Wall clock time and date at job start Tue Mar 31 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09001 * 109.48126 * 59.99079 * 4 2 1 6 6 C 1.53091 * 109.48173 * 180.02562 * 4 2 1 7 7 C 1.53173 * 109.15990 * 177.57631 * 6 4 2 8 8 H 1.09007 * 109.53523 * 62.90531 * 7 6 4 9 9 C 1.53003 * 109.61644 * 183.11602 * 7 6 4 10 10 C 1.50701 * 109.47339 * 184.61297 * 9 7 6 11 11 O 1.20820 * 119.99751 * 0.02562 * 10 9 7 12 12 O 1.34231 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.45193 * 116.99883 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46922 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47085 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00587 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99892 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00144 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47434 * 89.99348 * 19 17 15 21 21 H 1.48497 * 109.47424 * 209.99921 * 19 17 15 22 22 H 1.48502 * 109.46768 * 329.99538 * 19 17 15 23 23 C 1.53174 * 109.05198 * 303.03752 * 7 6 4 24 24 C 1.53091 * 109.16299 * 56.97245 * 23 7 6 25 25 O 1.42902 * 109.47683 * 299.97404 * 4 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.51757 * 297.49467 * 6 4 2 34 34 H 1.09000 * 109.52282 * 57.68584 * 6 4 2 35 35 H 1.08997 * 109.47154 * 304.61938 * 9 7 6 36 36 H 1.08999 * 109.46405 * 64.61532 * 9 7 6 37 37 H 1.09008 * 109.47334 * 299.99483 * 13 12 10 38 38 H 1.08998 * 109.47788 * 60.00015 * 13 12 10 39 39 H 1.09004 * 109.46869 * 299.99459 * 14 13 12 40 40 H 1.08999 * 109.47377 * 59.99790 * 14 13 12 41 41 H 0.97007 * 119.99893 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.52070 * 297.07318 * 23 7 6 43 43 H 1.08999 * 109.57796 * 176.91549 * 23 7 6 44 44 H 1.09004 * 109.48259 * 182.41179 * 24 23 7 45 45 H 1.09002 * 109.48957 * 62.38195 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6767 -0.2075 -2.1394 6 6 3.5710 -0.7219 -1.2492 7 6 4.0734 -1.4976 -2.4706 8 1 3.7513 -0.9922 -3.3812 9 6 5.6013 -1.5713 -2.4394 10 6 6.0981 -2.2353 -3.6978 11 8 5.3109 -2.6105 -4.5340 12 8 7.4151 -2.4097 -3.8897 13 6 7.8214 -3.0559 -5.1248 14 6 9.3469 -3.1668 -5.1644 15 6 9.7687 -3.8369 -6.4466 16 1 9.0233 -4.1526 -7.1616 17 6 11.1062 -4.0470 -6.7071 18 7 11.4742 -4.6323 -7.8259 19 14 12.3955 -3.5018 -5.4703 20 1 12.6631 -4.6064 -4.5145 21 1 13.6492 -3.1504 -6.1844 22 1 11.8991 -2.3149 -4.7286 23 6 3.4913 -2.9140 -2.4376 24 6 1.9634 -2.8285 -2.3918 25 8 1.5643 -2.0687 -1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 3.9356 0.3043 -1.2939 34 1 3.9349 -1.1995 -0.3395 35 1 6.0124 -0.5640 -2.3734 36 1 5.9194 -2.1511 -1.5729 37 1 7.3836 -4.0530 -5.1743 38 1 7.4775 -2.4655 -5.9740 39 1 9.7851 -2.1699 -5.1148 40 1 9.6905 -3.7575 -4.3153 41 1 12.4153 -4.7805 -8.0089 42 1 3.8534 -3.4361 -1.5519 43 1 3.7992 -3.4565 -3.3314 44 1 1.5449 -3.8327 -2.3249 45 1 1.5992 -2.3424 -3.2969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781796538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:54 Heat of formation + Delta-G solvation = -189.128976 kcal Electronic energy + Delta-G solvation = -22627.549780 eV Core-core repulsion = 19222.077092 eV Total energy + Delta-G solvation = -3405.472687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.182 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68017 -40.52737 -37.90983 -36.30542 -35.63911 -35.40449 -32.84605 -31.07267 -30.27505 -27.93584 -27.17525 -25.03317 -24.45832 -22.74307 -22.03172 -21.16693 -20.68381 -19.24506 -18.34525 -17.71396 -17.33144 -17.29174 -16.97682 -16.31458 -15.89734 -15.40240 -15.33436 -14.95186 -14.85437 -14.58833 -14.24375 -14.00967 -13.74552 -13.39422 -13.33014 -13.10018 -12.99900 -12.84292 -12.53705 -12.43594 -12.41500 -12.12393 -12.04592 -11.84366 -11.81549 -11.70698 -11.56218 -11.49014 -11.42542 -11.20272 -10.99388 -10.82609 -10.37345 -8.35813 -6.44286 1.21957 1.37451 1.39198 1.51961 1.76367 2.33384 2.82339 2.98927 3.55630 3.57251 3.73187 3.95682 3.98108 4.15144 4.15910 4.18255 4.20894 4.33118 4.35723 4.44031 4.46187 4.59845 4.61500 4.69442 4.78589 4.81837 4.82931 4.86577 4.97204 5.05005 5.05812 5.09802 5.15008 5.19955 5.27294 5.29111 5.36984 5.48909 5.49525 5.50080 5.63741 6.13874 6.33827 6.61773 6.76893 7.20896 8.80260 Molecular weight = 284.18amu Principal moments of inertia in cm(-1) A = 0.040436 B = 0.002633 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.293733 B =10633.088382 C =11081.424615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.147 4.147 4 C 0.090 3.910 5 H 0.053 0.947 6 C -0.137 4.137 7 C -0.075 4.075 8 H 0.068 0.932 9 C -0.100 4.100 10 C 0.450 3.550 11 O -0.540 6.540 12 O -0.364 6.364 13 C 0.094 3.906 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.033 0.967 17 C 0.010 3.990 18 N -0.944 5.944 19 Si 0.956 3.044 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.243 1.243 23 C -0.158 4.158 24 C 0.066 3.934 25 O -0.392 6.392 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.034 0.966 41 H 0.271 0.729 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.383 12.397 20.406 30.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.204 4.204 4 C 0.033 3.967 5 H 0.071 0.929 6 C -0.175 4.175 7 C -0.094 4.094 8 H 0.086 0.914 9 C -0.137 4.137 10 C 0.295 3.705 11 O -0.431 6.431 12 O -0.281 6.281 13 C 0.020 3.980 14 C -0.041 4.041 15 C -0.582 4.582 16 H 0.052 0.948 17 C -0.188 4.188 18 N -0.584 5.584 19 Si 0.778 3.222 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.166 1.166 23 C -0.196 4.196 24 C -0.010 4.010 25 O -0.311 6.311 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.118 0.882 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.562 12.141 20.175 30.612 hybrid contribution 0.764 -0.448 -0.926 1.281 sum -18.798 11.693 19.249 29.336 Atomic orbital electron populations 1.21756 0.94804 1.01638 1.01861 1.21105 0.96423 0.96387 0.96521 1.21879 1.01895 0.94023 1.02604 1.22276 0.93066 0.82682 0.98676 0.92910 1.22292 0.95736 1.01898 0.97554 1.21018 0.92194 0.96590 0.99582 0.91399 1.21611 0.96264 1.03713 0.92139 1.24669 0.80096 0.76086 0.89636 1.90605 1.56804 1.48751 1.46896 1.86480 1.26704 1.72221 1.42709 1.22886 0.96795 0.95763 0.82514 1.19462 0.90477 0.97859 0.96306 1.21123 0.93168 1.39942 1.03921 0.94818 1.25990 1.01079 0.94175 0.97558 1.70049 1.17841 1.43872 1.26613 0.85575 0.77468 0.80331 0.78814 1.18784 1.20586 1.16639 1.22350 0.96873 0.97457 1.02882 1.22519 0.93661 0.96580 0.88275 1.87884 1.74993 1.24131 1.44096 0.93246 0.91763 0.92964 0.90628 0.92449 0.91349 0.91310 0.88390 0.89982 0.84965 0.85649 0.92725 0.92683 0.94615 0.94765 0.92042 0.90897 0.91508 0.88248 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.05 71.98 0.65 -1.20 16 2 C -0.09 -1.08 2.72 -10.79 -0.03 -1.11 16 3 C -0.15 -1.33 8.84 71.98 0.64 -0.69 16 4 C 0.09 1.41 2.22 30.63 0.07 1.48 16 5 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 6 C -0.14 -1.85 4.28 30.68 0.13 -1.72 16 7 C -0.08 -1.39 1.92 -10.68 -0.02 -1.41 16 8 H 0.07 1.45 7.96 -2.38 -0.02 1.43 16 9 C -0.10 -1.89 5.30 29.85 0.16 -1.73 16 10 C 0.45 13.79 7.69 71.24 0.55 14.34 16 11 O -0.54 -19.72 13.73 21.98 0.30 -19.42 16 12 O -0.36 -13.06 10.22 -51.43 -0.53 -13.58 16 13 C 0.09 4.02 5.40 71.98 0.39 4.41 16 14 C 0.00 -0.17 4.42 29.85 0.13 -0.04 16 15 C -0.54 -31.59 9.66 25.60 0.25 -31.34 16 16 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 17 C 0.01 0.58 5.47 84.65 0.46 1.04 16 18 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 19 Si 0.96 43.25 27.47 68.60 1.88 45.14 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 23 C -0.16 -3.34 5.12 30.68 0.16 -3.18 16 24 C 0.07 1.30 6.84 72.01 0.49 1.79 16 25 O -0.39 -7.81 9.73 -148.98 -1.45 -9.26 16 26 H 0.05 0.77 7.68 -2.39 -0.02 0.76 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.52 6.49 -2.39 -0.02 0.51 16 33 H 0.10 0.96 6.57 -2.39 -0.02 0.94 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 2.40 8.13 -2.38 -0.02 2.38 16 38 H 0.05 2.42 8.13 -2.39 -0.02 2.40 16 39 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 40 H 0.03 1.55 7.57 -2.39 -0.02 1.54 16 41 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.78 6.04 -2.39 -0.01 1.77 16 44 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -69.03 354.60 5.42 -63.62 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.88 Total: 11.36 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.03 Total: -19.37 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -1.67 Total: -42.27 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.14 kcal Total: -69.03 5.42 -63.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781796538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.510 kcal (2) G-P(sol) polarization free energy of solvation -69.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds