Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46799 * 2 1 4 4 C 1.42909 * 113.99889 * 184.50821 * 3 2 1 5 5 H 1.09006 * 109.46751 * 328.47603 * 4 3 2 6 6 C 1.50706 * 109.47044 * 208.47911 * 4 3 2 7 7 O 1.20822 * 119.99632 * 354.99391 * 6 4 3 8 8 O 1.34230 * 119.99423 * 174.99698 * 6 4 3 9 9 C 1.45200 * 116.99337 * 179.97438 * 8 6 4 10 10 C 1.52994 * 109.46921 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47256 * 300.00145 * 10 9 8 12 12 C 1.52999 * 109.47282 * 60.00212 * 10 9 8 13 13 C 1.53002 * 109.47195 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47475 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99533 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00299 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00145 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99974 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47299 * 89.99935 * 18 16 14 20 20 H 1.48501 * 109.46870 * 210.00631 * 18 16 14 21 21 H 1.48507 * 109.47084 * 330.00024 * 18 16 14 22 22 C 1.52992 * 109.47142 * 88.47604 * 4 3 2 23 23 C 1.53005 * 117.49705 * 185.32195 * 22 4 3 24 24 C 1.53001 * 60.03272 * 107.47761 * 23 22 4 25 25 H 1.08997 * 109.47199 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47281 * 300.00486 * 1 2 3 27 27 H 1.09001 * 109.46681 * 60.00314 * 1 2 3 28 28 H 1.08991 * 109.47246 * 239.99855 * 2 1 3 29 29 H 1.09001 * 109.46681 * 119.99685 * 2 1 3 30 30 H 1.09006 * 109.47206 * 299.99939 * 9 8 6 31 31 H 1.09001 * 109.47337 * 60.00160 * 9 8 6 32 32 H 1.08993 * 109.46893 * 59.99868 * 11 10 9 33 33 H 1.09005 * 109.47121 * 180.02562 * 11 10 9 34 34 H 1.09001 * 109.46903 * 299.99848 * 11 10 9 35 35 H 1.08999 * 109.47214 * 60.00261 * 12 10 9 36 36 H 1.09003 * 109.47167 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46779 * 300.00047 * 12 10 9 38 38 H 1.08999 * 109.47451 * 299.99831 * 13 10 9 39 39 H 1.09001 * 109.47175 * 60.00023 * 13 10 9 40 40 H 0.96995 * 120.00360 * 179.97438 * 17 16 14 41 41 H 1.08997 * 115.55273 * 39.65580 * 22 4 3 42 42 H 1.08998 * 117.49885 * 214.97822 * 23 22 4 43 43 H 1.08996 * 117.49596 * 359.97438 * 23 22 4 44 44 H 1.09003 * 117.49884 * 107.49576 * 24 23 22 45 45 H 1.08995 * 117.50117 * 252.52256 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4271 1.4615 -0.1026 5 1 3.8963 0.6035 0.3790 6 6 3.8796 2.7284 0.5767 7 8 3.0630 3.5031 1.0158 8 8 5.1897 2.9960 0.6937 9 6 5.5525 4.2346 1.3589 10 6 7.0764 4.3659 1.3964 11 6 7.6715 3.1825 2.1621 12 6 7.6228 4.3755 -0.0326 13 6 7.4587 5.6714 2.0968 14 6 8.9598 5.8004 2.1343 15 1 9.5791 5.0286 1.7015 16 6 9.5424 6.9041 2.7202 17 7 8.7883 7.8441 3.2468 18 14 11.4030 7.0643 2.7661 19 1 11.8689 7.7742 1.5479 20 1 11.8039 7.8337 3.9714 21 1 12.0152 5.7122 2.8157 22 6 3.8303 1.5018 -1.5779 23 6 5.3256 1.4969 -1.9020 24 6 4.4821 0.2482 -2.1669 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.1289 5.0778 0.8131 31 1 5.1629 4.2281 2.3768 32 1 7.3991 2.2527 1.6627 33 1 8.7572 3.2762 2.1892 34 1 7.2822 3.1757 3.1802 35 1 7.1989 5.2186 -0.5781 36 1 8.7085 4.4685 -0.0059 37 1 7.3504 3.4456 -0.5320 38 1 7.0349 6.5143 1.5509 39 1 7.0694 5.6651 3.1149 40 1 9.1982 8.6204 3.6593 41 1 3.1763 2.0826 -2.2283 42 1 5.6552 2.0742 -2.7659 43 1 6.0220 1.4654 -1.0641 44 1 4.2567 0.0040 -3.2050 45 1 4.6233 -0.6047 -1.5031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860735630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = -144.874145 kcal Electronic energy + Delta-G solvation = -23321.083860 eV Core-core repulsion = 19917.530207 eV Total energy + Delta-G solvation = -3403.553654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.182 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78423 -39.70808 -38.55563 -37.49413 -36.79648 -34.40793 -32.43974 -29.81022 -28.97493 -27.94092 -27.59450 -25.05750 -23.82491 -23.26077 -22.92580 -21.48589 -19.93318 -18.93362 -18.34271 -17.96218 -17.66371 -17.28665 -16.63677 -16.49481 -15.88251 -15.42769 -15.30360 -14.93802 -14.75089 -14.27138 -14.02524 -13.92798 -13.48698 -13.43431 -13.22666 -12.96496 -12.74364 -12.65105 -12.41555 -12.33862 -12.29571 -12.24498 -12.17239 -11.99056 -11.86236 -11.83501 -11.39205 -11.33245 -11.12010 -10.96078 -10.89118 -10.58870 -10.52611 -8.15404 -6.23426 1.05715 1.29401 1.43474 1.43738 1.54468 2.44010 2.61004 3.02365 3.19323 3.57428 3.61663 3.77708 3.92634 3.93078 3.98805 4.17936 4.19436 4.22291 4.32350 4.47716 4.50843 4.52334 4.59504 4.74143 4.83249 4.86205 5.02692 5.03805 5.04758 5.08987 5.14948 5.20323 5.27427 5.32629 5.39827 5.44219 5.47016 5.51769 5.54456 5.75457 5.87660 6.03021 6.27925 6.68834 6.90734 7.44415 8.97453 Molecular weight = 284.18amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.003396 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.167974 B = 8242.281474 C = 8770.322565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.388 6.388 4 C 0.142 3.858 5 H 0.123 0.877 6 C 0.456 3.544 7 O -0.536 6.536 8 O -0.331 6.331 9 C 0.089 3.911 10 C -0.052 4.052 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.039 3.961 14 C -0.513 4.513 15 H 0.074 0.926 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.961 3.039 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.258 1.258 22 C -0.198 4.198 23 C -0.169 4.169 24 C -0.142 4.142 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.056 0.944 37 H 0.072 0.928 38 H -0.013 1.013 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.005 -20.941 -11.008 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.307 6.307 4 C 0.083 3.917 5 H 0.141 0.859 6 C 0.300 3.700 7 O -0.426 6.426 8 O -0.247 6.247 9 C 0.015 3.985 10 C -0.052 4.052 11 C -0.176 4.176 12 C -0.176 4.176 13 C 0.002 3.998 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.786 3.214 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.182 1.182 22 C -0.217 4.217 23 C -0.206 4.206 24 C -0.179 4.179 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.069 0.931 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.132 0.868 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.339 -20.381 -10.761 25.261 hybrid contribution 0.589 1.192 0.636 1.474 sum -9.750 -19.189 -10.125 23.787 Atomic orbital electron populations 1.21781 0.92815 1.03685 1.02472 1.22904 0.96413 0.81521 1.01974 1.87996 1.18487 1.29643 1.94605 1.20961 0.83735 0.92528 0.94449 0.85950 1.24166 0.81002 0.88527 0.76344 1.90655 1.55333 1.50005 1.46560 1.86453 1.25074 1.41985 1.71164 1.23154 0.96865 0.82835 0.95659 1.20608 0.89494 0.97259 0.97850 1.21648 1.01083 0.96403 0.98484 1.21652 1.01151 1.00912 0.93842 1.18994 0.96189 0.91069 0.93536 1.21539 0.92206 1.05260 1.36099 0.90797 1.25957 1.03039 0.95763 0.95390 1.70118 1.37162 1.10658 1.40094 0.85507 0.79894 0.78667 0.77367 1.20071 1.21499 1.18239 1.22547 0.98522 1.06789 0.93800 1.23091 0.91562 1.01857 1.04096 1.23217 1.00623 0.91018 1.03026 0.88243 0.93112 0.92248 0.90539 0.91993 0.92905 0.92789 0.91128 0.92436 0.94489 0.94599 0.92483 0.90926 0.99431 0.99399 0.93091 0.87508 0.87970 0.87798 0.86752 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.72 6.44 71.98 0.46 1.18 16 3 O -0.39 -9.59 9.53 -129.95 -1.24 -10.83 16 4 C 0.14 3.22 2.82 29.85 0.08 3.31 16 5 H 0.12 2.05 7.65 -2.38 -0.02 2.03 16 6 C 0.46 14.63 7.26 71.24 0.52 15.14 16 7 O -0.54 -21.81 16.26 28.39 0.46 -21.34 16 8 O -0.33 -10.49 7.47 -51.42 -0.38 -10.87 16 9 C 0.09 3.37 4.32 71.98 0.31 3.69 16 10 C -0.05 -2.07 0.61 -52.18 -0.03 -2.11 16 11 C -0.12 -4.27 8.08 71.98 0.58 -3.69 16 12 C -0.12 -4.24 8.08 71.98 0.58 -3.66 16 13 C 0.04 2.03 4.04 29.85 0.12 2.15 16 14 C -0.51 -27.75 7.65 25.60 0.20 -27.55 16 15 H 0.07 3.74 5.68 -2.91 -0.02 3.73 16 16 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 17 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 18 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 22 C -0.20 -3.68 5.34 -10.77 -0.06 -3.74 16 23 C -0.17 -2.86 9.58 30.60 0.29 -2.57 16 24 C -0.14 -1.67 10.18 30.62 0.31 -1.35 16 25 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 2.13 8.13 -2.38 -0.02 2.11 16 31 H 0.05 2.16 8.13 -2.39 -0.02 2.14 16 32 H 0.07 2.08 7.68 -2.39 -0.02 2.06 16 33 H 0.06 2.16 6.62 -2.38 -0.02 2.14 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 37 H 0.07 2.13 7.68 -2.39 -0.02 2.11 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.10 1.93 7.34 -2.39 -0.02 1.91 16 44 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.11 0.96 8.08 -2.39 -0.02 0.94 16 Total: -1.00 -69.96 367.12 6.66 -63.30 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.94 Total: 11.42 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 4.57 Total: -20.30 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.28 Total: -57.04 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.16 Total: -43.05 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -69.96 6.66 -63.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860735630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.575 kcal (2) G-P(sol) polarization free energy of solvation -69.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds