Wall clock time and date at job start Tue Mar 31 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47644 * 2 1 4 4 C 1.52999 * 109.47626 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.48262 * 304.98618 * 4 3 2 6 6 C 1.53091 * 109.49596 * 184.94445 * 4 3 2 7 7 C 1.53171 * 109.16587 * 182.40255 * 6 4 3 8 8 H 1.09001 * 109.61978 * 297.07902 * 7 6 4 9 9 C 1.50696 * 109.54592 * 176.84880 * 7 6 4 10 10 O 1.20827 * 119.99907 * 0.45011 * 9 7 6 11 11 O 1.34226 * 120.00369 * 180.44510 * 9 7 6 12 12 C 1.45198 * 117.00235 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47301 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47355 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47168 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.53176 * 109.03501 * 56.98530 * 7 6 4 24 24 C 1.53094 * 109.16395 * 303.01757 * 23 7 6 25 25 O 1.42902 * 109.41491 * 57.61067 * 24 23 7 26 26 H 1.09000 * 109.46941 * 300.00499 * 1 2 3 27 27 H 1.09005 * 109.46689 * 59.99950 * 1 2 3 28 28 H 1.08997 * 109.47438 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46941 * 239.99501 * 2 1 3 30 30 H 1.09005 * 109.46689 * 120.00050 * 2 1 3 31 31 H 1.09000 * 109.47359 * 59.99757 * 3 2 1 32 32 H 1.08997 * 109.47264 * 300.00031 * 3 2 1 33 33 H 1.09006 * 109.51657 * 62.50013 * 6 4 3 34 34 H 1.08996 * 109.52434 * 302.31500 * 6 4 3 35 35 H 1.09002 * 109.46903 * 60.00364 * 12 11 9 36 36 H 1.08992 * 109.47569 * 300.00326 * 12 11 9 37 37 H 1.09002 * 109.46807 * 60.00351 * 13 12 11 38 38 H 1.08998 * 109.47285 * 299.99953 * 13 12 11 39 39 H 1.09007 * 109.46922 * 59.99890 * 14 13 12 40 40 H 1.09003 * 109.46836 * 300.00646 * 14 13 12 41 41 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.52681 * 62.92007 * 23 7 6 43 43 H 1.08999 * 109.52446 * 183.11531 * 23 7 6 44 44 H 1.09003 * 109.48070 * 177.58877 * 24 23 7 45 45 H 1.09004 * 109.47875 * 297.61478 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9333 0.8533 0.8428 6 6 4.0810 2.8801 0.1250 7 6 5.6115 2.8770 0.0645 8 1 6.0101 2.3199 0.9123 9 6 6.1207 4.2946 0.1084 10 8 5.3412 5.2143 0.1889 11 8 7.4402 4.5357 0.0582 12 6 7.8587 5.9252 0.1056 13 6 9.3854 6.0007 0.0384 14 6 9.8264 7.4648 0.0889 15 6 11.3301 7.5391 0.0221 16 1 11.9129 6.6327 -0.0498 17 6 11.9618 8.7643 0.0526 18 7 11.2521 9.8681 0.1396 19 14 13.8257 8.8563 -0.0296 20 1 14.2538 10.2775 0.0194 21 1 14.4088 8.1232 1.1227 22 1 14.2963 8.2415 -1.2968 23 6 6.0585 2.2123 -1.2411 24 6 5.4713 0.8002 -1.3128 25 8 4.0471 0.8727 -1.2202 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9562 -0.8899 33 1 3.7549 3.3015 1.0760 34 1 3.6852 3.4796 -0.6948 35 1 7.5136 6.3771 1.0356 36 1 7.4304 6.4628 -0.7403 37 1 9.7308 5.5487 -0.8914 38 1 9.8133 5.4633 0.8846 39 1 9.4809 7.9165 1.0190 40 1 9.3984 8.0026 -0.7570 41 1 11.6966 10.7300 0.1615 42 1 5.7026 2.7981 -2.0886 43 1 7.1467 2.1559 -1.2672 44 1 5.7508 0.3379 -2.2595 45 1 5.8595 0.2028 -0.4879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780167310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:29 Heat of formation + Delta-G solvation = -179.435771 kcal Electronic energy + Delta-G solvation = -22211.481016 eV Core-core repulsion = 18806.428658 eV Total energy + Delta-G solvation = -3405.052358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.182 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73334 -39.36381 -36.53999 -35.37542 -34.13282 -33.88089 -31.72998 -31.51617 -27.87468 -27.17299 -25.49548 -23.34165 -23.09566 -21.67054 -21.13771 -20.41757 -19.91320 -17.51624 -16.82615 -16.73988 -16.45325 -16.13289 -15.49090 -15.13663 -14.84331 -14.49999 -14.44863 -14.25403 -13.72782 -13.26976 -13.08719 -13.00645 -12.51193 -12.21110 -12.10491 -11.94523 -11.87905 -11.68929 -11.55940 -11.30436 -10.98187 -10.96362 -10.93691 -10.69445 -10.65135 -10.63062 -10.39554 -10.32909 -9.80703 -9.74018 -9.48331 -9.19041 -8.39930 -6.04771 -4.08032 2.29595 2.82072 3.31310 3.35695 3.38172 3.47079 4.21120 4.39676 4.43033 4.46256 4.58695 4.70967 4.74243 4.88139 4.91039 5.06461 5.10621 5.23585 5.30975 5.33789 5.36375 5.37097 5.48379 5.54052 5.55505 5.61022 5.62777 5.68378 5.80252 5.82108 5.90902 5.99233 6.00070 6.05306 6.48750 6.51619 6.82682 6.94202 6.96324 7.58202 7.69305 7.90477 7.93446 8.34284 8.97919 9.56173 11.06596 Molecular weight = 284.18amu Principal moments of inertia in cm(-1) A = 0.049897 B = 0.002309 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.024009 B =12126.078141 C =12539.186178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.092 3.908 5 H 0.060 0.940 6 C -0.135 4.135 7 C -0.082 4.082 8 H 0.108 0.892 9 C 0.461 3.539 10 O -0.510 6.510 11 O -0.357 6.357 12 C 0.067 3.933 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.149 4.149 24 C 0.065 3.935 25 O -0.377 6.377 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.792 -21.077 -0.388 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.149 4.149 4 C 0.034 3.966 5 H 0.078 0.922 6 C -0.173 4.173 7 C -0.102 4.102 8 H 0.126 0.874 9 C 0.304 3.696 10 O -0.399 6.399 11 O -0.273 6.273 12 C -0.005 4.005 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.187 4.187 24 C -0.012 4.012 25 O -0.296 6.296 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.100 -20.624 -0.501 27.445 hybrid contribution 1.274 0.588 0.235 1.422 sum -16.826 -20.036 -0.266 26.165 Atomic orbital electron populations 1.21783 0.95948 1.01542 1.01781 1.21480 0.95597 0.96455 1.02433 1.21638 0.92328 0.97842 1.03129 1.22158 0.94919 0.92251 0.87236 0.92162 1.22152 0.92576 0.97880 1.04669 1.21083 0.96924 0.90862 1.01281 0.87449 1.23483 0.81403 0.92063 0.72682 1.90655 1.57379 1.46619 1.45198 1.86488 1.24580 1.33447 1.82799 1.23508 0.98028 0.76912 1.02089 1.21762 0.89002 1.01941 1.01908 1.19050 0.96406 0.88193 0.97664 1.21131 0.91541 0.92484 1.50929 0.92478 1.25038 0.98506 0.95767 0.95179 1.69958 1.35510 0.97635 1.50220 0.86594 0.85414 0.76949 0.78667 1.21245 1.20186 1.20183 1.22216 1.02722 0.97416 0.96301 1.22573 0.80930 0.95089 1.02620 1.87943 1.20866 1.82209 1.38586 0.92854 0.92705 0.92836 0.91175 0.92275 0.90449 0.90867 0.89933 0.89852 0.91564 0.91551 0.92153 0.92167 0.96250 0.96247 0.92821 0.90335 0.89042 0.88228 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.83 5.83 -26.74 -0.16 -0.99 16 3 C -0.11 -0.83 4.92 -26.74 -0.13 -0.96 16 4 C 0.09 0.77 2.64 -26.68 -0.07 0.70 16 5 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 6 C -0.14 -1.34 4.01 -26.60 -0.11 -1.45 16 7 C -0.08 -0.88 2.72 -91.59 -0.25 -1.13 16 8 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 9 C 0.46 6.97 7.26 36.00 0.26 7.23 16 10 O -0.51 -9.14 15.72 -18.75 -0.29 -9.44 16 11 O -0.36 -5.92 10.15 -39.25 -0.40 -6.32 16 12 C 0.07 1.26 5.47 37.16 0.20 1.46 16 13 C -0.11 -2.26 5.53 -26.73 -0.15 -2.41 16 14 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 15 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 19 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C -0.15 -1.40 5.35 -26.59 -0.14 -1.54 16 24 C 0.06 0.51 6.84 37.21 0.25 0.76 16 25 O -0.38 -3.58 9.94 -35.23 -0.35 -3.93 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.95 8.03 -51.93 -0.42 0.54 16 35 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 36 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -31.55 366.58 -8.67 -40.21 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -8.40 Total: -4.53 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -0.47 Total: -11.93 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.04 Total: -19.69 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.55 -8.67 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780167310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.221 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds