Wall clock time and date at job start Tue Mar 31 2020 05:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99720 * 2 1 4 4 H 1.48497 * 109.47256 * 264.99461 * 3 2 1 5 5 H 1.48493 * 109.47132 * 25.00042 * 3 2 1 6 6 H 1.48502 * 109.46848 * 144.99570 * 3 2 1 7 7 C 1.38815 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00097 * 187.35209 * 7 2 1 9 9 N 1.36935 * 119.99526 * 7.34988 * 7 2 1 10 10 C 1.46822 * 125.37895 * 5.73245 * 9 7 2 11 11 C 1.51323 * 107.25613 * 181.21458 * 10 9 7 12 12 H 1.09004 * 108.82960 * 258.81103 * 11 10 9 13 13 C 1.50780 * 109.57345 * 140.23454 * 11 10 9 14 14 C 1.49897 * 114.43367 * 286.63338 * 13 11 10 15 15 C 1.51606 * 112.97730 * 307.05308 * 14 13 11 16 16 N 1.44514 * 112.73213 * 40.67740 * 15 14 13 17 17 C 1.34773 * 116.64629 * 154.44184 * 16 15 14 18 18 O 1.21281 * 119.99566 * 173.90384 * 17 16 15 19 19 C 1.50699 * 120.00367 * 353.89778 * 17 16 15 20 20 C 1.52997 * 109.47130 * 180.02562 * 19 17 16 21 21 C 1.53000 * 109.47035 * 180.02562 * 20 19 17 22 22 F 1.39908 * 109.47108 * 180.02562 * 21 20 19 23 23 C 1.44112 * 126.69729 * 334.45972 * 16 15 14 24 24 H 1.09005 * 109.48937 * 255.23780 * 23 16 15 25 25 C 1.46907 * 125.37095 * 185.75789 * 9 7 2 26 26 H 0.96998 * 120.00434 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.84649 * 300.54988 * 10 9 7 28 28 H 1.09002 * 109.84706 * 61.46966 * 10 9 7 29 29 H 1.08997 * 108.68184 * 49.23265 * 13 11 10 30 30 H 1.08997 * 108.67962 * 167.30696 * 13 11 10 31 31 H 1.09003 * 109.79948 * 185.19263 * 14 13 11 32 32 H 1.08994 * 107.16770 * 67.08844 * 14 13 11 33 33 H 1.08996 * 108.83376 * 279.83339 * 15 14 13 34 34 H 1.09000 * 108.82907 * 161.50997 * 15 14 13 35 35 H 1.08995 * 109.47219 * 300.00590 * 19 17 16 36 36 H 1.09002 * 109.47153 * 60.00765 * 19 17 16 37 37 H 1.08995 * 109.47498 * 300.00354 * 20 19 17 38 38 H 1.08999 * 109.47011 * 60.00430 * 20 19 17 39 39 H 1.09003 * 109.47151 * 300.00022 * 21 20 19 40 40 H 1.09002 * 109.47401 * 60.00606 * 21 20 19 41 41 H 1.08990 * 110.08904 * 42.84853 * 25 9 7 42 42 H 1.08996 * 110.08835 * 281.26329 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.6034 1.9855 -1.3947 5 1 1.3987 2.6809 0.5917 6 1 3.4908 1.4731 0.8032 7 6 2.0103 -1.2021 -0.0005 8 1 3.0836 -1.2060 0.1191 9 7 1.3341 -2.3831 -0.1528 10 6 -0.0998 -2.5104 -0.4418 11 6 -0.4173 -3.9890 -0.4952 12 1 -0.4823 -4.2974 -1.5386 13 6 -1.7490 -4.2438 0.1646 14 6 -1.7306 -4.1376 1.6596 15 6 -0.6587 -4.9968 2.3009 16 7 0.5874 -4.9735 1.5694 17 6 1.7068 -5.2317 2.2741 18 8 2.7717 -5.3373 1.7034 19 6 1.6354 -5.3891 3.7712 20 6 3.0343 -5.6738 4.3213 21 6 2.9617 -5.8343 5.8412 22 9 4.2410 -6.0941 6.3444 23 6 0.7562 -4.7021 0.1642 24 1 0.9590 -5.6336 -0.3643 25 6 1.9287 -3.7226 -0.0522 26 1 -0.4851 0.8400 0.0004 27 1 -0.6803 -2.0357 0.3493 28 1 -0.3273 -2.0422 -1.3994 29 1 -2.4787 -3.5420 -0.2393 30 1 -2.0697 -5.2573 -0.0764 31 1 -2.7023 -4.4243 2.0621 32 1 -1.5414 -3.0928 1.9057 33 1 -1.0167 -6.0250 2.3534 34 1 -0.4788 -4.6370 3.3139 35 1 1.2507 -4.4710 4.2151 36 1 0.9719 -6.2179 4.0181 37 1 3.4195 -6.5918 3.8775 38 1 3.6975 -4.8448 4.0745 39 1 2.5764 -4.9164 6.2854 40 1 2.2986 -6.6635 6.0878 41 1 2.6134 -3.7656 0.7947 42 1 2.4563 -3.9682 -0.9738 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754873820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:36 Heat of formation + Delta-G solvation = -59.456027 kcal Electronic energy + Delta-G solvation = -23911.302829 eV Core-core repulsion = 20420.285629 eV Total energy + Delta-G solvation = -3491.017200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.66555 -40.71019 -37.98373 -35.49665 -34.03532 -33.17219 -32.20967 -29.63557 -28.09340 -26.40992 -25.72163 -24.05557 -22.51473 -21.81408 -20.63661 -19.31068 -17.75988 -17.20252 -16.65164 -16.53141 -16.05398 -15.78121 -15.21730 -14.81815 -14.57403 -14.52674 -14.09905 -13.67198 -13.60337 -13.47860 -12.92237 -12.24679 -12.11377 -11.98555 -11.73771 -11.70285 -11.44576 -11.15314 -10.97688 -10.95322 -10.79289 -10.71755 -10.53478 -10.29374 -10.14740 -9.98013 -9.90194 -9.53959 -9.10516 -8.54666 -8.10212 -6.71313 -5.65105 -2.99334 2.88232 3.32070 3.43072 3.48186 3.49654 4.40566 4.55536 4.66406 4.68036 4.87109 4.92614 5.02107 5.09121 5.19285 5.23466 5.34762 5.39243 5.43423 5.52697 5.58848 5.69315 5.72174 5.83363 5.93602 6.02334 6.08292 6.19670 6.24232 6.34299 6.46181 6.55442 6.63286 6.81527 6.94264 7.31962 7.48715 7.68445 7.71450 7.86659 8.34143 8.50495 9.28356 9.89848 10.55167 11.44153 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.005804 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.690239 B = 4823.070669 C = 6021.902021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.175 3.825 11 C -0.114 4.114 12 H 0.071 0.929 13 C -0.097 4.097 14 C -0.131 4.131 15 C 0.119 3.881 16 N -0.582 5.582 17 C 0.505 3.495 18 O -0.530 6.530 19 C -0.139 4.139 20 C -0.138 4.138 21 C 0.062 3.938 22 F -0.220 7.220 23 C 0.150 3.850 24 H 0.062 0.938 25 C 0.114 3.886 26 H 0.250 0.750 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 -12.976 8.311 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.349 4.349 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.050 3.950 11 C -0.133 4.133 12 H 0.089 0.911 13 C -0.135 4.135 14 C -0.169 4.169 15 C -0.005 4.005 16 N -0.315 5.315 17 C 0.293 3.707 18 O -0.408 6.408 19 C -0.179 4.179 20 C -0.177 4.177 21 C 0.007 3.993 22 F -0.201 7.201 23 C 0.046 3.954 24 H 0.080 0.920 25 C -0.012 4.012 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.027 -12.804 7.986 15.618 hybrid contribution 0.254 1.002 -0.134 1.043 sum -3.774 -11.802 7.852 14.669 Atomic orbital electron populations 1.69941 1.04826 1.24756 1.57612 1.24752 0.95651 0.97508 1.02671 0.86172 0.78617 0.83572 0.77672 1.21657 1.21806 1.20799 1.19052 0.90922 0.82749 1.42128 0.90686 1.44363 1.05016 1.00139 1.83381 1.20815 0.86053 0.87850 1.00282 1.21142 0.93298 1.00148 0.98750 0.91069 1.20225 0.97401 1.00926 0.94994 1.20839 0.97683 1.01823 0.96567 1.20797 0.84780 0.99381 0.95495 1.46628 1.06613 1.69063 1.09155 1.20496 0.83896 0.76962 0.89395 1.90644 1.29089 1.49378 1.71643 1.21615 0.98714 1.03974 0.93582 1.21908 0.97240 1.04924 0.93590 1.22015 0.80470 1.02334 0.94463 1.92765 1.42705 1.95855 1.88792 1.20821 0.97385 0.97515 0.79697 0.92007 1.22017 0.94374 0.84904 0.99917 0.93980 0.91490 0.95536 0.91082 0.93564 0.90872 0.90577 0.92901 0.90851 0.88459 0.89007 0.90097 0.89746 0.90710 0.90919 0.90822 0.96076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.41 55.49 0.58 -26.40 16 2 C -0.01 -0.29 5.45 -17.43 -0.09 -0.38 16 3 Si 0.91 22.58 29.56 -169.99 -5.02 17.55 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.22 -6.34 10.24 -15.06 -0.15 -6.49 16 8 H 0.08 2.15 7.84 -52.49 -0.41 1.73 16 9 N -0.60 -15.87 3.39 -172.86 -0.59 -16.46 16 10 C 0.17 4.18 4.84 -4.71 -0.02 4.16 16 11 C -0.11 -2.09 2.88 -92.92 -0.27 -2.36 16 12 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.10 -1.44 4.95 -29.38 -0.15 -1.58 16 14 C -0.13 -1.76 5.81 -28.98 -0.17 -1.93 16 15 C 0.12 1.48 5.74 -5.81 -0.03 1.44 16 16 N -0.58 -9.43 3.09 -169.84 -0.52 -9.95 16 17 C 0.50 8.22 6.89 -10.99 -0.08 8.15 16 18 O -0.53 -10.52 13.11 5.56 0.07 -10.44 16 19 C -0.14 -1.56 4.04 -27.88 -0.11 -1.67 16 20 C -0.14 -1.61 4.96 -26.73 -0.13 -1.74 16 21 C 0.06 0.58 7.55 37.16 0.28 0.86 16 22 F -0.22 -2.74 17.36 2.25 0.04 -2.70 16 23 C 0.15 2.80 3.28 -68.86 -0.23 2.57 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 C 0.11 2.62 6.23 -3.14 -0.02 2.60 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.07 1.75 5.38 -51.93 -0.28 1.47 16 28 H 0.03 0.71 7.95 -51.93 -0.41 0.29 16 29 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 30 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.26 7.10 -51.93 -0.37 0.89 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.78 6.06 -51.93 -0.31 0.47 16 35 H 0.10 1.01 7.40 -51.93 -0.38 0.63 16 36 H 0.09 0.75 7.91 -51.93 -0.41 0.34 16 37 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.81 4.96 -51.93 -0.26 1.55 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -33.13 323.40 -8.36 -41.49 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.62 Total: -1.59 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.17 Total: 3.63 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.53 Total: -52.81 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.13 -8.36 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754873820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.970 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds