Wall clock time and date at job start Tue Mar 31 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50707 * 109.46707 * 153.10321 * 3 2 1 5 5 C 1.38257 * 120.00239 * 265.20752 * 4 3 2 6 6 C 1.38209 * 120.00061 * 180.25443 * 5 4 3 7 7 C 1.38256 * 120.00097 * 359.77431 * 6 5 4 8 8 C 1.38212 * 119.99847 * 0.02562 * 7 6 5 9 9 C 1.38209 * 119.99845 * 85.00327 * 4 3 2 10 10 C 1.50702 * 120.00104 * 359.97438 * 9 4 3 11 11 N 1.46903 * 109.46792 * 79.73186 * 10 9 4 12 12 C 1.46840 * 111.00469 * 66.04559 * 11 10 9 13 13 C 1.53041 * 109.52596 * 185.83969 * 12 11 10 14 14 C 1.53123 * 109.27643 * 300.82086 * 13 12 11 15 15 C 1.53118 * 109.16174 * 57.65272 * 14 13 12 16 16 H 1.09002 * 109.50277 * 62.32247 * 15 14 13 17 17 C 1.50697 * 109.50411 * 182.40360 * 15 14 13 18 18 H 1.08003 * 120.00232 * 114.50840 * 17 15 14 19 19 C 1.37879 * 120.00084 * 294.50621 * 17 15 14 20 20 N 1.31518 * 120.00021 * 162.89206 * 19 17 15 21 21 Si 1.86800 * 119.99945 * 342.89880 * 19 17 15 22 22 H 1.48505 * 109.47041 * 269.99511 * 21 19 17 23 23 H 1.48498 * 109.47207 * 149.99709 * 21 19 17 24 24 H 1.48498 * 109.47070 * 29.99465 * 21 19 17 25 25 C 1.46854 * 110.99841 * 190.25966 * 11 10 9 26 26 H 1.09001 * 109.47317 * 33.10939 * 3 2 1 27 27 H 1.08998 * 109.47281 * 273.10280 * 3 2 1 28 28 H 1.08008 * 119.99803 * 0.04753 * 5 4 3 29 29 H 1.07997 * 120.00018 * 179.79285 * 6 5 4 30 30 H 1.08000 * 120.00064 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.00036 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.47240 * 319.73296 * 10 9 4 33 33 H 1.09001 * 109.47295 * 199.72320 * 10 9 4 34 34 H 1.08999 * 109.46460 * 65.82233 * 12 11 10 35 35 H 1.09004 * 109.46311 * 305.85222 * 12 11 10 36 36 H 1.08996 * 109.50450 * 180.87911 * 13 12 11 37 37 H 1.09000 * 109.53606 * 60.77765 * 13 12 11 38 38 H 1.08997 * 109.52117 * 297.74889 * 14 13 12 39 39 H 1.08996 * 109.57134 * 177.59178 * 14 13 12 40 40 H 0.97000 * 119.99801 * 354.70190 * 20 19 17 41 41 H 1.08997 * 109.45992 * 54.13883 * 25 11 10 42 42 H 1.09003 * 109.45808 * 294.17266 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1097 1.2681 -0.6428 5 6 3.4344 1.2801 -1.9867 6 6 3.8995 2.4410 -2.5749 7 6 4.0356 3.5917 -1.8206 8 6 3.7070 3.5808 -0.4782 9 6 3.2412 2.4196 0.1102 10 6 2.8823 2.4079 1.5738 11 7 3.9847 1.8160 2.3435 12 6 5.1825 2.6633 2.2842 13 6 6.3487 1.9493 2.9713 14 6 5.9767 1.6603 4.4283 15 6 4.6991 0.8171 4.4631 16 1 4.8804 -0.1387 3.9716 17 6 4.2929 0.5779 5.8944 18 1 3.3720 0.9973 6.2718 19 6 5.0970 -0.1766 6.7223 20 7 4.9394 -0.1151 8.0266 21 14 6.4104 -1.2857 5.9914 22 1 5.8359 -2.6311 5.7357 23 1 7.5440 -1.4043 6.9433 24 1 6.8952 -0.7036 4.7142 25 6 3.5807 1.5640 3.7327 26 1 2.9718 -0.8600 -0.5614 27 1 2.9714 -0.0548 1.0261 28 1 3.3278 0.3812 -2.5760 29 1 4.1563 2.4495 -3.6239 30 1 4.3986 4.4990 -2.2804 31 1 3.8137 4.4795 0.1112 32 1 1.9780 1.8176 1.7215 33 1 2.7093 3.4291 1.9136 34 1 4.9850 3.6075 2.7917 35 1 5.4387 2.8577 1.2427 36 1 7.2335 2.5850 2.9409 37 1 6.5565 1.0115 2.4560 38 1 5.8074 2.5999 4.9542 39 1 6.7871 1.1138 4.9106 40 1 4.3112 0.5168 8.4099 41 1 2.6735 0.9600 3.7431 42 1 3.3906 2.5133 4.2334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235522708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:54 Heat of formation + Delta-G solvation = 24.615996 kcal Electronic energy + Delta-G solvation = -22308.197072 eV Core-core repulsion = 19251.594733 eV Total energy + Delta-G solvation = -3056.602339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95198 -39.43810 -37.60578 -35.81845 -34.30217 -33.61602 -32.00102 -31.66511 -28.85923 -27.08736 -26.47857 -23.93356 -23.04239 -22.82602 -21.49163 -20.36190 -19.60111 -18.58149 -17.24389 -16.89099 -16.65591 -16.34512 -15.82728 -15.51828 -15.12709 -14.96644 -14.81324 -14.63261 -14.40713 -14.20685 -14.06590 -13.74912 -13.56752 -13.30791 -13.14543 -12.90157 -12.69035 -12.59659 -12.47015 -12.18506 -11.79723 -11.75248 -11.64449 -11.51212 -11.36792 -10.93919 -10.68698 -10.39313 -9.68321 -9.59017 -9.21271 -8.69072 -6.31955 0.41476 0.53376 1.53751 1.58696 1.77807 1.79445 1.81165 2.56639 2.72846 3.09652 3.12494 3.38522 3.77225 3.93185 4.02702 4.12904 4.19404 4.25261 4.33239 4.37281 4.49808 4.51456 4.61251 4.69423 4.76131 4.79451 4.85314 4.88726 4.93512 5.02027 5.10695 5.15354 5.22877 5.28717 5.33764 5.56269 5.61647 5.69079 5.76038 5.81831 5.93549 6.08486 6.14753 6.22639 6.33710 6.59697 6.62479 7.45570 8.67572 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.004793 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.732604 B = 5840.650122 C = 6420.795245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.239 3.761 3 C 0.009 3.991 4 C -0.078 4.078 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.124 4.124 9 C -0.073 4.073 10 C 0.090 3.910 11 N -0.525 5.525 12 C 0.064 3.936 13 C -0.111 4.111 14 C -0.117 4.117 15 C 0.028 3.972 16 H 0.037 0.963 17 C -0.601 4.601 18 H 0.010 0.990 19 C -0.020 4.020 20 N -0.945 5.945 21 Si 1.083 2.917 22 H -0.275 1.275 23 H -0.293 1.293 24 H -0.228 1.228 25 C 0.087 3.913 26 H 0.153 0.847 27 H 0.126 0.874 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.020 0.980 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.046 0.954 40 H 0.250 0.750 41 H 0.055 0.945 42 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 5.192 -24.704 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.078 4.078 3 C -0.031 4.031 4 C -0.080 4.080 5 C -0.126 4.126 6 C -0.140 4.140 7 C -0.135 4.135 8 C -0.143 4.143 9 C -0.074 4.074 10 C -0.037 4.037 11 N -0.249 5.249 12 C -0.063 4.063 13 C -0.149 4.149 14 C -0.155 4.155 15 C 0.008 3.992 16 H 0.055 0.945 17 C -0.640 4.640 18 H 0.028 0.972 19 C -0.217 4.217 20 N -0.582 5.582 21 Si 0.904 3.096 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.151 1.151 25 C -0.041 4.041 26 H 0.171 0.829 27 H 0.144 0.856 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 2.881 3.640 -24.512 24.948 hybrid contribution -1.668 2.221 1.350 3.088 sum 1.213 5.861 -23.162 23.923 Atomic orbital electron populations 1.81219 1.14687 1.10523 1.11073 1.29606 0.95473 0.91420 0.91271 1.18525 0.79496 0.98785 1.06245 1.19297 1.01128 0.93205 0.94325 1.21369 0.98158 0.99808 0.93250 1.21464 0.98997 0.92492 1.01094 1.21423 0.99151 0.99462 0.93471 1.21185 0.99635 0.97431 0.96018 1.19607 0.99659 0.94096 0.94013 1.21018 0.93986 0.98029 0.90704 1.62021 1.04723 1.46762 1.11390 1.22075 0.90122 0.93185 1.00955 1.21610 0.97301 1.01255 0.94699 1.21925 0.98477 0.98922 0.96213 1.18966 0.92288 0.95154 0.92771 0.94475 1.22249 1.07503 1.36197 0.98016 0.97198 1.27246 1.01592 0.98798 0.94020 1.70952 1.36347 1.37942 1.12928 0.83664 0.73866 0.75228 0.76883 1.20117 1.21975 1.15094 1.21841 0.98304 0.97190 0.86773 0.82927 0.85592 0.83275 0.83508 0.84064 0.85858 0.91270 0.94547 0.96215 0.88866 0.90457 0.90902 0.95259 0.93527 0.94166 0.92679 0.97875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.16 18.54 20.01 0.37 -14.79 16 2 C 0.24 5.74 14.60 89.44 1.31 7.05 16 3 C 0.01 0.15 5.21 28.05 0.15 0.30 16 4 C -0.08 -1.41 5.09 -19.86 -0.10 -1.51 16 5 C -0.11 -1.51 9.68 22.27 0.22 -1.29 16 6 C -0.12 -1.57 10.05 22.27 0.22 -1.34 16 7 C -0.12 -1.68 10.05 22.27 0.22 -1.45 16 8 C -0.12 -2.25 8.57 22.27 0.19 -2.06 16 9 C -0.07 -1.54 4.58 -19.87 -0.09 -1.63 16 10 C 0.09 2.33 4.25 85.56 0.36 2.69 16 11 N -0.52 -15.64 3.95 -900.91 -3.56 -19.20 16 12 C 0.06 1.76 5.26 86.33 0.45 2.22 16 13 C -0.11 -3.32 6.09 30.65 0.19 -3.13 16 14 C -0.12 -4.72 4.72 30.67 0.14 -4.57 16 15 C 0.03 1.24 1.81 -11.49 -0.02 1.21 16 16 H 0.04 1.64 6.71 -2.39 -0.02 1.62 16 17 C -0.60 -33.98 8.83 25.60 0.23 -33.75 16 18 H 0.01 0.61 7.99 -2.91 -0.02 0.59 16 19 C -0.02 -1.13 5.35 84.65 0.45 -0.68 16 20 N -0.95 -59.95 13.70 21.45 0.29 -59.66 16 21 Si 1.08 49.04 26.31 68.60 1.80 50.85 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.23 -8.81 5.50 99.48 0.55 -8.27 16 25 C 0.09 3.38 4.68 86.32 0.40 3.79 16 26 H 0.15 1.51 8.05 -2.39 -0.02 1.49 16 27 H 0.13 2.62 6.58 -2.39 -0.02 2.60 16 28 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 29 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 30 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.12 2.08 8.04 -2.91 -0.02 2.06 16 32 H 0.07 1.90 6.53 -2.39 -0.02 1.89 16 33 H 0.04 0.96 7.98 -2.39 -0.02 0.94 16 34 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 2.14 6.32 -2.38 -0.02 2.12 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.93 5.09 -2.39 -0.01 1.92 16 40 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 41 H 0.05 2.21 8.01 -2.39 -0.02 2.19 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -70.84 335.93 4.04 -66.80 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.81 Total: 10.17 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 4.32 Total: -34.17 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -2.89 Total: -93.65 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.80 Total: 50.85 kcal Total: -70.84 4.04 -66.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.414 kcal (2) G-P(sol) polarization free energy of solvation -70.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds