Wall clock time and date at job start Tue Mar 31 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.99567 * 2 1 4 4 C 1.54324 * 109.88384 * 238.91163 * 2 1 3 5 5 H 1.09000 * 110.71759 * 336.92886 * 4 2 1 6 6 N 1.46499 * 110.72503 * 100.02061 * 4 2 1 7 7 C 1.34770 * 120.00269 * 202.56090 * 6 4 2 8 8 O 1.21282 * 120.00406 * 0.02562 * 7 6 4 9 9 C 1.50701 * 120.00057 * 180.02562 * 7 6 4 10 10 F 1.39901 * 110.54053 * 312.61113 * 9 7 6 11 11 C 1.54267 * 110.48772 * 189.99810 * 9 7 6 12 12 C 1.53876 * 106.59870 * 217.70999 * 11 9 7 13 13 C 1.54261 * 106.59990 * 0.02562 * 12 11 9 14 14 C 1.54888 * 104.19672 * 23.60631 * 13 12 11 15 15 C 1.55158 * 103.10305 * 218.47841 * 4 2 1 16 16 C 1.54909 * 101.58119 * 35.40975 * 15 4 2 17 17 N 1.47316 * 110.06747 * 121.17453 * 2 1 3 18 18 C 1.36935 * 125.61714 * 298.25107 * 17 2 1 19 19 H 1.08001 * 119.99959 * 359.83457 * 18 17 2 20 20 C 1.38812 * 120.00254 * 179.82926 * 18 17 2 21 21 N 1.31614 * 119.99743 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99871 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47457 * 60.00644 * 22 20 18 24 24 H 1.48504 * 109.46827 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47487 * 300.00057 * 22 20 18 26 26 H 1.09002 * 109.47168 * 181.09255 * 1 2 3 27 27 H 1.08998 * 109.47033 * 301.08939 * 1 2 3 28 28 H 1.08998 * 109.47415 * 61.09049 * 1 2 3 29 29 H 0.97006 * 119.99348 * 22.56375 * 6 4 2 30 30 H 1.08995 * 110.03032 * 98.42726 * 11 9 7 31 31 H 1.08998 * 110.03405 * 336.99665 * 11 9 7 32 32 H 1.08998 * 110.02768 * 119.28860 * 12 11 9 33 33 H 1.08999 * 110.02894 * 240.66545 * 12 11 9 34 34 H 1.09000 * 110.48928 * 142.28640 * 13 12 11 35 35 H 1.08999 * 110.48469 * 264.93049 * 13 12 11 36 36 H 1.09005 * 110.75648 * 80.37263 * 14 13 12 37 37 H 1.08999 * 110.75852 * 203.74195 * 14 13 12 38 38 H 1.08997 * 111.00223 * 153.48526 * 15 4 2 39 39 H 1.09000 * 111.00184 * 277.33798 * 15 4 2 40 40 H 1.08993 * 110.36904 * 81.83132 * 16 15 4 41 41 H 1.09002 * 110.36767 * 204.15805 * 16 15 4 42 42 H 0.97003 * 119.99786 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2428 5 1 1.3039 -1.4435 -1.6202 6 7 2.4554 0.1963 -2.2876 7 6 2.5054 -0.2022 -3.5740 8 8 2.2184 -1.3436 -3.8670 9 6 2.9180 0.7704 -4.6487 10 9 2.2339 1.9820 -4.5031 11 6 2.6623 0.1707 -6.0468 12 6 3.8328 0.6203 -6.9388 13 6 4.7593 1.4770 -6.0514 14 6 4.4490 1.0032 -4.6097 15 6 3.2870 -1.5176 -0.6960 16 6 2.8161 -1.8831 0.7339 17 7 2.0355 -0.7163 1.1839 18 6 1.8142 -0.3586 2.4871 19 1 1.2261 0.5183 2.7139 20 6 2.3456 -1.1233 3.5165 21 7 3.0626 -2.1918 3.2400 22 14 2.0443 -0.6349 5.2942 23 1 0.5844 -0.6323 5.5662 24 1 2.7143 -1.6070 6.1949 25 1 2.5951 0.7230 5.5347 26 1 -0.3633 -1.0275 0.0196 27 1 -0.3633 0.5307 0.8800 28 1 -0.3634 0.4968 -0.8996 29 1 2.6846 1.1093 -2.0533 30 1 1.7213 0.5469 -6.4480 31 1 2.6348 -0.9173 -5.9871 32 1 4.3733 -0.2496 -7.3119 33 1 3.4596 1.2139 -7.7733 34 1 5.8043 1.2893 -6.2980 35 1 4.5238 2.5352 -6.1641 36 1 4.9756 0.0753 -4.3863 37 1 4.7036 1.7770 -3.8856 38 1 3.4811 -2.4143 -1.2846 39 1 4.1664 -0.8744 -0.6652 40 1 2.1881 -2.7736 0.7104 41 1 3.6743 -2.0402 1.3873 42 1 3.4343 -2.7259 3.9594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088681453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:24 Heat of formation + Delta-G solvation = -71.461571 kcal Electronic energy + Delta-G solvation = -23410.793323 eV Core-core repulsion = 19919.255523 eV Total energy + Delta-G solvation = -3491.537799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.97940 -39.86522 -37.91165 -36.82039 -34.10926 -32.07639 -30.41422 -29.43082 -29.10980 -28.27798 -24.89623 -24.00922 -22.25895 -20.98011 -20.26541 -20.15155 -19.46916 -17.86571 -16.84641 -16.53380 -15.84131 -15.55288 -15.03233 -14.69457 -14.48747 -14.22505 -13.99280 -13.66473 -13.45285 -13.18762 -12.83172 -12.23029 -12.12805 -11.95191 -11.84501 -11.59921 -11.58063 -11.45504 -11.16695 -11.08721 -10.86650 -10.82608 -10.71248 -10.58177 -10.42929 -10.13629 -9.79757 -9.65393 -9.52429 -8.74259 -8.65375 -6.89888 -5.67129 -3.10056 2.49869 3.09404 3.39264 3.43742 3.44912 3.98099 4.06353 4.35939 4.45493 4.52974 4.94160 5.03916 5.09313 5.12781 5.25850 5.30558 5.40140 5.50788 5.52127 5.59746 5.61129 5.72256 5.78049 5.86670 5.96178 6.05092 6.09973 6.21055 6.28482 6.31742 6.49040 6.57026 6.67098 6.83851 7.06255 7.48208 7.59148 7.60061 7.82612 8.19291 8.32974 9.18750 9.79350 10.43220 11.36229 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.003732 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.981315 B = 7501.869600 C = 7612.899554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.132 3.868 5 H 0.093 0.907 6 N -0.703 5.703 7 C 0.504 3.496 8 O -0.528 6.528 9 C 0.097 3.903 10 F -0.191 7.191 11 C -0.137 4.137 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.138 4.138 15 C -0.152 4.152 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.401 0.599 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.110 0.890 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 6.884 -17.772 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.055 0.945 4 C 0.028 3.972 5 H 0.111 0.889 6 N -0.352 5.352 7 C 0.287 3.713 8 O -0.404 6.404 9 C 0.076 3.924 10 F -0.172 7.172 11 C -0.175 4.175 12 C -0.161 4.161 13 C -0.161 4.161 14 C -0.176 4.176 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.320 5.320 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.236 0.764 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.128 0.872 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.487 5.999 -17.722 18.875 hybrid contribution -0.262 0.781 1.107 1.380 sum 2.225 6.780 -16.615 18.083 Atomic orbital electron populations 1.22231 0.97763 1.01473 1.00026 1.21046 0.92655 0.94819 0.86813 0.94528 1.22241 0.97821 0.90763 0.86360 0.88858 1.46069 1.67451 1.15364 1.06343 1.20517 0.78141 0.88897 0.83755 1.90703 1.48269 1.19480 1.81950 1.21999 0.93635 0.80500 0.96298 1.92891 1.81250 1.46200 1.96852 1.22667 0.99912 1.03715 0.91184 1.22142 0.95883 0.99937 0.98110 1.22376 1.00091 1.00148 0.93465 1.23083 0.91808 1.03593 0.99118 1.23401 0.96643 0.99265 0.99887 1.21955 0.97467 0.88361 0.89407 1.44554 1.59309 1.28141 1.00042 1.18988 1.27414 1.08085 0.80499 0.90491 1.24781 1.00350 0.97327 0.98060 1.69778 1.39125 1.17712 1.30355 0.86152 0.77657 0.77421 0.84243 1.21215 1.21579 1.21171 0.92893 0.92631 0.94252 0.76406 0.90114 0.87921 0.91065 0.91226 0.90651 0.90911 0.88972 0.89454 0.91940 0.91935 0.96742 0.87234 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.15 37.16 0.34 -2.59 16 2 C 0.15 3.12 3.49 -66.79 -0.23 2.89 16 3 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 4 C 0.13 2.42 2.79 -66.10 -0.18 2.24 16 5 H 0.09 1.83 7.33 -51.93 -0.38 1.45 16 6 N -0.70 -10.65 5.16 -52.03 -0.27 -10.92 16 7 C 0.50 7.58 6.88 -10.99 -0.08 7.51 16 8 O -0.53 -9.52 15.10 5.56 0.08 -9.44 16 9 C 0.10 1.15 1.37 -90.10 -0.12 1.03 16 10 F -0.19 -2.40 16.84 2.25 0.04 -2.36 16 11 C -0.14 -1.44 6.06 -25.61 -0.16 -1.60 16 12 C -0.12 -0.99 6.80 -25.61 -0.17 -1.16 16 13 C -0.12 -0.96 6.83 -25.08 -0.17 -1.13 16 14 C -0.14 -1.32 6.11 -24.73 -0.15 -1.47 16 15 C -0.15 -2.99 6.77 -24.58 -0.17 -3.15 16 16 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 17 N -0.60 -14.78 3.14 -162.35 -0.51 -15.29 16 18 C -0.22 -6.01 9.91 -15.06 -0.15 -6.16 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 21 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 22 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 1.07 8.06 -51.93 -0.42 0.65 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.40 5.34 8.28 -40.82 -0.34 5.00 16 30 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 31 H 0.10 1.21 6.75 -51.93 -0.35 0.86 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -30.17 336.46 -8.21 -38.38 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.81 Total: 3.99 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.36 Total: -0.27 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.22 Total: -52.13 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.17 -8.21 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088681453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.080 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds