Wall clock time and date at job start Tue Mar 31 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09001 * 109.48126 * 59.99079 * 4 2 1 6 6 C 1.53091 * 109.48173 * 180.02562 * 4 2 1 7 7 C 1.53173 * 109.15990 * 177.57631 * 6 4 2 8 8 H 1.09007 * 109.53523 * 62.90531 * 7 6 4 9 9 C 1.53003 * 109.61644 * 183.11602 * 7 6 4 10 10 C 1.50701 * 109.47339 * 184.61297 * 9 7 6 11 11 O 1.20820 * 119.99751 * 0.02562 * 10 9 7 12 12 O 1.34231 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.45193 * 116.99883 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46922 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47085 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00587 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99892 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00144 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47434 * 89.99348 * 19 17 15 21 21 H 1.48497 * 109.47424 * 209.99921 * 19 17 15 22 22 H 1.48502 * 109.46768 * 329.99538 * 19 17 15 23 23 C 1.53174 * 109.05198 * 303.03752 * 7 6 4 24 24 C 1.53091 * 109.16299 * 56.97245 * 23 7 6 25 25 O 1.42902 * 109.47683 * 299.97404 * 4 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.51757 * 297.49467 * 6 4 2 34 34 H 1.09000 * 109.52282 * 57.68584 * 6 4 2 35 35 H 1.08997 * 109.47154 * 304.61938 * 9 7 6 36 36 H 1.08999 * 109.46405 * 64.61532 * 9 7 6 37 37 H 1.09008 * 109.47334 * 299.99483 * 13 12 10 38 38 H 1.08998 * 109.47788 * 60.00015 * 13 12 10 39 39 H 1.09004 * 109.46869 * 299.99459 * 14 13 12 40 40 H 1.08999 * 109.47377 * 59.99790 * 14 13 12 41 41 H 0.97007 * 119.99893 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.52070 * 297.07318 * 23 7 6 43 43 H 1.08999 * 109.57796 * 176.91549 * 23 7 6 44 44 H 1.09004 * 109.48259 * 182.41179 * 24 23 7 45 45 H 1.09002 * 109.48957 * 62.38195 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6767 -0.2075 -2.1394 6 6 3.5710 -0.7219 -1.2492 7 6 4.0734 -1.4976 -2.4706 8 1 3.7513 -0.9922 -3.3812 9 6 5.6013 -1.5713 -2.4394 10 6 6.0981 -2.2353 -3.6978 11 8 5.3109 -2.6105 -4.5340 12 8 7.4151 -2.4097 -3.8897 13 6 7.8214 -3.0559 -5.1248 14 6 9.3469 -3.1668 -5.1644 15 6 9.7687 -3.8369 -6.4466 16 1 9.0233 -4.1526 -7.1616 17 6 11.1062 -4.0470 -6.7071 18 7 11.4742 -4.6323 -7.8259 19 14 12.3955 -3.5018 -5.4703 20 1 12.6631 -4.6064 -4.5145 21 1 13.6492 -3.1504 -6.1844 22 1 11.8991 -2.3149 -4.7286 23 6 3.4913 -2.9140 -2.4376 24 6 1.9634 -2.8285 -2.3918 25 8 1.5643 -2.0687 -1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 3.9356 0.3043 -1.2939 34 1 3.9349 -1.1995 -0.3395 35 1 6.0124 -0.5640 -2.3734 36 1 5.9194 -2.1511 -1.5729 37 1 7.3836 -4.0530 -5.1743 38 1 7.4775 -2.4655 -5.9740 39 1 9.7851 -2.1699 -5.1148 40 1 9.6905 -3.7575 -4.3153 41 1 12.4153 -4.7805 -8.0089 42 1 3.8534 -3.4361 -1.5519 43 1 3.7992 -3.4565 -3.3314 44 1 1.5449 -3.8327 -2.3249 45 1 1.5992 -2.3424 -3.2969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781796538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:55 Heat of formation + Delta-G solvation = -171.578794 kcal Electronic energy + Delta-G solvation = -22626.788747 eV Core-core repulsion = 19222.077092 eV Total energy + Delta-G solvation = -3404.711654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.182 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51167 -39.57769 -36.54426 -35.62986 -34.72910 -33.33040 -30.89956 -30.32893 -29.30531 -27.39459 -25.40265 -24.15440 -23.58065 -21.11307 -20.60886 -20.48992 -19.83028 -17.52640 -16.71829 -16.62464 -16.31026 -16.20604 -15.89015 -14.91065 -14.62154 -14.53258 -14.23222 -13.90193 -13.76091 -13.38532 -13.07828 -12.83937 -12.69180 -12.50799 -12.34769 -12.15411 -11.81131 -11.55684 -11.42762 -11.32838 -11.29350 -11.16640 -11.02667 -10.72620 -10.68017 -10.47769 -10.37521 -9.97677 -9.91754 -9.72170 -9.55289 -9.36459 -8.64355 -6.14877 -4.16170 2.49078 3.08379 3.26184 3.33607 3.37844 3.52292 4.30960 4.36695 4.43564 4.55501 4.59666 4.79084 4.84942 4.96254 5.02308 5.11905 5.17850 5.18597 5.25391 5.30953 5.35459 5.38415 5.46230 5.51906 5.55880 5.60531 5.68571 5.73583 5.78703 5.86074 5.94062 5.95028 5.96675 6.05145 6.09672 6.17699 6.43110 6.80363 7.07398 7.17862 7.20177 7.60445 8.12627 8.37636 8.86636 9.44625 10.97643 Molecular weight = 284.18amu Principal moments of inertia in cm(-1) A = 0.040436 B = 0.002633 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.293733 B =10633.088382 C =11081.424615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.149 4.149 4 C 0.097 3.903 5 H 0.057 0.943 6 C -0.146 4.146 7 C -0.077 4.077 8 H 0.081 0.919 9 C -0.110 4.110 10 C 0.455 3.545 11 O -0.514 6.514 12 O -0.363 6.363 13 C 0.082 3.918 14 C -0.010 4.010 15 C -0.528 4.528 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.882 3.118 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.263 1.263 23 C -0.159 4.159 24 C 0.065 3.935 25 O -0.380 6.380 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.266 0.734 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.784 10.514 17.410 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.207 4.207 4 C 0.039 3.961 5 H 0.075 0.925 6 C -0.184 4.184 7 C -0.096 4.096 8 H 0.099 0.901 9 C -0.148 4.148 10 C 0.298 3.702 11 O -0.403 6.403 12 O -0.280 6.280 13 C 0.010 3.990 14 C -0.047 4.047 15 C -0.566 4.566 16 H 0.093 0.907 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.709 3.291 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.188 1.188 23 C -0.197 4.197 24 C -0.012 4.012 25 O -0.299 6.299 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.931 10.248 17.165 28.229 hybrid contribution 1.030 0.169 0.069 1.046 sum -18.900 10.417 17.234 27.618 Atomic orbital electron populations 1.21766 0.94658 1.02411 1.01288 1.21097 0.96513 0.95621 0.97440 1.21887 1.01447 0.95182 1.02136 1.22102 0.92538 0.83448 0.98023 0.92529 1.22335 0.96340 1.01079 0.98616 1.21024 0.92583 0.97009 0.98972 0.90087 1.21434 0.96179 1.02553 0.94650 1.23553 0.81466 0.76767 0.88377 1.90599 1.56568 1.47640 1.45494 1.86489 1.24764 1.72242 1.44464 1.23365 0.98365 0.96015 0.81258 1.19625 0.88632 0.98041 0.98403 1.20842 0.93520 1.39481 1.02731 0.90675 1.24947 0.98459 0.94325 0.95341 1.69900 1.16955 1.42374 1.24235 0.86740 0.80963 0.79879 0.81550 1.20054 1.21155 1.18781 1.22406 0.96191 0.97016 1.04063 1.22544 0.94178 0.96116 0.88330 1.87888 1.74690 1.23200 1.44157 0.91815 0.92889 0.92960 0.90473 0.92499 0.92177 0.92057 0.90420 0.90719 0.87824 0.87864 0.91770 0.91745 0.95425 0.95842 0.92423 0.91380 0.88850 0.88900 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.05 37.16 0.34 -0.70 16 2 C -0.09 -0.65 2.72 -90.62 -0.25 -0.89 16 3 C -0.15 -0.88 8.84 37.16 0.33 -0.55 16 4 C 0.10 0.84 2.22 -26.68 -0.06 0.78 16 5 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 6 C -0.15 -1.20 4.28 -26.59 -0.11 -1.31 16 7 C -0.08 -0.79 1.92 -90.44 -0.17 -0.96 16 8 H 0.08 0.91 7.96 -51.92 -0.41 0.50 16 9 C -0.11 -1.20 5.30 -27.88 -0.15 -1.35 16 10 C 0.46 7.26 7.69 36.01 0.28 7.53 16 11 O -0.51 -9.33 13.73 -18.75 -0.26 -9.59 16 12 O -0.36 -6.77 10.22 -39.26 -0.40 -7.17 16 13 C 0.08 1.76 5.40 37.16 0.20 1.96 16 14 C -0.01 -0.23 4.42 -27.88 -0.12 -0.36 16 15 C -0.53 -15.02 9.66 -34.44 -0.33 -15.35 16 16 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 19 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 23 C -0.16 -1.74 5.12 -26.59 -0.14 -1.88 16 24 C 0.06 0.65 6.84 37.20 0.25 0.90 16 25 O -0.38 -3.99 9.73 -35.23 -0.34 -4.34 16 26 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.34 6.49 -51.93 -0.34 0.00 16 33 H 0.08 0.53 6.57 -51.93 -0.34 0.19 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.38 8.13 -51.92 -0.42 0.95 16 38 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 39 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 40 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.23 6.04 -51.93 -0.31 0.91 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -31.37 354.60 -7.66 -39.03 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -8.08 Total: -3.25 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -0.03 Total: -10.20 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.77 Total: -26.56 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.00 Total: -21.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.37 -7.66 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781796538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.544 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds