Wall clock time and date at job start Tue Mar 31 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 119.99658 * 2 1 4 4 H 1.08005 * 120.00409 * 203.06804 * 3 2 1 5 5 C 1.38815 * 120.00442 * 23.06920 * 3 2 1 6 6 N 1.31625 * 119.99687 * 11.66310 * 5 3 2 7 7 Si 1.86796 * 120.00680 * 191.66647 * 5 3 2 8 8 H 1.48509 * 109.46576 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47266 * 119.99394 * 7 5 3 10 10 H 1.48494 * 109.47436 * 240.00203 * 7 5 3 11 11 C 1.46496 * 120.00266 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46974 * 299.99582 * 11 2 1 13 13 C 1.53000 * 109.47408 * 180.02562 * 12 11 2 14 14 C 1.52995 * 109.47198 * 300.00444 * 13 12 11 15 15 C 1.47207 * 109.46977 * 299.99442 * 14 13 12 16 16 N 5.01153 * 68.88127 * 180.02562 * 2 1 3 17 17 C 1.50702 * 109.47242 * 179.97438 * 14 13 12 18 18 C 1.38233 * 119.99789 * 179.97438 * 17 14 13 19 19 C 1.38234 * 119.99973 * 179.97438 * 18 17 14 20 20 C 1.38241 * 119.99647 * 0.27578 * 19 18 17 21 21 C 1.38232 * 119.99846 * 359.53489 * 20 19 18 22 22 C 1.38228 * 120.00275 * 0.42191 * 21 20 19 23 23 C 1.53003 * 109.47303 * 59.99492 * 14 13 12 24 24 C 1.52994 * 109.47396 * 59.99505 * 11 2 1 25 25 H 1.08999 * 109.46906 * 273.86212 * 1 2 3 26 26 H 1.08997 * 109.47087 * 33.86516 * 1 2 3 27 27 H 1.08997 * 109.46531 * 153.86934 * 1 2 3 28 28 H 0.96995 * 119.99840 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.47219 * 179.97438 * 11 2 1 30 30 H 1.09003 * 109.47027 * 60.00030 * 12 11 2 31 31 H 1.09004 * 109.46936 * 300.00065 * 12 11 2 32 32 H 1.08995 * 109.47102 * 179.97438 * 13 12 11 33 33 H 1.09003 * 109.47008 * 60.00012 * 13 12 11 34 34 H 1.07998 * 120.00165 * 0.02562 * 18 17 14 35 35 H 1.07999 * 120.00419 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.99723 * 179.72730 * 20 19 18 37 37 H 1.08004 * 119.99691 * 180.20159 * 21 20 19 38 38 H 1.08004 * 120.00397 * 179.78558 * 22 21 20 39 39 H 1.08995 * 109.46713 * 60.00265 * 23 14 13 40 40 H 1.09004 * 109.46936 * 180.02562 * 23 14 13 41 41 H 1.09003 * 109.47120 * 300.00286 * 24 11 2 42 42 H 1.08995 * 109.47256 * 60.00306 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1649 1.2235 -0.3665 5 6 1.5388 2.3400 0.4710 6 7 0.3993 2.2615 1.1251 7 14 2.3339 4.0045 0.1767 8 1 3.6005 3.8217 -0.5769 9 1 1.4101 4.8626 -0.6079 10 1 2.6237 4.6524 1.4811 11 6 2.1976 -1.2687 -0.0006 12 6 1.8280 -2.0715 1.2484 13 6 2.5935 -3.3962 1.2482 14 6 2.2246 -4.1983 -0.0013 15 6 0.7774 -4.4679 -0.0017 16 7 -0.3406 -4.6749 -0.0021 17 6 2.9791 -5.5028 -0.0018 18 6 2.8065 -6.4006 -1.0386 19 6 3.4990 -7.5970 -1.0394 20 6 4.3596 -7.8981 -0.0003 21 6 4.5351 -6.9986 1.0345 22 6 3.8433 -5.8018 1.0348 23 6 2.5941 -3.3955 -1.2503 24 6 1.8280 -2.0705 -1.2500 25 1 -0.3633 0.0692 1.0253 26 1 -0.3633 0.8533 -0.5726 27 1 -0.3632 -0.9226 -0.4526 28 1 -0.0273 3.0679 1.4546 29 1 3.2692 -1.0694 -0.0009 30 1 0.7564 -2.2707 1.2484 31 1 2.0914 -1.5002 2.1386 32 1 2.3306 -3.9679 2.1382 33 1 3.6651 -3.1966 1.2485 34 1 2.1314 -6.1669 -1.8486 35 1 3.3645 -8.2983 -1.8497 36 1 4.8973 -8.8348 0.0013 37 1 5.2099 -7.2324 1.8446 38 1 3.9778 -5.1005 1.8451 39 1 3.6656 -3.1959 -1.2499 40 1 2.3308 -3.9668 -2.1405 41 1 0.7563 -2.2697 -1.2501 42 1 2.0912 -1.4986 -2.1398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170388831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:05 Heat of formation + Delta-G solvation = 65.734605 kcal Electronic energy + Delta-G solvation = -22369.856213 eV Core-core repulsion = 19315.036911 eV Total energy + Delta-G solvation = -3054.819302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47349 -38.24646 -36.01432 -34.72671 -32.36999 -31.43392 -30.41425 -30.27958 -27.91058 -25.94237 -24.11528 -23.36126 -21.97599 -21.85390 -21.24319 -19.29111 -17.34932 -16.76234 -16.39447 -15.53161 -15.09738 -15.08953 -14.36380 -14.22846 -13.83240 -13.59951 -13.45972 -13.21284 -12.95724 -12.65583 -12.55278 -12.29158 -12.26410 -11.88608 -11.67074 -11.44680 -11.29118 -11.11622 -10.94103 -10.76300 -10.74786 -10.52478 -10.27777 -10.12777 -9.80508 -9.72752 -9.51886 -9.06616 -8.91618 -8.50765 -6.70057 -5.68017 -3.14386 1.14134 1.24951 2.94836 2.96197 3.39426 3.46504 3.48383 3.56348 4.09758 4.44502 4.54443 4.67051 4.82996 4.92817 4.96489 4.98542 5.29794 5.35530 5.40356 5.47225 5.57346 5.58932 5.70213 5.72844 5.83840 5.87304 5.94176 6.10227 6.19274 6.22586 6.32033 6.34699 6.37929 6.43049 6.54235 6.64361 6.81897 6.85312 7.02796 7.06289 7.45250 7.75123 7.78880 7.85073 8.44624 9.28152 9.92248 10.42013 11.36748 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.003959 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.838849 B = 7071.498807 C = 7379.479958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.253 4.253 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.278 1.278 9 H -0.291 1.291 10 H -0.291 1.291 11 C 0.180 3.820 12 C -0.136 4.136 13 C -0.106 4.106 14 C 0.082 3.918 15 C 0.228 3.772 16 N -0.436 5.436 17 C -0.073 4.073 18 C -0.108 4.108 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.108 4.108 23 C -0.098 4.098 24 C -0.138 4.138 25 H 0.026 0.974 26 H 0.041 0.959 27 H -0.004 1.004 28 H 0.251 0.749 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 -18.378 -2.329 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.382 4.382 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.071 3.929 12 C -0.176 4.176 13 C -0.145 4.145 14 C 0.079 3.921 15 C -0.090 4.090 16 N -0.111 5.111 17 C -0.074 4.074 18 C -0.126 4.126 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.137 4.137 24 C -0.178 4.178 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.315 -18.516 -2.268 20.037 hybrid contribution 0.603 1.000 -0.067 1.169 sum 7.918 -17.516 -2.335 19.364 Atomic orbital electron populations 1.20721 0.82861 0.95376 0.99029 1.43943 1.01730 1.00260 1.85810 1.19275 0.98297 0.85553 1.35096 0.91334 1.25035 0.97808 0.98487 0.98415 1.70087 1.18610 1.26956 1.39623 0.86208 0.78608 0.84488 0.77381 1.20325 1.21747 1.21810 1.20327 0.96116 0.85985 0.90464 1.22211 0.99593 0.94139 1.01642 1.21775 1.01892 0.96537 0.94301 1.17246 0.81494 0.93219 1.00171 1.28788 0.94511 0.92585 0.93120 1.81210 1.12223 1.09181 1.08464 1.19567 0.97797 0.94531 0.95520 1.21050 0.99462 0.93956 0.98151 1.21111 0.97076 0.96851 0.98745 1.21181 0.98696 0.99463 0.94572 1.21164 0.99755 0.94163 0.98693 1.21252 0.96040 0.97200 0.98057 1.21672 1.01923 0.96128 0.93974 1.22194 0.99783 0.94515 1.01305 0.95545 0.93987 0.98570 0.93894 0.91584 0.92689 0.90977 0.91446 0.89616 0.86101 0.86064 0.86198 0.85877 0.84814 0.89729 0.91613 0.92476 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 8.00 59.85 0.48 4.64 16 2 N -0.60 -14.67 2.81 -173.49 -0.49 -15.16 16 3 C -0.25 -6.82 9.59 -15.06 -0.14 -6.96 16 4 H 0.07 1.79 7.82 -52.48 -0.41 1.38 16 5 C 0.00 0.02 5.12 -17.43 -0.09 -0.07 16 6 N -0.91 -26.61 10.65 55.49 0.59 -26.02 16 7 Si 0.90 21.75 29.57 -169.99 -5.03 16.72 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 C 0.18 3.45 2.59 -67.93 -0.18 3.27 16 12 C -0.14 -2.37 4.98 -26.73 -0.13 -2.50 16 13 C -0.11 -1.35 3.37 -26.73 -0.09 -1.44 16 14 C 0.08 1.03 0.56 -158.44 -0.09 0.95 16 15 C 0.23 3.53 10.98 -20.72 -0.23 3.30 16 16 N -0.44 -7.79 18.54 42.20 0.78 -7.01 16 17 C -0.07 -0.80 4.74 -104.62 -0.50 -1.30 16 18 C -0.11 -1.13 8.81 -39.58 -0.35 -1.47 16 19 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 20 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 21 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 22 C -0.11 -1.05 8.98 -39.59 -0.36 -1.40 16 23 C -0.10 -1.22 4.52 -26.70 -0.12 -1.35 16 24 C -0.14 -2.29 4.97 -26.71 -0.13 -2.42 16 25 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 26 H 0.04 1.14 7.22 -51.93 -0.38 0.77 16 27 H 0.00 -0.10 6.43 -51.93 -0.33 -0.43 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16 30 H 0.05 1.07 6.76 -51.93 -0.35 0.71 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.07 0.79 7.51 -51.93 -0.39 0.40 16 33 H 0.09 0.93 7.51 -51.93 -0.39 0.54 16 34 H 0.12 1.21 7.57 -52.49 -0.40 0.81 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.13 1.13 5.90 -52.48 -0.31 0.82 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.74 7.39 -51.93 -0.38 0.36 16 41 H 0.06 1.04 5.75 -51.93 -0.30 0.75 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -31.19 332.27 -8.35 -39.55 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.10 Total: -2.02 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.11 Total: -11.07 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.89 Total: -48.18 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.19 -8.35 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170388831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.280 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds