Wall clock time and date at job start Tue Mar 31 2020 05:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99720 * 2 1 4 4 H 1.48497 * 109.47256 * 264.99461 * 3 2 1 5 5 H 1.48493 * 109.47132 * 25.00042 * 3 2 1 6 6 H 1.48502 * 109.46848 * 144.99570 * 3 2 1 7 7 C 1.38815 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00097 * 187.35209 * 7 2 1 9 9 N 1.36935 * 119.99526 * 7.34988 * 7 2 1 10 10 C 1.46822 * 125.37895 * 5.73245 * 9 7 2 11 11 C 1.51323 * 107.25613 * 181.21458 * 10 9 7 12 12 H 1.09004 * 108.82960 * 258.81103 * 11 10 9 13 13 C 1.50780 * 109.57345 * 140.23454 * 11 10 9 14 14 C 1.49897 * 114.43367 * 286.63338 * 13 11 10 15 15 C 1.51606 * 112.97730 * 307.05308 * 14 13 11 16 16 N 1.44514 * 112.73213 * 40.67740 * 15 14 13 17 17 C 1.34773 * 116.64629 * 154.44184 * 16 15 14 18 18 O 1.21281 * 119.99566 * 173.90384 * 17 16 15 19 19 C 1.50699 * 120.00367 * 353.89778 * 17 16 15 20 20 C 1.52997 * 109.47130 * 180.02562 * 19 17 16 21 21 C 1.53000 * 109.47035 * 180.02562 * 20 19 17 22 22 F 1.39908 * 109.47108 * 180.02562 * 21 20 19 23 23 C 1.44112 * 126.69729 * 334.45972 * 16 15 14 24 24 H 1.09005 * 109.48937 * 255.23780 * 23 16 15 25 25 C 1.46907 * 125.37095 * 185.75789 * 9 7 2 26 26 H 0.96998 * 120.00434 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.84649 * 300.54988 * 10 9 7 28 28 H 1.09002 * 109.84706 * 61.46966 * 10 9 7 29 29 H 1.08997 * 108.68184 * 49.23265 * 13 11 10 30 30 H 1.08997 * 108.67962 * 167.30696 * 13 11 10 31 31 H 1.09003 * 109.79948 * 185.19263 * 14 13 11 32 32 H 1.08994 * 107.16770 * 67.08844 * 14 13 11 33 33 H 1.08996 * 108.83376 * 279.83339 * 15 14 13 34 34 H 1.09000 * 108.82907 * 161.50997 * 15 14 13 35 35 H 1.08995 * 109.47219 * 300.00590 * 19 17 16 36 36 H 1.09002 * 109.47153 * 60.00765 * 19 17 16 37 37 H 1.08995 * 109.47498 * 300.00354 * 20 19 17 38 38 H 1.08999 * 109.47011 * 60.00430 * 20 19 17 39 39 H 1.09003 * 109.47151 * 300.00022 * 21 20 19 40 40 H 1.09002 * 109.47401 * 60.00606 * 21 20 19 41 41 H 1.08990 * 110.08904 * 42.84853 * 25 9 7 42 42 H 1.08996 * 110.08835 * 281.26329 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.6034 1.9855 -1.3947 5 1 1.3987 2.6809 0.5917 6 1 3.4908 1.4731 0.8032 7 6 2.0103 -1.2021 -0.0005 8 1 3.0836 -1.2060 0.1191 9 7 1.3341 -2.3831 -0.1528 10 6 -0.0998 -2.5104 -0.4418 11 6 -0.4173 -3.9890 -0.4952 12 1 -0.4823 -4.2974 -1.5386 13 6 -1.7490 -4.2438 0.1646 14 6 -1.7306 -4.1376 1.6596 15 6 -0.6587 -4.9968 2.3009 16 7 0.5874 -4.9735 1.5694 17 6 1.7068 -5.2317 2.2741 18 8 2.7717 -5.3373 1.7034 19 6 1.6354 -5.3891 3.7712 20 6 3.0343 -5.6738 4.3213 21 6 2.9617 -5.8343 5.8412 22 9 4.2410 -6.0941 6.3444 23 6 0.7562 -4.7021 0.1642 24 1 0.9590 -5.6336 -0.3643 25 6 1.9287 -3.7226 -0.0522 26 1 -0.4851 0.8400 0.0004 27 1 -0.6803 -2.0357 0.3493 28 1 -0.3273 -2.0422 -1.3994 29 1 -2.4787 -3.5420 -0.2393 30 1 -2.0697 -5.2573 -0.0764 31 1 -2.7023 -4.4243 2.0621 32 1 -1.5414 -3.0928 1.9057 33 1 -1.0167 -6.0250 2.3534 34 1 -0.4788 -4.6370 3.3139 35 1 1.2507 -4.4710 4.2151 36 1 0.9719 -6.2179 4.0181 37 1 3.4195 -6.5918 3.8775 38 1 3.6975 -4.8448 4.0745 39 1 2.5764 -4.9164 6.2854 40 1 2.2986 -6.6635 6.0878 41 1 2.6134 -3.7656 0.7947 42 1 2.4563 -3.9682 -0.9738 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754873820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:36 Heat of formation + Delta-G solvation = -80.785272 kcal Electronic energy + Delta-G solvation = -23912.227735 eV Core-core repulsion = 20420.285629 eV Total energy + Delta-G solvation = -3491.942105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.52045 -42.05000 -39.41510 -37.04314 -35.11410 -34.53799 -34.00661 -31.41710 -29.41794 -27.73038 -27.39944 -25.58368 -23.64619 -23.18160 -22.20192 -20.64724 -19.17101 -18.97502 -18.01833 -17.54796 -17.22324 -16.88200 -16.64216 -16.23959 -16.00306 -15.69927 -15.63876 -15.13435 -14.76890 -14.70263 -14.23269 -13.86685 -13.74297 -13.55631 -13.16916 -12.97307 -12.86117 -12.78807 -12.44207 -12.27349 -12.12810 -12.04311 -11.88758 -11.77716 -11.65494 -11.50487 -11.47127 -11.19137 -10.71545 -10.48665 -9.40083 -8.85739 -7.85535 -5.23119 1.41055 1.43422 1.51457 1.66334 2.14720 2.46486 3.28461 3.38052 3.65388 3.75125 3.77121 3.88622 3.93093 3.99853 4.06916 4.12577 4.19045 4.32005 4.41884 4.48957 4.59104 4.67189 4.72259 4.78187 4.81869 4.89042 4.99175 5.04819 5.05969 5.10098 5.25983 5.30169 5.32600 5.42675 5.49340 5.59285 5.79725 5.90225 6.22267 6.48375 7.09634 7.27730 7.77072 8.40378 9.21025 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.005804 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.690239 B = 4823.070669 C = 6021.902021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.056 4.056 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.065 0.935 9 N -0.621 5.621 10 C 0.187 3.813 11 C -0.105 4.105 12 H 0.079 0.921 13 C -0.097 4.097 14 C -0.127 4.127 15 C 0.108 3.892 16 N -0.588 5.588 17 C 0.491 3.509 18 O -0.578 6.578 19 C -0.127 4.127 20 C -0.136 4.136 21 C 0.063 3.937 22 F -0.240 7.240 23 C 0.163 3.837 24 H 0.076 0.924 25 C 0.110 3.890 26 H 0.248 0.752 27 H 0.043 0.957 28 H -0.013 1.013 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.034 0.966 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -14.631 10.178 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.250 4.250 3 Si 0.802 3.198 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.347 5.347 10 C 0.062 3.938 11 C -0.124 4.124 12 H 0.098 0.902 13 C -0.135 4.135 14 C -0.165 4.165 15 C -0.013 4.013 16 N -0.319 5.319 17 C 0.281 3.719 18 O -0.459 6.459 19 C -0.166 4.166 20 C -0.175 4.175 21 C 0.008 3.992 22 F -0.222 7.222 23 C 0.058 3.942 24 H 0.093 0.907 25 C -0.016 4.016 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.005 0.995 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -5.947 -14.479 9.872 18.506 hybrid contribution 0.878 1.538 -0.764 1.928 sum -5.069 -12.941 9.109 16.618 Atomic orbital electron populations 1.70139 1.05894 1.25229 1.57710 1.25530 0.96630 1.00473 1.02379 0.85176 0.77604 0.79409 0.77625 1.21329 1.21242 1.20096 1.19289 0.90958 0.84432 1.42907 0.91695 1.44644 1.06145 1.00706 1.83243 1.20616 0.84579 0.91525 0.97072 1.21063 0.95465 0.95779 1.00119 0.90233 1.20214 0.94501 1.02813 0.95946 1.20883 1.00299 0.99726 0.95588 1.21206 0.82674 1.01712 0.95729 1.46804 1.08364 1.68565 1.08181 1.21477 0.83103 0.75765 0.91538 1.90621 1.30815 1.51485 1.72970 1.21640 0.99217 1.06406 0.89323 1.21843 0.97017 1.02904 0.95690 1.22199 0.79929 1.04776 0.92288 1.92725 1.44489 1.96068 1.88880 1.20515 0.95053 0.96580 0.82088 0.90651 1.22079 0.96055 0.84912 0.98535 0.94256 0.93846 0.99525 0.91644 0.89938 0.86697 0.94732 0.88655 0.88624 0.87080 0.84368 0.91255 0.93310 0.88945 0.87309 0.92535 0.97505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.68 10.41 21.65 0.23 -56.46 16 2 C -0.06 -3.32 5.45 84.86 0.46 -2.85 16 3 Si 0.97 47.40 29.56 68.60 2.03 49.43 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.25 -14.84 10.24 84.03 0.86 -13.98 16 8 H 0.07 3.91 7.84 -2.91 -0.02 3.89 16 9 N -0.62 -34.23 3.39 -700.79 -2.37 -36.60 16 10 C 0.19 9.30 4.84 85.77 0.42 9.71 16 11 C -0.10 -3.81 2.88 -12.28 -0.04 -3.84 16 12 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 13 C -0.10 -2.62 4.95 28.88 0.14 -2.48 16 14 C -0.13 -2.99 5.81 29.14 0.17 -2.82 16 15 C 0.11 2.22 5.74 86.29 0.50 2.71 16 16 N -0.59 -17.83 3.09 -809.63 -2.50 -20.33 16 17 C 0.49 15.42 6.89 87.66 0.60 16.02 16 18 O -0.58 -23.49 13.11 -3.03 -0.04 -23.53 16 19 C -0.13 -2.46 4.04 29.85 0.12 -2.34 16 20 C -0.14 -3.00 4.96 30.59 0.15 -2.84 16 21 C 0.06 0.99 7.55 71.98 0.54 1.53 16 22 F -0.24 -5.66 17.36 44.97 0.78 -4.88 16 23 C 0.16 6.00 3.28 45.66 0.15 6.15 16 24 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 25 C 0.11 5.27 6.23 86.74 0.54 5.81 16 26 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 27 H 0.04 2.36 5.38 -2.39 -0.01 2.35 16 28 H -0.01 -0.76 7.95 -2.39 -0.02 -0.78 16 29 H 0.06 1.85 8.06 -2.39 -0.02 1.83 16 30 H 0.08 1.70 8.13 -2.39 -0.02 1.68 16 31 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.10 7.10 -2.39 -0.02 1.08 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 1.56 6.06 -2.39 -0.01 1.55 16 35 H 0.11 1.92 7.40 -2.39 -0.02 1.90 16 36 H 0.14 1.45 7.91 -2.39 -0.02 1.43 16 37 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 38 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 2.93 4.96 -2.40 -0.01 2.92 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -78.34 323.40 3.74 -74.60 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.00 Total: 6.99 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 4.62 Total: 10.79 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -4.65 Total: -113.39 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.04 Total: -23.53 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.78 Total: -4.88 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -78.34 3.74 -74.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754873820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.190 kcal (2) G-P(sol) polarization free energy of solvation -78.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds