Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46799 * 2 1 4 4 C 1.42909 * 113.99889 * 184.50821 * 3 2 1 5 5 H 1.09006 * 109.46751 * 328.47603 * 4 3 2 6 6 C 1.50706 * 109.47044 * 208.47911 * 4 3 2 7 7 O 1.20822 * 119.99632 * 354.99391 * 6 4 3 8 8 O 1.34230 * 119.99423 * 174.99698 * 6 4 3 9 9 C 1.45200 * 116.99337 * 179.97438 * 8 6 4 10 10 C 1.52994 * 109.46921 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47256 * 300.00145 * 10 9 8 12 12 C 1.52999 * 109.47282 * 60.00212 * 10 9 8 13 13 C 1.53002 * 109.47195 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47475 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99533 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00299 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00145 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99974 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47299 * 89.99935 * 18 16 14 20 20 H 1.48501 * 109.46870 * 210.00631 * 18 16 14 21 21 H 1.48507 * 109.47084 * 330.00024 * 18 16 14 22 22 C 1.52992 * 109.47142 * 88.47604 * 4 3 2 23 23 C 1.53005 * 117.49705 * 185.32195 * 22 4 3 24 24 C 1.53001 * 60.03272 * 107.47761 * 23 22 4 25 25 H 1.08997 * 109.47199 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47281 * 300.00486 * 1 2 3 27 27 H 1.09001 * 109.46681 * 60.00314 * 1 2 3 28 28 H 1.08991 * 109.47246 * 239.99855 * 2 1 3 29 29 H 1.09001 * 109.46681 * 119.99685 * 2 1 3 30 30 H 1.09006 * 109.47206 * 299.99939 * 9 8 6 31 31 H 1.09001 * 109.47337 * 60.00160 * 9 8 6 32 32 H 1.08993 * 109.46893 * 59.99868 * 11 10 9 33 33 H 1.09005 * 109.47121 * 180.02562 * 11 10 9 34 34 H 1.09001 * 109.46903 * 299.99848 * 11 10 9 35 35 H 1.08999 * 109.47214 * 60.00261 * 12 10 9 36 36 H 1.09003 * 109.47167 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46779 * 300.00047 * 12 10 9 38 38 H 1.08999 * 109.47451 * 299.99831 * 13 10 9 39 39 H 1.09001 * 109.47175 * 60.00023 * 13 10 9 40 40 H 0.96995 * 120.00360 * 179.97438 * 17 16 14 41 41 H 1.08997 * 115.55273 * 39.65580 * 22 4 3 42 42 H 1.08998 * 117.49885 * 214.97822 * 23 22 4 43 43 H 1.08996 * 117.49596 * 359.97438 * 23 22 4 44 44 H 1.09003 * 117.49884 * 107.49576 * 24 23 22 45 45 H 1.08995 * 117.50117 * 252.52256 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4271 1.4615 -0.1026 5 1 3.8963 0.6035 0.3790 6 6 3.8796 2.7284 0.5767 7 8 3.0630 3.5031 1.0158 8 8 5.1897 2.9960 0.6937 9 6 5.5525 4.2346 1.3589 10 6 7.0764 4.3659 1.3964 11 6 7.6715 3.1825 2.1621 12 6 7.6228 4.3755 -0.0326 13 6 7.4587 5.6714 2.0968 14 6 8.9598 5.8004 2.1343 15 1 9.5791 5.0286 1.7015 16 6 9.5424 6.9041 2.7202 17 7 8.7883 7.8441 3.2468 18 14 11.4030 7.0643 2.7661 19 1 11.8689 7.7742 1.5479 20 1 11.8039 7.8337 3.9714 21 1 12.0152 5.7122 2.8157 22 6 3.8303 1.5018 -1.5779 23 6 5.3256 1.4969 -1.9020 24 6 4.4821 0.2482 -2.1669 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.1289 5.0778 0.8131 31 1 5.1629 4.2281 2.3768 32 1 7.3991 2.2527 1.6627 33 1 8.7572 3.2762 2.1892 34 1 7.2822 3.1757 3.1802 35 1 7.1989 5.2186 -0.5781 36 1 8.7085 4.4685 -0.0059 37 1 7.3504 3.4456 -0.5320 38 1 7.0349 6.5143 1.5509 39 1 7.0694 5.6651 3.1149 40 1 9.1982 8.6204 3.6593 41 1 3.1763 2.0826 -2.2283 42 1 5.6552 2.0742 -2.7659 43 1 6.0220 1.4654 -1.0641 44 1 4.2567 0.0040 -3.2050 45 1 4.6233 -0.6047 -1.5031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860735630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = -128.801634 kcal Electronic energy + Delta-G solvation = -23320.386904 eV Core-core repulsion = 19917.530207 eV Total energy + Delta-G solvation = -3402.856697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.182 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51210 -38.68440 -37.05208 -36.66592 -35.30097 -32.34191 -31.73366 -28.60064 -27.13003 -26.41471 -26.15282 -23.16833 -23.15378 -22.49974 -21.89809 -20.38954 -18.28090 -17.79291 -16.92610 -16.49917 -16.36496 -15.95729 -15.63946 -15.14272 -14.54821 -14.43721 -13.86211 -13.54584 -13.22747 -12.89730 -12.78629 -12.63261 -12.35028 -12.20688 -12.05696 -11.74509 -11.57970 -11.47688 -11.24856 -10.97754 -10.86131 -10.83198 -10.64662 -10.60267 -10.37181 -10.26200 -10.21509 -10.08625 -9.75689 -9.72892 -9.20171 -8.94510 -8.36851 -6.00898 -4.02143 2.32400 2.47686 3.31191 3.37956 3.38924 3.40366 3.91235 4.38230 4.44519 4.56202 4.68964 4.74439 4.80780 4.92592 5.07226 5.08582 5.22633 5.34778 5.40529 5.42803 5.51371 5.52713 5.63858 5.74185 5.82481 5.84464 5.87860 6.00664 6.07984 6.19849 6.38270 6.50550 6.63393 6.70587 6.80781 6.82584 7.10868 7.11591 7.13790 7.61119 7.72882 7.97011 8.01055 8.39437 9.02269 9.60962 11.10795 Molecular weight = 284.18amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.003396 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.167974 B = 8242.281474 C = 8770.322565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.134 3.866 5 H 0.095 0.905 6 C 0.460 3.540 7 O -0.493 6.493 8 O -0.344 6.344 9 C 0.079 3.921 10 C -0.057 4.057 11 C -0.126 4.126 12 C -0.125 4.125 13 C 0.035 3.965 14 C -0.509 4.509 15 H 0.061 0.939 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.183 4.183 23 C -0.157 4.157 24 C -0.174 4.174 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.951 -17.761 -9.501 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.075 3.925 5 H 0.113 0.887 6 C 0.301 3.699 7 O -0.379 6.379 8 O -0.261 6.261 9 C 0.007 3.993 10 C -0.057 4.057 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.003 4.003 14 C -0.547 4.547 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.201 4.201 23 C -0.194 4.194 24 C -0.211 4.211 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.135 0.865 42 H 0.118 0.882 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.289 -17.164 -9.234 22.523 hybrid contribution 0.993 0.231 0.177 1.035 sum -10.296 -16.933 -9.057 21.789 Atomic orbital electron populations 1.21735 0.93322 1.02247 1.03475 1.22614 0.95923 0.83143 1.00413 1.88021 1.18219 1.26910 1.94386 1.20861 0.83530 0.94481 0.93633 0.88722 1.23078 0.81869 0.87553 0.77407 1.90672 1.54511 1.48185 1.44576 1.86458 1.24386 1.43590 1.71653 1.23534 0.97734 0.81924 0.96156 1.20803 0.88547 0.99295 0.97087 1.21714 1.01959 0.95892 0.98713 1.21720 1.01995 0.99558 0.94987 1.19128 0.96840 0.89187 0.95096 1.21147 0.91307 1.05255 1.37036 0.92075 1.25015 0.97943 0.95968 0.95595 1.69962 1.34947 1.09867 1.38703 0.86620 0.85956 0.78114 0.77470 1.20733 1.21331 1.19871 1.22637 0.98226 1.04119 0.95148 1.23051 0.92264 0.99945 1.04160 1.23086 1.04207 0.91835 1.01957 0.90940 0.91626 0.91703 0.92697 0.93131 0.91580 0.91650 0.94276 0.91555 0.93799 0.93779 0.91639 0.94092 0.96341 0.96367 0.93005 0.86524 0.88151 0.87061 0.88423 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.06 0.49 6.44 37.16 0.24 0.73 16 3 O -0.36 -4.62 9.53 -55.14 -0.53 -5.15 16 4 C 0.13 1.65 2.82 -27.88 -0.08 1.57 16 5 H 0.10 0.95 7.65 -51.93 -0.40 0.56 16 6 C 0.46 7.46 7.26 36.01 0.26 7.72 16 7 O -0.49 -9.76 16.26 -25.46 -0.41 -10.17 16 8 O -0.34 -5.61 7.47 -39.26 -0.29 -5.91 16 9 C 0.08 1.48 4.32 37.15 0.16 1.64 16 10 C -0.06 -1.14 0.61 -154.51 -0.09 -1.23 16 11 C -0.13 -2.33 8.08 37.16 0.30 -2.03 16 12 C -0.13 -2.31 8.08 37.16 0.30 -2.01 16 13 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 14 C -0.51 -13.63 7.65 -34.44 -0.26 -13.90 16 15 H 0.06 1.57 5.68 -52.48 -0.30 1.28 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.18 -1.91 5.34 -90.58 -0.48 -2.39 16 23 C -0.16 -1.56 9.58 -26.73 -0.26 -1.81 16 24 C -0.17 -1.38 10.18 -26.69 -0.27 -1.65 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.04 0.63 7.68 -51.93 -0.40 0.23 16 33 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 37 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.11 1.21 7.34 -51.93 -0.38 0.83 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -31.26 367.12 -8.03 -39.29 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -8.03 Total: -2.11 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.01 Total: -11.92 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.23 Total: -21.23 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.26 -8.03 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860735630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.508 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds