Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50698 * 120.00348 * 2 1 4 4 N 1.46900 * 109.47395 * 124.62588 * 3 2 1 5 5 C 1.46903 * 111.00170 * 163.07403 * 4 3 2 6 6 C 1.50703 * 109.46587 * 293.95175 * 5 4 3 7 7 H 1.07993 * 120.00526 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99604 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00253 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99942 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47184 * 60.00023 * 10 8 6 12 12 H 1.48496 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47111 * 300.00261 * 10 8 6 14 14 C 1.46899 * 110.99811 * 287.02237 * 4 3 2 15 15 C 1.50704 * 109.47073 * 163.93701 * 14 4 3 16 16 C 1.34232 * 125.03380 * 95.14910 * 15 14 4 17 17 C 1.46492 * 106.99606 * 179.86092 * 16 15 14 18 18 C 1.39632 * 134.03275 * 180.11729 * 17 16 15 19 19 C 1.36624 * 119.76710 * 180.35917 * 18 17 16 20 20 C 1.38836 * 120.52634 * 359.94680 * 19 18 17 21 21 C 1.37756 * 120.66552 * 0.03190 * 20 19 18 22 22 C 1.39121 * 119.77699 * 359.97438 * 21 20 19 23 23 N 1.36832 * 125.03460 * 275.45546 * 15 14 4 24 24 C 1.46502 * 125.06075 * 359.97438 * 23 15 14 25 25 H 1.07994 * 120.00214 * 185.10759 * 1 2 3 26 26 H 1.08000 * 120.00129 * 5.09397 * 1 2 3 27 27 H 1.08001 * 120.00134 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47196 * 4.62383 * 3 2 1 29 29 H 1.09002 * 109.47555 * 244.62553 * 3 2 1 30 30 H 1.08996 * 109.47126 * 53.94964 * 5 4 3 31 31 H 1.09002 * 109.47393 * 173.95383 * 5 4 3 32 32 H 0.97000 * 120.00197 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47745 * 283.93467 * 14 4 3 34 34 H 1.09003 * 109.47269 * 43.93942 * 14 4 3 35 35 H 1.07995 * 126.50693 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.11706 * 0.32543 * 18 17 16 37 37 H 1.07994 * 119.73955 * 179.97438 * 19 18 17 38 38 H 1.07994 * 119.66554 * 180.02562 * 20 19 18 39 39 H 1.07995 * 120.10744 * 180.02562 * 21 20 19 40 40 H 1.09006 * 109.46771 * 94.42843 * 24 23 15 41 41 H 1.09005 * 109.47135 * 214.42265 * 24 23 15 42 42 H 1.08999 * 109.47580 * 334.43038 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9899 1.3356 1.1397 5 6 4.0098 2.3778 0.9613 6 6 4.8915 2.0227 -0.2081 7 1 4.7121 1.1140 -0.7634 8 6 5.9269 2.8584 -0.5695 9 7 6.1452 3.9652 0.1064 10 14 7.0195 2.4187 -2.0195 11 1 6.1934 2.3183 -3.2493 12 1 8.0505 3.4720 -2.1997 13 1 7.6836 1.1157 -1.7616 14 6 2.2639 1.5204 2.4033 15 6 3.1634 1.1582 3.5570 16 6 3.9026 2.0299 4.2609 17 6 4.6162 1.2594 5.2823 18 6 5.5160 1.5923 6.2968 19 6 6.0234 0.6121 7.1020 20 6 5.6506 -0.7129 6.9204 21 6 4.7641 -1.0634 5.9260 22 6 4.2351 -0.0816 5.0944 23 7 3.3522 -0.1087 4.0382 24 6 2.7096 -1.3143 3.5091 25 1 -0.5400 -0.9315 0.0833 26 1 -0.5400 0.9316 -0.0830 27 1 1.8499 -0.9353 -0.0004 28 1 1.3581 2.1319 0.0828 29 1 2.6266 1.3995 -0.9285 30 1 3.5226 3.3342 0.7717 31 1 4.6159 2.4514 1.8643 32 1 6.8738 4.5530 -0.1476 33 1 1.9553 2.5616 2.4963 34 1 1.3833 0.8781 2.4137 35 1 3.9591 3.0971 4.1052 36 1 5.8102 2.6210 6.4441 37 1 6.7196 0.8700 7.8863 38 1 6.0600 -1.4764 7.5652 39 1 4.4801 -2.0968 5.7931 40 1 3.3690 -1.7880 2.7818 41 1 2.5113 -2.0086 4.3258 42 1 1.7707 -1.0436 3.0262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602671424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = 88.621627 kcal Electronic energy + Delta-G solvation = -22174.356595 eV Core-core repulsion = 19120.529748 eV Total energy + Delta-G solvation = -3053.826846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98718 -37.52478 -36.40557 -33.37147 -32.60666 -32.16353 -30.10445 -29.43436 -27.21235 -26.31647 -25.53239 -23.83711 -21.71666 -21.32260 -20.45975 -19.36974 -19.20209 -16.65029 -16.49001 -16.04456 -15.35133 -15.09867 -14.74547 -14.64317 -14.01437 -13.74064 -13.63394 -13.35748 -13.21275 -12.74351 -12.61198 -12.55183 -12.09552 -11.92296 -11.60971 -11.54387 -11.10417 -11.00443 -10.88501 -10.85245 -10.68096 -10.51993 -10.33079 -9.87062 -9.33327 -9.23443 -8.98778 -8.42389 -7.73695 -7.40048 -7.16469 -6.01713 -4.02846 1.46414 1.96966 2.52479 3.08115 3.23621 3.33132 3.37788 3.40349 4.26019 4.43173 4.91670 4.97957 5.01281 5.15615 5.28230 5.34288 5.35146 5.39688 5.41379 5.49682 5.63656 5.71038 5.77734 5.83635 5.91809 5.99557 6.03251 6.18658 6.31955 6.41449 6.44148 6.46895 6.76164 6.89613 6.91027 6.92679 7.16973 7.24708 7.31833 7.33145 7.62809 7.71424 7.77423 8.07798 8.14617 8.49563 9.03034 9.60613 11.09022 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.005927 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.675813 B = 4722.777123 C = 6275.665982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.122 4.122 3 C 0.081 3.919 4 N -0.528 5.528 5 C 0.189 3.811 6 C -0.509 4.509 7 H 0.061 0.939 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.110 3.890 15 C 0.114 3.886 16 C -0.196 4.196 17 C -0.101 4.101 18 C -0.069 4.069 19 C -0.156 4.156 20 C -0.110 4.110 21 C -0.130 4.130 22 C 0.097 3.903 23 N -0.474 5.474 24 C 0.086 3.914 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.028 0.972 29 H 0.098 0.902 30 H -0.009 1.009 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 -8.446 9.409 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.141 4.141 3 C -0.046 4.046 4 N -0.252 5.252 5 C 0.065 3.935 6 C -0.548 4.548 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.019 4.019 15 C 0.006 3.994 16 C -0.222 4.222 17 C -0.106 4.106 18 C -0.088 4.088 19 C -0.176 4.176 20 C -0.129 4.129 21 C -0.151 4.151 22 C -0.010 4.010 23 N -0.157 5.157 24 C -0.056 4.056 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.125 0.875 28 H 0.046 0.954 29 H 0.116 0.884 30 H 0.009 0.991 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.162 0.838 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.645 -8.991 9.258 15.000 hybrid contribution 0.358 0.498 -0.941 1.123 sum -7.287 -8.493 8.317 13.943 Atomic orbital electron populations 1.23728 0.95979 1.01246 1.04782 1.23177 0.95270 0.99584 0.96056 1.21184 0.94142 0.92516 0.96807 1.62086 1.12967 1.51644 0.98513 1.19850 0.88680 0.86585 0.98396 1.21068 1.13344 1.06915 1.13477 0.92099 1.24949 0.97435 0.95016 0.96954 1.69938 1.31124 1.12179 1.40163 0.86608 0.80282 0.78058 0.82734 1.20317 1.21322 1.20270 1.20647 0.93634 0.99526 0.88068 1.20188 1.00196 0.82774 0.96209 1.21462 1.02595 0.99035 0.99061 1.19208 1.00573 0.92482 0.98372 1.20259 0.95497 0.99241 0.93802 1.20505 1.02735 0.92965 1.01347 1.20659 0.98138 0.96253 0.97871 1.19913 1.00993 0.96964 0.97181 1.18211 0.95394 0.95534 0.91858 1.43616 1.38175 1.06617 1.27249 1.21806 0.98585 0.85841 0.99361 0.89104 0.89061 0.87452 0.95431 0.88356 0.99147 0.93780 0.92868 0.93023 0.91079 0.83812 0.86359 0.86625 0.86434 0.86954 0.91165 0.91244 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.75 14.31 29.02 0.42 -2.33 16 2 C -0.12 -1.81 8.82 -36.02 -0.32 -2.12 16 3 C 0.08 1.48 5.26 -4.98 -0.03 1.45 16 4 N -0.53 -10.79 4.38 -238.95 -1.05 -11.83 16 5 C 0.19 4.81 4.57 -4.97 -0.02 4.79 16 6 C -0.51 -14.10 8.27 -34.44 -0.28 -14.39 16 7 H 0.06 1.67 7.27 -52.49 -0.38 1.28 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.68 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.11 1.94 4.87 -4.97 -0.02 1.91 16 15 C 0.11 2.09 5.82 -81.77 -0.48 1.61 16 16 C -0.20 -3.78 9.75 -37.67 -0.37 -4.14 16 17 C -0.10 -1.86 6.37 -105.14 -0.67 -2.53 16 18 C -0.07 -1.11 10.05 -39.64 -0.40 -1.51 16 19 C -0.16 -2.18 9.97 -39.94 -0.40 -2.58 16 20 C -0.11 -1.48 10.01 -39.54 -0.40 -1.87 16 21 C -0.13 -1.90 10.00 -39.43 -0.39 -2.30 16 22 C 0.10 1.67 6.81 -83.99 -0.57 1.10 16 23 N -0.47 -7.98 3.18 -117.19 -0.37 -8.35 16 24 C 0.09 1.11 10.85 59.85 0.65 1.76 16 25 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 26 H 0.09 1.11 7.86 -52.49 -0.41 0.70 16 27 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.03 0.49 7.70 -51.93 -0.40 0.09 16 29 H 0.10 2.01 6.58 -51.93 -0.34 1.67 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.04 1.22 6.34 -51.93 -0.33 0.89 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 34 H 0.07 1.09 6.13 -51.93 -0.32 0.77 16 35 H 0.14 2.73 8.06 -52.49 -0.42 2.30 16 36 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.96 6.86 -51.93 -0.36 0.61 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -30.87 348.79 -10.15 -41.02 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.32 Total: 2.59 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -3.38 Total: -19.60 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.68 Total: -45.94 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.87 -10.15 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.637 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds