Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.50703 * 109.47376 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99813 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47121 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46977 * 120.00444 * 10 8 6 13 13 H 1.48496 * 109.47124 * 240.00145 * 10 8 6 14 14 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 15 15 C 1.46897 * 111.00355 * 84.99974 * 14 2 1 16 16 C 1.50696 * 109.47624 * 179.97438 * 15 14 2 17 17 C 1.36110 * 120.12741 * 259.73040 * 16 15 14 18 18 C 1.39314 * 121.06373 * 179.75916 * 17 16 15 19 19 C 1.36178 * 120.87069 * 0.49638 * 18 17 16 20 20 C 1.40392 * 119.61395 * 359.76882 * 19 18 17 21 21 C 1.40779 * 121.38991 * 179.97438 * 20 19 18 22 22 C 1.36568 * 118.15078 * 180.02562 * 21 20 19 23 23 C 1.39332 * 119.94618 * 0.02562 * 22 21 20 24 24 N 1.31088 * 121.74681 * 0.02562 * 23 22 21 25 25 C 1.33683 * 121.32069 * 359.95982 * 24 23 22 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 30 30 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 31 31 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 32 32 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 33 33 H 0.96995 * 119.99701 * 179.97438 * 9 8 6 34 34 H 1.00901 * 110.99869 * 321.04664 * 14 2 1 35 35 H 1.09006 * 109.46948 * 300.00869 * 15 14 2 36 36 H 1.09006 * 109.47033 * 59.99701 * 15 14 2 37 37 H 1.07994 * 119.46668 * 359.97047 * 17 16 15 38 38 H 1.08001 * 119.56548 * 180.28328 * 18 17 16 39 39 H 1.07999 * 120.19273 * 179.79428 * 19 18 17 40 40 H 1.07997 * 120.92083 * 359.97438 * 21 20 19 41 41 H 1.08004 * 120.02640 * 179.97438 * 22 21 20 42 42 H 1.07996 * 119.13104 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0672 -1.3242 2.5440 7 1 3.3687 -1.8053 3.2127 8 6 5.4185 -1.3614 2.8152 9 7 6.2690 -0.7760 2.0007 10 14 6.0410 -2.2420 4.3405 11 1 4.8910 -2.8133 5.0862 12 1 6.9626 -3.3351 3.9393 13 1 6.7645 -1.2780 5.2079 14 7 2.0198 -0.6925 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5887 -0.5215 -3.5557 17 6 3.8905 -0.4034 -3.9351 18 6 4.3803 -1.0862 -5.0462 19 6 3.5659 -1.8844 -5.7907 20 6 2.2160 -2.0255 -5.4318 21 6 1.3410 -2.8404 -6.1749 22 6 0.0408 -2.9295 -5.7669 23 6 -0.3856 -2.2240 -4.6436 24 7 0.4316 -1.4653 -3.9544 25 6 1.7164 -1.3347 -4.2998 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4261 32 1 3.8531 0.4370 1.3574 33 1 7.2196 -0.8019 2.1917 34 1 1.4496 -1.4979 -1.4100 35 1 1.0872 0.6163 -2.5525 36 1 2.7590 1.0462 -2.1182 37 1 4.5553 0.2273 -3.3635 38 1 5.4187 -0.9784 -5.3229 39 1 3.9564 -2.4061 -6.6519 40 1 1.6882 -3.3794 -7.0440 41 1 -0.6566 -3.5456 -6.3150 42 1 -1.4168 -2.3037 -4.3328 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = 17.318844 kcal Electronic energy + Delta-G solvation = -21568.931489 eV Core-core repulsion = 18512.012722 eV Total energy + Delta-G solvation = -3056.918767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77900 -38.78161 -37.86212 -35.56733 -34.67491 -32.91762 -31.44054 -31.32526 -29.85873 -27.04842 -26.00221 -24.92127 -24.45863 -23.14854 -21.86529 -21.26730 -19.12975 -18.37360 -17.88754 -17.61537 -16.64405 -16.49584 -16.03653 -15.64289 -15.30529 -15.14097 -14.89202 -14.54170 -14.41299 -14.10947 -13.86237 -13.74548 -13.61225 -13.17298 -12.96468 -12.85268 -12.79940 -12.60374 -12.36977 -12.26384 -12.12468 -11.80443 -11.54542 -11.36131 -11.21163 -10.95661 -10.48522 -10.35829 -9.68197 -9.23210 -9.00277 -8.13110 -6.23566 -0.49789 -0.08092 1.06291 1.39359 1.40294 1.53500 2.04947 2.44009 3.09470 3.18838 3.41014 3.50625 3.68138 3.84248 3.94527 4.05574 4.10459 4.17102 4.29650 4.33135 4.45651 4.49276 4.56669 4.60601 4.68539 4.77434 4.87651 4.98365 5.05407 5.07891 5.10163 5.18280 5.19678 5.27711 5.46639 5.48524 5.58948 5.59618 5.65179 5.88686 5.97868 6.03067 6.26847 6.35391 6.57825 6.95738 7.02775 7.44212 8.98542 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.003873 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.297337 B = 7227.332917 C = 7998.849557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 H 0.062 0.938 4 C -0.086 4.086 5 C 0.040 3.960 6 C -0.543 4.543 7 H 0.054 0.946 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.277 1.277 14 N -0.679 5.679 15 C 0.117 3.883 16 C -0.078 4.078 17 C -0.098 4.098 18 C -0.121 4.121 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.058 4.058 22 C -0.175 4.175 23 C 0.120 3.880 24 N -0.503 5.503 25 C 0.109 3.891 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.001 0.999 32 H -0.022 1.022 33 H 0.261 0.739 34 H 0.338 0.662 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.314 -3.018 -20.535 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.020 4.020 3 H 0.080 0.920 4 C -0.124 4.124 5 C 0.003 3.997 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.203 1.203 14 N -0.310 5.310 15 C -0.012 4.012 16 C -0.079 4.079 17 C -0.119 4.119 18 C -0.139 4.139 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.084 4.084 22 C -0.194 4.194 23 C -0.052 4.052 24 N -0.212 5.212 25 C -0.012 4.012 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.020 0.980 32 H -0.003 1.003 33 H 0.070 0.930 34 H 0.156 0.844 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.188 0.812 41 H 0.190 0.810 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.686 -2.375 -19.607 22.949 hybrid contribution 0.137 -0.462 0.085 0.489 sum -11.550 -2.837 -19.522 22.859 Atomic orbital electron populations 1.22322 0.95536 1.02110 1.02188 1.21546 0.93326 0.96985 0.90116 0.92007 1.21445 0.96754 0.98776 0.95448 1.18811 0.91991 0.93920 0.95016 1.21832 0.92578 1.34311 1.09359 0.92747 1.25958 0.97338 0.96510 1.00051 1.70132 1.02517 1.45647 1.38960 0.85446 0.78369 0.78307 0.79190 1.18742 1.20437 1.20251 1.60546 1.57940 1.09511 1.02976 1.20610 0.99137 0.93970 0.87468 1.19573 0.93734 0.98314 0.96298 1.21051 0.94468 0.99358 0.97024 1.21210 1.01453 0.96629 0.94568 1.21347 0.91516 0.98213 1.00469 1.19171 0.96531 0.99898 0.96976 1.21875 0.93127 0.94687 0.98671 1.22250 0.97412 1.01389 0.98351 1.23547 1.00140 0.90370 0.91155 1.67980 1.03232 1.18932 1.31047 1.18878 0.91089 0.97066 0.94148 0.92527 0.91429 0.92353 0.92928 0.93924 0.98018 1.00323 0.93031 0.84386 0.93827 0.91640 0.85791 0.83207 0.81954 0.81172 0.81015 0.80188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 9.16 71.98 0.66 -4.13 16 2 C 0.09 3.35 2.59 44.92 0.12 3.47 16 3 H 0.06 2.39 7.80 -2.39 -0.02 2.37 16 4 C -0.09 -3.87 4.83 30.59 0.15 -3.72 16 5 C 0.04 2.26 4.86 29.85 0.15 2.41 16 6 C -0.54 -32.92 9.11 25.60 0.23 -32.69 16 7 H 0.05 3.18 7.74 -2.91 -0.02 3.16 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 9 N -0.93 -59.41 13.29 21.45 0.28 -59.13 16 10 Si 0.96 46.39 29.54 68.60 2.03 48.42 16 11 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 N -0.68 -25.70 5.69 -495.58 -2.82 -28.53 16 15 C 0.12 3.93 5.29 85.56 0.45 4.39 16 16 C -0.08 -2.49 5.40 -19.79 -0.11 -2.60 16 17 C -0.10 -2.92 9.56 22.03 0.21 -2.71 16 18 C -0.12 -2.82 9.95 22.05 0.22 -2.60 16 19 C -0.10 -1.97 9.78 22.31 0.22 -1.75 16 20 C -0.12 -2.91 5.74 -21.28 -0.12 -3.03 16 21 C -0.06 -0.93 9.90 22.50 0.22 -0.71 16 22 C -0.17 -2.51 10.03 22.14 0.22 -2.29 16 23 C 0.12 2.32 11.15 85.07 0.95 3.27 16 24 N -0.50 -13.79 9.56 -188.64 -1.80 -15.60 16 25 C 0.11 3.19 6.58 40.29 0.27 3.45 16 26 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 1.59 7.45 -2.39 -0.02 1.58 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.00 0.09 7.75 -2.39 -0.02 0.07 16 32 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.34 12.59 8.42 -89.69 -0.76 11.83 16 35 H 0.04 1.41 7.17 -2.38 -0.02 1.39 16 36 H 0.07 2.27 7.88 -2.38 -0.02 2.25 16 37 H 0.12 3.73 8.00 -2.91 -0.02 3.71 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -75.13 350.30 2.22 -72.91 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.24 Total: 20.78 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 4.29 Total: -38.86 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -4.34 Total: -103.25 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -75.13 2.22 -72.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.229 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds