Wall clock time and date at job start Tue Mar 31 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48502 * 109.47214 * 269.99711 * 3 2 1 5 5 H 1.48501 * 109.47474 * 29.99818 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00197 * 3 2 1 7 7 C 1.37872 * 120.00657 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00742 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46988 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46928 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99953 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00097 * 180.27545 * 13 12 11 16 16 C 1.46500 * 120.00431 * 179.72742 * 15 13 12 17 17 H 1.09006 * 110.01345 * 325.06595 * 16 15 13 18 18 C 1.53867 * 110.03490 * 86.45506 * 16 15 13 19 19 C 1.54265 * 106.60103 * 119.28684 * 18 16 15 20 20 C 1.54880 * 104.19210 * 23.61335 * 19 18 16 21 21 C 1.54258 * 110.03650 * 203.62515 * 16 15 13 22 22 H 1.08998 * 110.48835 * 335.78193 * 21 16 15 23 23 C 1.53008 * 110.49015 * 98.42412 * 21 16 15 24 24 C 1.52999 * 109.47255 * 185.00347 * 23 21 16 25 25 O 1.42899 * 109.47125 * 180.02562 * 24 23 21 26 26 H 0.96990 * 120.00229 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47477 * 59.99648 * 9 7 2 28 28 H 1.08997 * 109.47150 * 299.99542 * 9 7 2 29 29 H 1.09007 * 109.47300 * 60.00253 * 10 9 7 30 30 H 1.08997 * 109.47600 * 299.99716 * 10 9 7 31 31 H 1.08998 * 109.47202 * 60.00203 * 11 10 9 32 32 H 1.08997 * 109.47419 * 300.00101 * 11 10 9 33 33 H 0.97000 * 120.00410 * 0.02562 * 12 11 10 34 34 H 0.97000 * 120.00112 * 359.73180 * 15 13 12 35 35 H 1.09001 * 110.03607 * 238.57477 * 18 16 15 36 36 H 1.09006 * 110.03220 * 359.97438 * 18 16 15 37 37 H 1.08999 * 110.48465 * 142.29335 * 19 18 16 38 38 H 1.08995 * 110.48609 * 264.92963 * 19 18 16 39 39 H 1.09005 * 110.76107 * 80.37348 * 20 19 18 40 40 H 1.09004 * 110.75384 * 203.56038 * 20 19 18 41 41 H 1.08993 * 109.46699 * 304.99904 * 23 21 16 42 42 H 1.08996 * 109.46682 * 65.00389 * 23 21 16 43 43 H 1.09005 * 109.47189 * 300.00012 * 24 23 21 44 44 H 1.08993 * 109.47459 * 59.99645 * 24 23 21 45 45 H 0.96700 * 113.99798 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6619 0.0005 11 6 1.4806 -4.9870 0.0012 12 7 2.4327 -6.1005 0.0006 13 6 1.9835 -7.3712 0.0015 14 8 0.7881 -7.5934 0.0024 15 7 2.8594 -8.3955 0.0065 16 6 2.3712 -9.7768 0.0136 17 1 1.4553 -9.8457 0.6006 18 6 2.1110 -10.2513 -1.4268 19 6 3.0380 -11.4609 -1.6665 20 6 3.3247 -12.0070 -0.2459 21 6 3.4470 -10.7146 0.5989 22 1 4.4384 -10.2763 0.4843 23 6 3.1572 -11.0085 2.0723 24 6 4.3010 -11.8361 2.6619 25 8 4.0300 -12.1110 4.0378 26 1 -0.4850 0.8399 -0.0004 27 1 0.6249 -2.5571 -0.8896 28 1 0.6243 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8906 30 1 2.8722 -3.6042 -0.8894 31 1 0.8537 -5.0451 -0.8886 32 1 0.8542 -5.0446 0.8913 33 1 3.3864 -5.9232 0.0002 34 1 3.8130 -8.2183 0.0056 35 1 1.0691 -10.5513 -1.5387 36 1 2.3476 -9.4537 -2.1311 37 1 2.5328 -12.2148 -2.2704 38 1 3.9632 -11.1431 -2.1471 39 1 2.4963 -12.6217 0.1063 40 1 4.2569 -12.5719 -0.2301 41 1 3.0684 -10.0699 2.6193 42 1 2.2247 -11.5668 2.1547 43 1 4.3899 -12.7747 2.1148 44 1 5.2335 -11.2778 2.5794 45 1 4.7153 -12.6331 4.4769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186989829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:37 Heat of formation + Delta-G solvation = -144.869325 kcal Electronic energy + Delta-G solvation = -22074.312421 eV Core-core repulsion = 18703.051727 eV Total energy + Delta-G solvation = -3371.260694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30712 -39.54819 -37.66689 -36.91308 -35.20223 -34.71898 -33.06037 -32.81120 -29.15074 -28.03972 -27.57759 -24.94033 -23.34446 -22.35031 -22.23877 -21.20487 -20.93847 -19.14371 -18.55639 -18.17309 -17.67737 -16.79850 -16.56038 -16.28685 -16.12675 -15.82787 -15.37767 -15.28345 -14.85417 -14.58805 -14.27145 -14.15277 -13.74519 -13.60126 -13.32935 -12.86574 -12.71534 -12.54472 -12.48615 -12.36082 -12.13307 -11.96976 -11.68836 -11.66956 -11.61308 -11.54039 -11.43845 -11.29003 -11.12572 -10.80846 -10.55311 -10.35223 -9.74906 -8.19199 -6.30930 1.41719 1.43416 1.54310 1.72009 2.14926 2.42208 3.14461 3.21250 3.32194 3.58418 3.76314 3.93127 4.16230 4.17069 4.23069 4.32483 4.46472 4.46925 4.55790 4.56790 4.60819 4.61936 4.72448 4.77192 4.95678 4.96950 5.03184 5.07744 5.16755 5.17374 5.19831 5.26355 5.31055 5.47012 5.49280 5.54751 5.66817 5.71054 5.84414 6.03323 6.22725 6.86474 6.93993 7.13662 7.38684 7.60302 8.93080 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026004 B = 0.002422 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.513714 B =11556.634465 C =12130.800836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.099 4.099 11 C 0.150 3.850 12 N -0.731 5.731 13 C 0.696 3.304 14 O -0.642 6.642 15 N -0.724 5.724 16 C 0.160 3.840 17 H 0.060 0.940 18 C -0.137 4.137 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.081 4.081 22 H 0.104 0.896 23 C -0.114 4.114 24 C 0.077 3.923 25 O -0.603 6.603 26 H 0.263 0.737 27 H -0.008 1.008 28 H -0.009 1.009 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.412 0.588 34 H 0.411 0.589 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.217 -28.167 0.441 32.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.137 4.137 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.395 3.605 14 O -0.523 6.523 15 N -0.380 5.380 16 C 0.055 3.945 17 H 0.078 0.922 18 C -0.176 4.176 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.100 4.100 22 H 0.122 0.878 23 C -0.151 4.151 24 C 0.000 4.000 25 O -0.412 6.412 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.248 0.752 34 H 0.248 0.752 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 13.461 -27.911 0.316 30.989 hybrid contribution 0.745 1.141 0.144 1.370 sum 14.206 -26.770 0.461 30.309 Atomic orbital electron populations 1.70116 1.07993 1.27809 1.51718 1.26049 0.95758 1.03641 0.94794 0.85394 0.78667 0.78181 0.78469 1.19772 1.21075 1.18365 1.21677 0.93765 0.91948 1.50415 0.91447 1.18947 0.94470 0.93020 0.95038 1.21581 0.98400 0.91595 1.02132 1.21057 0.91389 0.84769 1.00275 1.45027 1.10790 1.03565 1.79248 1.16236 0.85185 0.81467 0.77579 1.90889 1.16599 1.84826 1.60027 1.45126 1.09077 1.04406 1.79440 1.21560 0.97504 0.79008 0.96434 0.92154 1.22575 1.00254 0.98944 0.95850 1.22323 0.99389 0.96132 0.97508 1.22582 1.03147 0.95602 0.93762 1.22114 0.98783 0.95892 0.93173 0.87822 1.21534 0.99011 0.99815 0.94788 1.22249 0.97143 0.99085 0.81526 1.86450 1.52046 1.77491 1.25237 0.92813 0.99000 0.99033 0.91366 0.91255 0.93669 0.93783 0.75173 0.75164 0.92662 0.92439 0.90770 0.90290 0.91189 0.88673 0.93238 0.92194 0.91592 0.92319 0.75277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.89 5.27 30.60 0.16 -3.73 16 11 C 0.15 5.56 5.67 86.38 0.49 6.05 16 12 N -0.73 -21.14 5.56 -478.52 -2.66 -23.80 16 13 C 0.70 21.70 8.56 179.06 1.53 23.23 16 14 O -0.64 -26.70 16.02 -4.01 -0.06 -26.76 16 15 N -0.72 -15.15 5.00 -454.37 -2.27 -17.42 16 16 C 0.16 3.15 2.79 45.71 0.13 3.28 16 17 H 0.06 1.60 7.30 -2.38 -0.02 1.58 16 18 C -0.14 -2.54 6.58 31.32 0.21 -2.33 16 19 C -0.12 -1.27 6.83 31.67 0.22 -1.06 16 20 C -0.11 -1.00 5.67 31.88 0.18 -0.82 16 21 C -0.08 -0.96 2.55 -9.72 -0.02 -0.98 16 22 H 0.10 0.84 7.73 -2.39 -0.02 0.82 16 23 C -0.11 -1.71 4.93 30.60 0.15 -1.56 16 24 C 0.08 0.84 6.93 71.98 0.50 1.33 16 25 O -0.60 -8.88 13.66 -148.98 -2.04 -10.91 16 26 H 0.26 15.28 8.31 -92.72 -0.77 14.51 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 29 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.41 8.77 8.49 -92.71 -0.79 7.98 16 34 H 0.41 5.58 8.36 -92.71 -0.77 4.80 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.21 7.92 -2.38 -0.02 1.19 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.69 7.97 -2.38 -0.02 0.68 16 40 H 0.09 0.44 8.06 -2.38 -0.02 0.42 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.05 8.02 -2.39 -0.02 1.03 16 43 H 0.07 0.46 7.56 -2.38 -0.02 0.44 16 44 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.40 1.97 9.12 -74.06 -0.68 1.29 16 Total: -1.00 -77.99 365.83 -1.59 -79.58 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -1.25 Total: 16.00 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.38 Total: -5.22 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.65 Total: -98.79 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -2.10 Total: -37.67 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -77.99 -1.59 -79.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186989829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.285 kcal (2) G-P(sol) polarization free energy of solvation -77.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds