Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50707 * 109.46707 * 153.10321 * 3 2 1 5 5 C 1.38257 * 120.00239 * 265.20752 * 4 3 2 6 6 C 1.38209 * 120.00061 * 180.25443 * 5 4 3 7 7 C 1.38256 * 120.00097 * 359.77431 * 6 5 4 8 8 C 1.38212 * 119.99847 * 0.02562 * 7 6 5 9 9 C 1.38209 * 119.99845 * 85.00327 * 4 3 2 10 10 C 1.50702 * 120.00104 * 359.97438 * 9 4 3 11 11 N 1.46903 * 109.46792 * 79.73186 * 10 9 4 12 12 C 1.46840 * 111.00469 * 66.04559 * 11 10 9 13 13 C 1.53041 * 109.52596 * 185.83969 * 12 11 10 14 14 C 1.53123 * 109.27643 * 300.82086 * 13 12 11 15 15 C 1.53118 * 109.16174 * 57.65272 * 14 13 12 16 16 H 1.09002 * 109.50277 * 62.32247 * 15 14 13 17 17 C 1.50697 * 109.50411 * 182.40360 * 15 14 13 18 18 H 1.08003 * 120.00232 * 114.50840 * 17 15 14 19 19 C 1.37879 * 120.00084 * 294.50621 * 17 15 14 20 20 N 1.31518 * 120.00021 * 162.89206 * 19 17 15 21 21 Si 1.86800 * 119.99945 * 342.89880 * 19 17 15 22 22 H 1.48505 * 109.47041 * 269.99511 * 21 19 17 23 23 H 1.48498 * 109.47207 * 149.99709 * 21 19 17 24 24 H 1.48498 * 109.47070 * 29.99465 * 21 19 17 25 25 C 1.46854 * 110.99841 * 190.25966 * 11 10 9 26 26 H 1.09001 * 109.47317 * 33.10939 * 3 2 1 27 27 H 1.08998 * 109.47281 * 273.10280 * 3 2 1 28 28 H 1.08008 * 119.99803 * 0.04753 * 5 4 3 29 29 H 1.07997 * 120.00018 * 179.79285 * 6 5 4 30 30 H 1.08000 * 120.00064 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.00036 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.47240 * 319.73296 * 10 9 4 33 33 H 1.09001 * 109.47295 * 199.72320 * 10 9 4 34 34 H 1.08999 * 109.46460 * 65.82233 * 12 11 10 35 35 H 1.09004 * 109.46311 * 305.85222 * 12 11 10 36 36 H 1.08996 * 109.50450 * 180.87911 * 13 12 11 37 37 H 1.09000 * 109.53606 * 60.77765 * 13 12 11 38 38 H 1.08997 * 109.52117 * 297.74889 * 14 13 12 39 39 H 1.08996 * 109.57134 * 177.59178 * 14 13 12 40 40 H 0.97000 * 119.99801 * 354.70190 * 20 19 17 41 41 H 1.08997 * 109.45992 * 54.13883 * 25 11 10 42 42 H 1.09003 * 109.45808 * 294.17266 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1097 1.2681 -0.6428 5 6 3.4344 1.2801 -1.9867 6 6 3.8995 2.4410 -2.5749 7 6 4.0356 3.5917 -1.8206 8 6 3.7070 3.5808 -0.4782 9 6 3.2412 2.4196 0.1102 10 6 2.8823 2.4079 1.5738 11 7 3.9847 1.8160 2.3435 12 6 5.1825 2.6633 2.2842 13 6 6.3487 1.9493 2.9713 14 6 5.9767 1.6603 4.4283 15 6 4.6991 0.8171 4.4631 16 1 4.8804 -0.1387 3.9716 17 6 4.2929 0.5779 5.8944 18 1 3.3720 0.9973 6.2718 19 6 5.0970 -0.1766 6.7223 20 7 4.9394 -0.1151 8.0266 21 14 6.4104 -1.2857 5.9914 22 1 5.8359 -2.6311 5.7357 23 1 7.5440 -1.4043 6.9433 24 1 6.8952 -0.7036 4.7142 25 6 3.5807 1.5640 3.7327 26 1 2.9718 -0.8600 -0.5614 27 1 2.9714 -0.0548 1.0261 28 1 3.3278 0.3812 -2.5760 29 1 4.1563 2.4495 -3.6239 30 1 4.3986 4.4990 -2.2804 31 1 3.8137 4.4795 0.1112 32 1 1.9780 1.8176 1.7215 33 1 2.7093 3.4291 1.9136 34 1 4.9850 3.6075 2.7917 35 1 5.4387 2.8577 1.2427 36 1 7.2335 2.5850 2.9409 37 1 6.5565 1.0115 2.4560 38 1 5.8074 2.5999 4.9542 39 1 6.7871 1.1138 4.9106 40 1 4.3112 0.5168 8.4099 41 1 2.6735 0.9600 3.7431 42 1 3.3906 2.5133 4.2334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235522708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = 42.290107 kcal Electronic energy + Delta-G solvation = -22307.430665 eV Core-core repulsion = 19251.594733 eV Total energy + Delta-G solvation = -3055.835932 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06215 -38.13900 -36.59429 -34.29918 -33.02789 -32.30074 -30.87404 -30.11538 -28.04575 -26.00760 -24.59943 -22.65064 -22.26285 -21.40178 -20.39862 -18.76417 -17.70632 -17.49784 -16.40610 -16.00532 -15.40652 -15.39121 -14.40211 -14.04143 -13.95866 -13.87156 -13.68771 -13.32058 -13.14487 -13.07994 -12.63537 -12.42534 -12.37823 -12.16294 -11.96531 -11.68245 -11.62549 -11.26455 -11.07405 -10.91505 -10.60537 -10.55643 -10.04882 -9.82808 -9.65758 -9.29298 -8.96413 -8.80689 -8.71441 -8.23385 -7.92062 -6.42045 -4.04717 1.15578 1.25108 2.75980 2.79435 3.44873 3.46852 3.52510 3.62697 4.13699 4.40399 4.53991 4.62428 4.70862 4.80452 4.91965 5.15787 5.20119 5.27652 5.45489 5.46393 5.48244 5.62200 5.64338 5.68012 5.85034 5.91648 5.94610 6.01148 6.14679 6.27154 6.32084 6.36047 6.38794 6.47304 6.54213 6.65365 6.83037 6.85517 6.92509 7.29379 7.42524 7.52485 7.55401 7.63816 8.20899 8.39773 8.91540 9.63490 10.95932 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.004793 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.732604 B = 5840.650122 C = 6420.795245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.215 3.785 3 C 0.005 3.995 4 C -0.068 4.068 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.116 4.116 8 C -0.114 4.114 9 C -0.055 4.055 10 C 0.084 3.916 11 N -0.534 5.534 12 C 0.062 3.938 13 C -0.118 4.118 14 C -0.118 4.118 15 C 0.029 3.971 16 H 0.031 0.969 17 C -0.600 4.600 18 H 0.053 0.947 19 C 0.034 3.966 20 N -0.909 5.909 21 Si 1.042 2.958 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.267 1.267 25 C 0.075 3.925 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.267 0.733 41 H 0.064 0.936 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 5.345 -20.507 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.102 4.102 3 C -0.034 4.034 4 C -0.070 4.070 5 C -0.126 4.126 6 C -0.142 4.142 7 C -0.134 4.134 8 C -0.133 4.133 9 C -0.055 4.055 10 C -0.043 4.043 11 N -0.258 5.258 12 C -0.066 4.066 13 C -0.156 4.156 14 C -0.156 4.156 15 C 0.010 3.990 16 H 0.049 0.951 17 C -0.638 4.638 18 H 0.071 0.929 19 C -0.171 4.171 20 N -0.543 5.543 21 Si 0.870 3.130 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.192 1.192 25 C -0.052 4.052 26 H 0.134 0.866 27 H 0.156 0.844 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.782 3.767 -20.285 20.647 hybrid contribution -0.933 2.077 0.068 2.278 sum -0.151 5.844 -20.218 21.046 Atomic orbital electron populations 1.81201 1.12928 1.08527 1.09192 1.29088 0.95041 0.93158 0.92942 1.18342 0.81543 0.97230 1.06309 1.19214 1.00638 0.93645 0.93505 1.21050 0.99172 0.98511 0.93886 1.21076 1.00324 0.93012 0.99824 1.21127 0.99910 0.98270 0.94091 1.21066 0.99374 0.97744 0.95078 1.19739 0.97625 0.92805 0.95362 1.21086 0.95138 0.98734 0.89359 1.62076 1.03706 1.45871 1.14161 1.22035 0.91062 0.93878 0.99610 1.21655 0.95841 1.00033 0.98096 1.22046 1.00071 1.00419 0.93077 1.19019 0.90299 0.94028 0.95671 0.95068 1.21967 1.09342 1.37348 0.95146 0.92911 1.25743 0.99380 0.97515 0.94464 1.70812 1.35218 1.36918 1.11367 0.84127 0.76496 0.76392 0.75992 1.21391 1.21586 1.19247 1.22180 0.99721 0.98720 0.84579 0.86631 0.84376 0.85774 0.86105 0.86172 0.86155 0.90283 0.94220 0.95668 0.91574 0.93033 0.91803 0.93473 0.92637 0.92302 0.91792 0.95846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.77 18.54 42.15 0.78 -5.99 16 2 C 0.22 2.71 14.60 -20.76 -0.30 2.41 16 3 C 0.01 0.05 5.21 -30.66 -0.16 -0.11 16 4 C -0.07 -0.72 5.09 -104.62 -0.53 -1.26 16 5 C -0.11 -0.99 9.68 -39.58 -0.38 -1.37 16 6 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 7 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 8 C -0.11 -1.20 8.57 -39.58 -0.34 -1.54 16 9 C -0.05 -0.64 4.58 -104.62 -0.48 -1.12 16 10 C 0.08 1.13 4.25 -4.97 -0.02 1.11 16 11 N -0.53 -8.32 3.95 -236.11 -0.93 -9.25 16 12 C 0.06 0.93 5.26 -3.84 -0.02 0.91 16 13 C -0.12 -1.97 6.09 -26.65 -0.16 -2.13 16 14 C -0.12 -2.45 4.72 -26.61 -0.13 -2.57 16 15 C 0.03 0.66 1.81 -91.69 -0.17 0.49 16 16 H 0.03 0.71 6.71 -51.93 -0.35 0.37 16 17 C -0.60 -16.32 8.83 -34.44 -0.30 -16.62 16 18 H 0.05 1.56 7.99 -52.48 -0.42 1.14 16 19 C 0.03 0.95 5.35 -17.82 -0.10 0.86 16 20 N -0.91 -27.67 13.70 55.43 0.76 -26.91 16 21 Si 1.04 24.59 26.31 -169.99 -4.47 20.12 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -5.71 5.50 56.52 0.31 -5.40 16 25 C 0.07 1.44 4.68 -3.83 -0.02 1.42 16 26 H 0.12 0.81 8.05 -51.93 -0.42 0.39 16 27 H 0.14 1.57 6.58 -51.93 -0.34 1.23 16 28 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 29 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.12 1.16 8.04 -52.49 -0.42 0.74 16 32 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 33 H 0.04 0.53 7.98 -51.93 -0.41 0.11 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.89 6.32 -51.93 -0.33 0.56 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.21 5.09 -51.93 -0.26 0.94 16 40 H 0.27 8.12 8.73 -40.82 -0.36 7.76 16 41 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -30.90 335.93 -9.04 -39.94 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.34 Total: -0.52 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -3.90 Total: -22.45 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.61 Total: -42.15 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -4.47 Total: 20.12 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.90 -9.04 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.235 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds