22 1 10.6019 2.4969 2.4940 23 1 8.2510 3.0909 2.4648 24 6 7.2535 4.6266 0.3819 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.9982 3.1544 -1.3070 31 1 2.0698 1.5877 -2.1491 32 1 0.5489 2.1253 -1.3968 33 1 4.0029 0.9836 -0.7597 34 1 3.8571 0.8800 1.0112 35 1 3.4107 3.5590 0.2371 36 1 4.9659 6.0151 -0.5830 37 1 3.8513 5.0954 0.4606 38 1 5.0233 5.8776 2.4731 39 1 4.5741 7.2874 1.4831 40 1 6.9088 7.4903 2.2681 41 1 6.8596 7.3084 0.4983 42 1 11.9597 4.6971 1.5882 43 1 7.8084 3.6963 0.5042 44 1 7.5406 5.1026 -0.5556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200250621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:16 Heat of formation + Delta-G solvation = -19.658923 kcal Electronic energy + Delta-G solvation = -21198.189998 eV Core-core repulsion = 18275.111706 eV Total energy + Delta-G solvation = -2923.078292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.15857 -39.02999 -36.86599 -35.02623 -33.92674 -32.46748 -30.77388 -28.12270 -27.43291 -26.48737 -24.43671 -24.06518 -22.69522 -21.29928 -20.64001 -19.26930 -18.87837 -18.31105 -16.73499 -16.62213 -16.06775 -15.81064 -15.63769 -15.61797 -15.18906 -14.97748 -14.71235 -14.51402 -14.06039 -13.92135 -13.33786 -13.12701 -12.97813 -12.91732 -12.77610 -12.43362 -12.24340 -12.14490 -12.11248 -11.83283 -11.76565 -11.61934 -11.54645 -11.42940 -11.17473 -11.07555 -10.76493 -9.84034 -9.01939 -8.72612 -8.28780 -6.41474 0.33908 0.84334 1.34333 1.44865 1.54054 1.67743 2.26572 2.29434 3.00642 3.63829 3.70683 3.86257 3.89444 3.93939 4.02357 4.32035 4.36974 4.41159 4.48176 4.49375 4.54404 4.60604 4.69326 4.71513 4.81174 4.84684 4.87281 4.91317 5.07086 5.10280 5.10888 5.15135 5.18106 5.23017 5.42449 5.46875 5.51191 5.53836 5.58080 5.61526 5.75124 6.25168 6.32913 6.68750 7.26687 8.76545 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.004837 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.767193 B = 5787.826762 C = 6687.020719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.093 4.093 4 H 0.089 0.911 5 C -0.150 4.150 6 C 0.131 3.869 7 N -0.662 5.662 8 C 0.584 3.416 9 S -0.773 6.773 10 N -0.555 5.555 11 C 0.090 3.910 12 C -0.124 4.124 13 C -0.102 4.102 14 C 0.009 3.991 15 H 0.014 0.986 16 C -0.512 4.512 17 H 0.053 0.947 18 C 0.031 3.969 19 N -0.937 5.937 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.314 1.314 23 H -0.253 1.253 24 C 0.095 3.905 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.117 0.883 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.265 0.735 43 H 0.088 0.912 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.321 -2.478 -4.964 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.112 4.112 4 H 0.108 0.892 5 C -0.207 4.207 6 C 0.007 3.993 7 N -0.296 5.296 8 C 0.219 3.781 9 S -0.647 6.647 10 N -0.261 5.261 11 C -0.033 4.033 12 C -0.162 4.162 13 C -0.140 4.140 14 C -0.010 4.010 15 H 0.032 0.968 16 C -0.550 4.550 17 H 0.071 0.929 18 C -0.168 4.168 19 N -0.577 5.577 20 Si 0.765 3.235 21 H -0.198 1.198 22 H -0.243 1.243 23 H -0.177 1.177 24 C -0.028 4.028 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.256 0.744 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.525 -3.327 -4.903 28.155 hybrid contribution 0.351 -0.234 0.143 0.445 sum -27.174 -3.561 -4.760 27.817 Atomic orbital electron populations 1.21787 0.94248 1.02176 1.02438 1.21474 0.97034 0.94576 1.02435 1.21405 0.91042 0.98539 1.00182 0.89233 1.21939 1.02694 1.00101 0.95995 1.21829 0.95070 0.79523 1.02864 1.45016 1.02323 1.11913 1.70356 1.21584 0.87835 0.88211 0.80499 1.93626 1.54916 1.36903 1.79207 1.47724 1.09663 1.02909 1.65839 1.22523 0.92255 0.86697 1.01861 1.22011 0.96673 1.00277 0.97265 1.21437 0.93849 0.96603 1.02088 1.19381 0.94578 0.94208 0.92883 0.96761 1.21237 0.89960 0.94249 1.49561 0.92870 1.25642 0.94927 1.02006 0.94219 1.69988 1.00366 1.35239 1.52083 0.86161 0.77060 0.80930 0.79395 1.19819 1.24251 1.17686 1.22858 0.77005 1.01860 1.01065 0.92318 0.91711 0.92398 0.91781 0.92052 0.92467 0.92921 0.90372 0.91326 0.91458 0.74354 0.87596 0.87113 0.92250 0.86436 0.92202 0.91685 0.92537 0.89464 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 71.98 0.70 -0.63 16 2 C -0.12 -1.39 5.40 30.60 0.17 -1.22 16 3 C -0.09 -1.11 2.42 -10.79 -0.03 -1.14 16 4 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 5 C -0.15 -1.46 8.82 71.98 0.63 -0.83 16 6 C 0.13 2.68 4.53 86.38 0.39 3.07 16 7 N -0.66 -14.47 5.19 -350.15 -1.82 -16.29 16 8 C 0.58 19.59 7.71 179.05 1.38 20.97 16 9 S -0.77 -35.92 25.67 -56.49 -1.45 -37.37 16 10 N -0.55 -17.93 2.97 -706.07 -2.09 -20.03 16 11 C 0.09 1.76 6.42 86.51 0.56 2.32 16 12 C -0.12 -2.70 6.10 30.81 0.19 -2.51 16 13 C -0.10 -3.36 5.11 30.62 0.16 -3.21 16 14 C 0.01 0.42 1.84 -11.47 -0.02 0.40 16 15 H 0.01 0.70 7.20 -2.38 -0.02 0.68 16 16 C -0.51 -28.73 9.15 25.60 0.23 -28.50 16 17 H 0.05 3.19 7.99 -2.91 -0.02 3.16 16 18 C 0.03 1.89 5.45 84.65 0.46 2.35 16 19 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 20 Si 0.93 52.31 23.05 68.60 1.58 53.89 16 21 H -0.27 -15.66 6.92 99.48 0.69 -14.97 16 22 H -0.31 -17.82 7.11 99.48 0.71 -17.12 16 23 H -0.25 -14.10 6.43 99.48 0.64 -13.47 16 24 C 0.09 4.07 5.02 86.36 0.43 4.51 16 25 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.06 0.48 6.56 -2.39 -0.02 0.47 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.49 7.18 -2.39 -0.02 0.48 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.55 6.57 -2.38 -0.02 0.53 16 33 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 34 H 0.07 1.69 7.90 -2.39 -0.02 1.67 16 35 H 0.41 5.70 5.14 -92.71 -0.48 5.22 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.11 1.25 5.64 -2.38 -0.01 1.23 16 38 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 43 H 0.09 4.40 1.49 -3.85 -0.01 4.40 16 44 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -80.81 338.68 2.17 -78.63 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.41 Total: 5.32 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.25 Total: -4.42 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -3.61 Total: -96.04 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 1.58 Total: 53.89 kcal Atomic # 16 Polarization: -35.92 SS G_CDS: -1.45 Total: -37.37 kcal Total: -80.81 2.17 -78.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200250621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.975 kcal (2) G-P(sol) polarization free energy of solvation -80.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds