Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50698 * 120.00348 * 2 1 4 4 N 1.46900 * 109.47395 * 124.62588 * 3 2 1 5 5 C 1.46903 * 111.00170 * 163.07403 * 4 3 2 6 6 C 1.50703 * 109.46587 * 293.95175 * 5 4 3 7 7 H 1.07993 * 120.00526 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99604 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00253 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99942 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47184 * 60.00023 * 10 8 6 12 12 H 1.48496 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47111 * 300.00261 * 10 8 6 14 14 C 1.46899 * 110.99811 * 287.02237 * 4 3 2 15 15 C 1.50704 * 109.47073 * 163.93701 * 14 4 3 16 16 C 1.34232 * 125.03380 * 95.14910 * 15 14 4 17 17 C 1.46492 * 106.99606 * 179.86092 * 16 15 14 18 18 C 1.39632 * 134.03275 * 180.11729 * 17 16 15 19 19 C 1.36624 * 119.76710 * 180.35917 * 18 17 16 20 20 C 1.38836 * 120.52634 * 359.94680 * 19 18 17 21 21 C 1.37756 * 120.66552 * 0.03190 * 20 19 18 22 22 C 1.39121 * 119.77699 * 359.97438 * 21 20 19 23 23 N 1.36832 * 125.03460 * 275.45546 * 15 14 4 24 24 C 1.46502 * 125.06075 * 359.97438 * 23 15 14 25 25 H 1.07994 * 120.00214 * 185.10759 * 1 2 3 26 26 H 1.08000 * 120.00129 * 5.09397 * 1 2 3 27 27 H 1.08001 * 120.00134 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47196 * 4.62383 * 3 2 1 29 29 H 1.09002 * 109.47555 * 244.62553 * 3 2 1 30 30 H 1.08996 * 109.47126 * 53.94964 * 5 4 3 31 31 H 1.09002 * 109.47393 * 173.95383 * 5 4 3 32 32 H 0.97000 * 120.00197 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47745 * 283.93467 * 14 4 3 34 34 H 1.09003 * 109.47269 * 43.93942 * 14 4 3 35 35 H 1.07995 * 126.50693 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.11706 * 0.32543 * 18 17 16 37 37 H 1.07994 * 119.73955 * 179.97438 * 19 18 17 38 38 H 1.07994 * 119.66554 * 180.02562 * 20 19 18 39 39 H 1.07995 * 120.10744 * 180.02562 * 21 20 19 40 40 H 1.09006 * 109.46771 * 94.42843 * 24 23 15 41 41 H 1.09005 * 109.47135 * 214.42265 * 24 23 15 42 42 H 1.08999 * 109.47580 * 334.43038 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9899 1.3356 1.1397 5 6 4.0098 2.3778 0.9613 6 6 4.8915 2.0227 -0.2081 7 1 4.7121 1.1140 -0.7634 8 6 5.9269 2.8584 -0.5695 9 7 6.1452 3.9652 0.1064 10 14 7.0195 2.4187 -2.0195 11 1 6.1934 2.3183 -3.2493 12 1 8.0505 3.4720 -2.1997 13 1 7.6836 1.1157 -1.7616 14 6 2.2639 1.5204 2.4033 15 6 3.1634 1.1582 3.5570 16 6 3.9026 2.0299 4.2609 17 6 4.6162 1.2594 5.2823 18 6 5.5160 1.5923 6.2968 19 6 6.0234 0.6121 7.1020 20 6 5.6506 -0.7129 6.9204 21 6 4.7641 -1.0634 5.9260 22 6 4.2351 -0.0816 5.0944 23 7 3.3522 -0.1087 4.0382 24 6 2.7096 -1.3143 3.5091 25 1 -0.5400 -0.9315 0.0833 26 1 -0.5400 0.9316 -0.0830 27 1 1.8499 -0.9353 -0.0004 28 1 1.3581 2.1319 0.0828 29 1 2.6266 1.3995 -0.9285 30 1 3.5226 3.3342 0.7717 31 1 4.6159 2.4514 1.8643 32 1 6.8738 4.5530 -0.1476 33 1 1.9553 2.5616 2.4963 34 1 1.3833 0.8781 2.4137 35 1 3.9591 3.0971 4.1052 36 1 5.8102 2.6210 6.4441 37 1 6.7196 0.8700 7.8863 38 1 6.0600 -1.4764 7.5652 39 1 4.4801 -2.0968 5.7931 40 1 3.3690 -1.7880 2.7818 41 1 2.5113 -2.0086 4.3258 42 1 1.7707 -1.0436 3.0262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602671424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = 71.750909 kcal Electronic energy + Delta-G solvation = -22175.088164 eV Core-core repulsion = 19120.529748 eV Total energy + Delta-G solvation = -3054.558416 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.24797 -38.98613 -37.68876 -35.02920 -34.19000 -33.53514 -31.34134 -30.79714 -29.04869 -27.56673 -26.77199 -25.65242 -23.16839 -22.56150 -21.94999 -20.56585 -20.53483 -18.56128 -17.85949 -17.36132 -16.78049 -16.64535 -16.23254 -15.94644 -15.52564 -15.11744 -14.85857 -14.73018 -14.60663 -14.13147 -13.95514 -13.71241 -13.64579 -13.48838 -13.19137 -12.84526 -12.68256 -12.63626 -12.46125 -12.28899 -12.10200 -11.98367 -11.71087 -11.57300 -11.33436 -10.63319 -10.48425 -10.18483 -9.13793 -8.94434 -8.46136 -8.19593 -6.28868 0.24772 0.78459 1.37786 1.40513 1.41517 1.48924 1.74295 2.00963 2.39229 3.05608 3.13188 3.41350 3.76115 3.81970 4.00965 4.15804 4.20366 4.21447 4.28097 4.33628 4.43001 4.55897 4.58923 4.66995 4.72017 4.75656 4.80121 4.90081 5.01968 5.08001 5.12706 5.23311 5.25735 5.30024 5.61167 5.61582 5.75354 5.77281 5.88120 5.91572 5.99704 6.08478 6.28581 6.38445 6.50575 6.58978 6.86230 7.39590 8.91211 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.005927 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.675813 B = 4722.777123 C = 6275.665982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.084 3.916 4 N -0.529 5.529 5 C 0.208 3.792 6 C -0.522 4.522 7 H 0.061 0.939 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.117 3.883 15 C 0.104 3.896 16 C -0.231 4.231 17 C -0.137 4.137 18 C -0.094 4.094 19 C -0.151 4.151 20 C -0.104 4.104 21 C -0.133 4.133 22 C 0.078 3.922 23 N -0.475 5.475 24 C 0.081 3.919 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.030 0.970 29 H 0.068 0.932 30 H -0.040 1.040 31 H 0.013 0.987 32 H 0.263 0.737 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.142 0.858 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.470 -11.568 9.840 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C -0.043 4.043 4 N -0.253 5.253 5 C 0.082 3.918 6 C -0.560 4.560 7 H 0.079 0.921 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.789 3.211 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.198 1.198 14 C -0.011 4.011 15 C -0.005 4.005 16 C -0.257 4.257 17 C -0.142 4.142 18 C -0.113 4.113 19 C -0.170 4.170 20 C -0.123 4.123 21 C -0.154 4.154 22 C -0.028 4.028 23 N -0.158 5.158 24 C -0.060 4.060 25 H 0.139 0.861 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.048 0.952 29 H 0.087 0.913 30 H -0.022 1.022 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.159 0.841 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.308 -12.146 9.688 17.618 hybrid contribution 0.499 1.457 -0.977 1.824 sum -7.809 -10.689 8.711 15.846 Atomic orbital electron populations 1.23978 0.94929 1.02864 1.00275 1.22841 0.95895 0.97522 1.00111 1.21137 0.93587 0.95110 0.94511 1.61981 1.13555 1.49213 1.00517 1.19404 0.89409 0.86676 0.96280 1.21398 1.13759 1.06837 1.14003 0.92067 1.25863 0.98968 0.94846 0.99838 1.70084 1.31861 1.13317 1.41946 0.85519 0.78339 0.77785 0.79477 1.18917 1.20882 1.19786 1.20630 0.94175 0.99795 0.86512 1.20206 1.00291 0.83792 0.96198 1.21522 1.04452 0.98716 1.00961 1.19502 1.01988 0.93377 0.99300 1.20513 0.96044 1.00386 0.94316 1.20926 1.02148 0.92900 1.00983 1.21180 0.96832 0.96831 0.97417 1.20337 1.00674 0.97771 0.96606 1.18616 0.95904 0.95729 0.92577 1.43810 1.38107 1.06850 1.27016 1.22064 0.98563 0.84886 1.00467 0.86076 0.88585 0.87078 0.95224 0.91338 1.02235 0.96867 0.92824 0.93829 0.88040 0.85742 0.86091 0.83584 0.82501 0.84054 0.91675 0.88184 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 14.31 67.79 0.97 -2.98 16 2 C -0.15 -4.04 8.82 25.65 0.23 -3.82 16 3 C 0.08 3.11 5.26 85.56 0.45 3.55 16 4 N -0.53 -22.41 4.38 -909.91 -3.99 -26.39 16 5 C 0.21 11.26 4.57 85.56 0.39 11.66 16 6 C -0.52 -30.00 8.27 25.60 0.21 -29.79 16 7 H 0.06 3.44 7.27 -2.91 -0.02 3.42 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 10 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 11 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 14 C 0.12 4.25 4.87 85.56 0.42 4.67 16 15 C 0.10 3.98 5.82 40.87 0.24 4.22 16 16 C -0.23 -9.65 9.75 23.51 0.23 -9.42 16 17 C -0.14 -5.25 6.37 -20.20 -0.13 -5.38 16 18 C -0.09 -3.08 10.05 22.23 0.22 -2.86 16 19 C -0.15 -3.92 9.97 22.04 0.22 -3.70 16 20 C -0.10 -2.45 10.01 22.30 0.22 -2.22 16 21 C -0.13 -3.58 10.00 22.37 0.22 -3.35 16 22 C 0.08 2.68 6.81 39.03 0.27 2.95 16 23 N -0.48 -15.91 3.18 -524.67 -1.67 -17.58 16 24 C 0.08 1.92 10.85 127.77 1.39 3.31 16 25 H 0.12 1.98 8.06 -2.91 -0.02 1.95 16 26 H 0.10 2.02 7.86 -2.91 -0.02 2.00 16 27 H 0.11 3.04 8.06 -2.91 -0.02 3.01 16 28 H 0.03 1.06 7.70 -2.38 -0.02 1.04 16 29 H 0.07 2.91 6.58 -2.39 -0.02 2.90 16 30 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 31 H 0.01 0.79 6.34 -2.39 -0.02 0.78 16 32 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 34 H 0.10 3.01 6.13 -2.39 -0.01 2.99 16 35 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 36 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.09 1.96 6.86 -2.39 -0.02 1.95 16 Total: -1.00 -70.88 348.79 3.65 -67.23 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.98 Total: 19.12 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 6.01 Total: -32.52 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -5.37 Total: -101.13 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.88 3.65 -67.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.979 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds