Wall clock time and date at job start Tue Mar 31 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.99567 * 2 1 4 4 C 1.54324 * 109.88384 * 238.91163 * 2 1 3 5 5 H 1.09000 * 110.71759 * 336.92886 * 4 2 1 6 6 N 1.46499 * 110.72503 * 100.02061 * 4 2 1 7 7 C 1.34770 * 120.00269 * 202.56090 * 6 4 2 8 8 O 1.21282 * 120.00406 * 0.02562 * 7 6 4 9 9 C 1.50701 * 120.00057 * 180.02562 * 7 6 4 10 10 F 1.39901 * 110.54053 * 312.61113 * 9 7 6 11 11 C 1.54267 * 110.48772 * 189.99810 * 9 7 6 12 12 C 1.53876 * 106.59870 * 217.70999 * 11 9 7 13 13 C 1.54261 * 106.59990 * 0.02562 * 12 11 9 14 14 C 1.54888 * 104.19672 * 23.60631 * 13 12 11 15 15 C 1.55158 * 103.10305 * 218.47841 * 4 2 1 16 16 C 1.54909 * 101.58119 * 35.40975 * 15 4 2 17 17 N 1.47316 * 110.06747 * 121.17453 * 2 1 3 18 18 C 1.36935 * 125.61714 * 298.25107 * 17 2 1 19 19 H 1.08001 * 119.99959 * 359.83457 * 18 17 2 20 20 C 1.38812 * 120.00254 * 179.82926 * 18 17 2 21 21 N 1.31614 * 119.99743 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99871 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47457 * 60.00644 * 22 20 18 24 24 H 1.48504 * 109.46827 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47487 * 300.00057 * 22 20 18 26 26 H 1.09002 * 109.47168 * 181.09255 * 1 2 3 27 27 H 1.08998 * 109.47033 * 301.08939 * 1 2 3 28 28 H 1.08998 * 109.47415 * 61.09049 * 1 2 3 29 29 H 0.97006 * 119.99348 * 22.56375 * 6 4 2 30 30 H 1.08995 * 110.03032 * 98.42726 * 11 9 7 31 31 H 1.08998 * 110.03405 * 336.99665 * 11 9 7 32 32 H 1.08998 * 110.02768 * 119.28860 * 12 11 9 33 33 H 1.08999 * 110.02894 * 240.66545 * 12 11 9 34 34 H 1.09000 * 110.48928 * 142.28640 * 13 12 11 35 35 H 1.08999 * 110.48469 * 264.93049 * 13 12 11 36 36 H 1.09005 * 110.75648 * 80.37263 * 14 13 12 37 37 H 1.08999 * 110.75852 * 203.74195 * 14 13 12 38 38 H 1.08997 * 111.00223 * 153.48526 * 15 4 2 39 39 H 1.09000 * 111.00184 * 277.33798 * 15 4 2 40 40 H 1.08993 * 110.36904 * 81.83132 * 16 15 4 41 41 H 1.09002 * 110.36767 * 204.15805 * 16 15 4 42 42 H 0.97003 * 119.99786 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2428 5 1 1.3039 -1.4435 -1.6202 6 7 2.4554 0.1963 -2.2876 7 6 2.5054 -0.2022 -3.5740 8 8 2.2184 -1.3436 -3.8670 9 6 2.9180 0.7704 -4.6487 10 9 2.2339 1.9820 -4.5031 11 6 2.6623 0.1707 -6.0468 12 6 3.8328 0.6203 -6.9388 13 6 4.7593 1.4770 -6.0514 14 6 4.4490 1.0032 -4.6097 15 6 3.2870 -1.5176 -0.6960 16 6 2.8161 -1.8831 0.7339 17 7 2.0355 -0.7163 1.1839 18 6 1.8142 -0.3586 2.4871 19 1 1.2261 0.5183 2.7139 20 6 2.3456 -1.1233 3.5165 21 7 3.0626 -2.1918 3.2400 22 14 2.0443 -0.6349 5.2942 23 1 0.5844 -0.6323 5.5662 24 1 2.7143 -1.6070 6.1949 25 1 2.5951 0.7230 5.5347 26 1 -0.3633 -1.0275 0.0196 27 1 -0.3633 0.5307 0.8800 28 1 -0.3634 0.4968 -0.8996 29 1 2.6846 1.1093 -2.0533 30 1 1.7213 0.5469 -6.4480 31 1 2.6348 -0.9173 -5.9871 32 1 4.3733 -0.2496 -7.3119 33 1 3.4596 1.2139 -7.7733 34 1 5.8043 1.2893 -6.2980 35 1 4.5238 2.5352 -6.1641 36 1 4.9756 0.0753 -4.3863 37 1 4.7036 1.7770 -3.8856 38 1 3.4811 -2.4143 -1.2846 39 1 4.1664 -0.8744 -0.6652 40 1 2.1881 -2.7736 0.7104 41 1 3.6743 -2.0402 1.3873 42 1 3.4343 -2.7259 3.9594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088681453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:24 Heat of formation + Delta-G solvation = -89.411451 kcal Electronic energy + Delta-G solvation = -23411.571688 eV Core-core repulsion = 19919.255523 eV Total energy + Delta-G solvation = -3492.316165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.94361 -41.15944 -39.40508 -37.76742 -35.69501 -33.89518 -32.09891 -30.85263 -29.85339 -29.60796 -26.54193 -25.84658 -23.41525 -22.07926 -21.63135 -21.55264 -20.71697 -19.05676 -18.70482 -17.72700 -17.10609 -16.61612 -16.40770 -16.05750 -15.77866 -15.57884 -15.45018 -15.06980 -14.58796 -14.41326 -14.02949 -13.96104 -13.74847 -13.28258 -13.11375 -12.95831 -12.73415 -12.63660 -12.58245 -12.29236 -12.27033 -12.14410 -12.12357 -12.03855 -11.84671 -11.59670 -11.48037 -11.34704 -10.80975 -10.72406 -10.14687 -8.91514 -7.75264 -5.20486 1.30157 1.48596 1.51287 1.57426 1.87284 2.51335 3.09925 3.24333 3.35019 3.38845 3.56220 3.70725 3.80241 3.91319 4.14980 4.20257 4.33078 4.38723 4.40772 4.46668 4.58335 4.62969 4.66020 4.76622 4.80922 4.89475 4.98247 5.00540 5.05172 5.09700 5.18356 5.24771 5.30389 5.40672 5.48741 5.53778 5.58399 5.78812 6.29642 6.35314 6.98731 7.10625 7.77636 8.41170 9.26423 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.003732 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.981315 B = 7501.869600 C = 7612.899554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.051 0.949 4 C 0.149 3.851 5 H 0.081 0.919 6 N -0.695 5.695 7 C 0.502 3.498 8 O -0.559 6.559 9 C 0.100 3.900 10 F -0.193 7.193 11 C -0.139 4.139 12 C -0.120 4.120 13 C -0.119 4.119 14 C -0.138 4.138 15 C -0.136 4.136 16 C 0.157 3.843 17 N -0.614 5.614 18 C -0.231 4.231 19 H 0.084 0.916 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.979 3.021 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.275 1.275 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.413 0.587 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.072 0.928 40 H -0.015 1.015 41 H 0.080 0.920 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 8.927 -19.223 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.043 3.957 3 H 0.069 0.931 4 C 0.044 3.956 5 H 0.099 0.901 6 N -0.346 5.346 7 C 0.287 3.713 8 O -0.438 6.438 9 C 0.079 3.921 10 F -0.174 7.174 11 C -0.177 4.177 12 C -0.157 4.157 13 C -0.156 4.156 14 C -0.176 4.176 15 C -0.176 4.176 16 C 0.032 3.968 17 N -0.339 5.339 18 C -0.359 4.359 19 H 0.102 0.898 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.807 3.193 23 H -0.207 1.207 24 H -0.223 1.223 25 H -0.201 1.201 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.250 0.750 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.003 0.997 41 H 0.098 0.902 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.782 8.093 -19.207 21.027 hybrid contribution -0.396 0.142 1.513 1.571 sum 2.385 8.235 -17.693 19.661 Atomic orbital electron populations 1.22120 0.96542 1.00802 1.01177 1.21238 0.93514 0.95052 0.85856 0.93126 1.21811 0.96584 0.90770 0.86460 0.90107 1.45904 1.67425 1.15353 1.05887 1.21153 0.77003 0.89106 0.84007 1.90695 1.49466 1.21175 1.82455 1.22051 0.95105 0.79583 0.95411 1.92889 1.81521 1.46143 1.96829 1.22702 1.01374 1.02641 0.90962 1.22159 0.94940 1.00584 0.98021 1.22398 1.01045 1.00339 0.91803 1.23150 0.89602 1.03918 1.00895 1.23194 0.97467 0.99954 0.96979 1.21685 0.95822 0.87717 0.91593 1.44785 1.59820 1.28514 1.00776 1.19361 1.26765 1.08064 0.81755 0.89798 1.25598 1.00743 0.97632 1.01917 1.70026 1.40299 1.18768 1.30886 0.85143 0.77496 0.77145 0.79480 1.20669 1.22256 1.20112 0.94405 0.93234 0.91335 0.74995 0.89937 0.89550 0.90270 0.89785 0.88890 0.90252 0.89256 0.88480 0.91319 0.90923 0.99656 0.90250 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.15 71.98 0.66 -4.72 16 2 C 0.15 5.92 3.49 45.28 0.16 6.08 16 3 H 0.05 1.89 7.70 -2.38 -0.02 1.87 16 4 C 0.15 5.34 2.79 46.18 0.13 5.47 16 5 H 0.08 3.15 7.33 -2.39 -0.02 3.13 16 6 N -0.70 -19.89 5.16 -436.92 -2.26 -22.15 16 7 C 0.50 14.44 6.88 87.66 0.60 15.04 16 8 O -0.56 -19.90 15.10 -3.04 -0.05 -19.94 16 9 C 0.10 2.17 1.37 -10.46 -0.01 2.15 16 10 F -0.19 -4.37 16.84 44.97 0.76 -3.61 16 11 C -0.14 -2.69 6.06 31.32 0.19 -2.50 16 12 C -0.12 -1.58 6.80 31.32 0.21 -1.37 16 13 C -0.12 -1.45 6.83 31.67 0.22 -1.23 16 14 C -0.14 -2.27 6.11 31.89 0.19 -2.07 16 15 C -0.14 -5.33 6.77 31.99 0.22 -5.12 16 16 C 0.16 7.84 5.89 86.85 0.51 8.35 16 17 N -0.61 -30.71 3.14 -667.56 -2.10 -32.81 16 18 C -0.23 -12.55 9.91 84.03 0.83 -11.71 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 20 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 21 N -0.95 -56.20 10.09 21.65 0.22 -55.99 16 22 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.85 8.06 -2.39 -0.02 1.83 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.41 9.99 8.28 -92.70 -0.77 9.22 16 30 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 31 H 0.09 1.98 6.75 -2.39 -0.02 1.96 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.54 8.05 -2.38 -0.02 1.52 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 40 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.08 4.47 5.87 -2.39 -0.01 4.45 16 42 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -65.71 336.46 3.22 -62.49 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.24 Total: 19.75 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 4.37 Total: 5.13 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -4.13 Total: -110.94 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.76 Total: -3.61 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.71 3.22 -62.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088681453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.920 kcal (2) G-P(sol) polarization free energy of solvation -65.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds