Wall clock time and date at job start Tue Mar 31 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 119.99658 * 2 1 4 4 H 1.08005 * 120.00409 * 203.06804 * 3 2 1 5 5 C 1.38815 * 120.00442 * 23.06920 * 3 2 1 6 6 N 1.31625 * 119.99687 * 11.66310 * 5 3 2 7 7 Si 1.86796 * 120.00680 * 191.66647 * 5 3 2 8 8 H 1.48509 * 109.46576 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47266 * 119.99394 * 7 5 3 10 10 H 1.48494 * 109.47436 * 240.00203 * 7 5 3 11 11 C 1.46496 * 120.00266 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46974 * 299.99582 * 11 2 1 13 13 C 1.53000 * 109.47408 * 180.02562 * 12 11 2 14 14 C 1.52995 * 109.47198 * 300.00444 * 13 12 11 15 15 C 1.47207 * 109.46977 * 299.99442 * 14 13 12 16 16 N 5.01153 * 68.88127 * 180.02562 * 2 1 3 17 17 C 1.50702 * 109.47242 * 179.97438 * 14 13 12 18 18 C 1.38233 * 119.99789 * 179.97438 * 17 14 13 19 19 C 1.38234 * 119.99973 * 179.97438 * 18 17 14 20 20 C 1.38241 * 119.99647 * 0.27578 * 19 18 17 21 21 C 1.38232 * 119.99846 * 359.53489 * 20 19 18 22 22 C 1.38228 * 120.00275 * 0.42191 * 21 20 19 23 23 C 1.53003 * 109.47303 * 59.99492 * 14 13 12 24 24 C 1.52994 * 109.47396 * 59.99505 * 11 2 1 25 25 H 1.08999 * 109.46906 * 273.86212 * 1 2 3 26 26 H 1.08997 * 109.47087 * 33.86516 * 1 2 3 27 27 H 1.08997 * 109.46531 * 153.86934 * 1 2 3 28 28 H 0.96995 * 119.99840 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.47219 * 179.97438 * 11 2 1 30 30 H 1.09003 * 109.47027 * 60.00030 * 12 11 2 31 31 H 1.09004 * 109.46936 * 300.00065 * 12 11 2 32 32 H 1.08995 * 109.47102 * 179.97438 * 13 12 11 33 33 H 1.09003 * 109.47008 * 60.00012 * 13 12 11 34 34 H 1.07998 * 120.00165 * 0.02562 * 18 17 14 35 35 H 1.07999 * 120.00419 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.99723 * 179.72730 * 20 19 18 37 37 H 1.08004 * 119.99691 * 180.20159 * 21 20 19 38 38 H 1.08004 * 120.00397 * 179.78558 * 22 21 20 39 39 H 1.08995 * 109.46713 * 60.00265 * 23 14 13 40 40 H 1.09004 * 109.46936 * 180.02562 * 23 14 13 41 41 H 1.09003 * 109.47120 * 300.00286 * 24 11 2 42 42 H 1.08995 * 109.47256 * 60.00306 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1649 1.2235 -0.3665 5 6 1.5388 2.3400 0.4710 6 7 0.3993 2.2615 1.1251 7 14 2.3339 4.0045 0.1767 8 1 3.6005 3.8217 -0.5769 9 1 1.4101 4.8626 -0.6079 10 1 2.6237 4.6524 1.4811 11 6 2.1976 -1.2687 -0.0006 12 6 1.8280 -2.0715 1.2484 13 6 2.5935 -3.3962 1.2482 14 6 2.2246 -4.1983 -0.0013 15 6 0.7774 -4.4679 -0.0017 16 7 -0.3406 -4.6749 -0.0021 17 6 2.9791 -5.5028 -0.0018 18 6 2.8065 -6.4006 -1.0386 19 6 3.4990 -7.5970 -1.0394 20 6 4.3596 -7.8981 -0.0003 21 6 4.5351 -6.9986 1.0345 22 6 3.8433 -5.8018 1.0348 23 6 2.5941 -3.3955 -1.2503 24 6 1.8280 -2.0705 -1.2500 25 1 -0.3633 0.0692 1.0253 26 1 -0.3633 0.8533 -0.5726 27 1 -0.3632 -0.9226 -0.4526 28 1 -0.0273 3.0679 1.4546 29 1 3.2692 -1.0694 -0.0009 30 1 0.7564 -2.2707 1.2484 31 1 2.0914 -1.5002 2.1386 32 1 2.3306 -3.9679 2.1382 33 1 3.6651 -3.1966 1.2485 34 1 2.1314 -6.1669 -1.8486 35 1 3.3645 -8.2983 -1.8497 36 1 4.8973 -8.8348 0.0013 37 1 5.2099 -7.2324 1.8446 38 1 3.9778 -5.1005 1.8451 39 1 3.6656 -3.1959 -1.2499 40 1 2.3308 -3.9668 -2.1405 41 1 0.7563 -2.2697 -1.2501 42 1 2.0912 -1.4986 -2.1398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170388831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:04 Heat of formation + Delta-G solvation = 49.758173 kcal Electronic energy + Delta-G solvation = -22370.549003 eV Core-core repulsion = 19315.036911 eV Total energy + Delta-G solvation = -3055.512092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46280 -39.26303 -37.53192 -36.21175 -33.88834 -32.31587 -31.94904 -31.28793 -29.13814 -28.03564 -25.53247 -24.39612 -23.45277 -22.75368 -22.19381 -20.78656 -18.79601 -18.08360 -17.57369 -17.01109 -16.40319 -15.97917 -15.75361 -15.36943 -15.12981 -14.89592 -14.64309 -14.40809 -14.19295 -14.03294 -13.86497 -13.72703 -13.41466 -13.06364 -13.05482 -12.86096 -12.67981 -12.59157 -12.41524 -12.35202 -12.06327 -11.97446 -11.86273 -11.78772 -11.44298 -11.08689 -11.07810 -10.58501 -9.73048 -9.63859 -8.73729 -7.78753 -5.27128 0.43386 0.58736 1.48128 1.49495 1.59844 1.73040 1.77260 2.53320 2.75219 3.13692 3.35312 3.46371 3.68732 3.77133 3.89269 4.15819 4.20808 4.25359 4.33154 4.38158 4.51467 4.53964 4.60153 4.69360 4.75116 4.80959 4.91859 4.94893 5.01805 5.10596 5.13522 5.21489 5.24252 5.25880 5.27281 5.52629 5.59817 5.65579 5.68893 5.69468 5.71497 5.73551 6.16868 6.37265 6.55326 7.18062 7.91592 8.37923 9.25425 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.003959 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.838849 B = 7071.498807 C = 7379.479958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.612 5.612 3 C -0.255 4.255 4 H 0.080 0.920 5 C -0.059 4.059 6 N -0.945 5.945 7 Si 0.968 3.032 8 H -0.260 1.260 9 H -0.297 1.297 10 H -0.294 1.294 11 C 0.172 3.828 12 C -0.127 4.127 13 C -0.097 4.097 14 C 0.089 3.911 15 C 0.243 3.757 16 N -0.487 5.487 17 C -0.085 4.085 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.090 4.090 24 C -0.128 4.128 25 H -0.005 1.005 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.245 0.755 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.032 0.968 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 -20.354 -2.753 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.334 5.334 3 C -0.386 4.386 4 H 0.097 0.903 5 C -0.253 4.253 6 N -0.592 5.592 7 Si 0.797 3.203 8 H -0.184 1.184 9 H -0.225 1.225 10 H -0.221 1.221 11 C 0.066 3.934 12 C -0.167 4.167 13 C -0.136 4.136 14 C 0.085 3.915 15 C -0.074 4.074 16 N -0.162 5.162 17 C -0.086 4.086 18 C -0.140 4.140 19 C -0.144 4.144 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.168 4.168 25 H 0.014 0.986 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.520 -20.533 -2.707 23.229 hybrid contribution -0.350 1.509 0.053 1.550 sum 10.170 -19.024 -2.654 21.734 Atomic orbital electron populations 1.20308 0.84000 0.94761 0.96695 1.44200 1.01419 1.01868 1.85916 1.19697 0.98599 0.86547 1.33716 0.90257 1.25834 0.98567 1.02030 0.98888 1.70269 1.20311 1.27288 1.41346 0.85171 0.78147 0.80021 0.76940 1.18432 1.22450 1.22120 1.20631 0.96055 0.84346 0.92410 1.22010 0.98555 0.96368 0.99722 1.21758 1.02851 0.93742 0.95210 1.17341 0.79730 0.94500 0.99902 1.29491 0.95151 0.91086 0.91669 1.81211 1.13902 1.11052 1.10079 1.19377 0.98728 0.93778 0.96757 1.21152 0.99984 0.94681 0.98200 1.21373 0.96826 0.96604 0.99599 1.21543 0.98085 1.00289 0.93951 1.21488 0.99618 0.93580 0.99325 1.21444 0.95784 0.98046 0.97864 1.21661 1.02716 0.93698 0.94797 1.22016 0.98894 0.96378 0.99479 0.98626 0.96855 0.96920 0.94610 0.90476 0.95481 0.92963 0.89937 0.86514 0.86391 0.84380 0.83847 0.83572 0.83601 0.87077 0.89951 0.94874 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.93 8.00 127.77 1.02 10.96 16 2 N -0.61 -30.61 2.81 -702.79 -1.98 -32.59 16 3 C -0.26 -13.83 9.59 84.03 0.81 -13.03 16 4 H 0.08 4.05 7.82 -2.91 -0.02 4.03 16 5 C -0.06 -3.32 5.12 84.86 0.43 -2.89 16 6 N -0.94 -57.37 10.65 21.65 0.23 -57.14 16 7 Si 0.97 45.17 29.57 68.60 2.03 47.19 16 8 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 9 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 C 0.17 6.49 2.59 44.99 0.12 6.61 16 12 C -0.13 -4.39 4.98 30.60 0.15 -4.24 16 13 C -0.10 -2.24 3.37 30.59 0.10 -2.14 16 14 C 0.09 2.04 0.56 -54.73 -0.03 2.01 16 15 C 0.24 7.41 10.98 89.43 0.98 8.40 16 16 N -0.49 -17.68 18.54 20.02 0.37 -17.31 16 17 C -0.09 -1.63 4.74 -19.87 -0.09 -1.72 16 18 C -0.12 -2.24 8.81 22.27 0.20 -2.04 16 19 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 20 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 21 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 22 C -0.11 -1.79 8.98 22.27 0.20 -1.59 16 23 C -0.09 -2.02 4.52 30.61 0.14 -1.88 16 24 C -0.13 -4.12 4.97 30.61 0.15 -3.97 16 25 H 0.00 -0.27 7.42 -2.39 -0.02 -0.28 16 26 H 0.01 0.74 7.22 -2.39 -0.02 0.72 16 27 H 0.01 0.60 6.43 -2.39 -0.02 0.59 16 28 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.08 2.74 7.86 -2.39 -0.02 2.73 16 30 H 0.03 1.07 6.76 -2.39 -0.02 1.05 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 1.71 7.51 -2.39 -0.02 1.70 16 33 H 0.12 2.05 7.51 -2.39 -0.02 2.04 16 34 H 0.12 2.15 7.57 -2.91 -0.02 2.12 16 35 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.15 1.85 5.90 -2.91 -0.02 1.84 16 39 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 1.64 7.39 -2.39 -0.02 1.62 16 41 H 0.03 1.21 5.75 -2.39 -0.01 1.20 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -70.26 332.27 6.51 -63.74 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.01 Total: 5.99 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.85 Total: -9.89 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -1.37 Total: -107.04 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.26 6.51 -63.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170388831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.503 kcal (2) G-P(sol) polarization free energy of solvation -70.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds