Wall clock time and date at job start Tue Mar 31 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45207 * 109.46844 * 2 1 4 4 C 1.34228 * 116.99759 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99936 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00111 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.47061 * 305.00497 * 6 4 3 8 8 O 1.42895 * 109.47556 * 185.00165 * 6 4 3 9 9 C 1.42903 * 114.00531 * 149.99956 * 8 6 4 10 10 C 1.52989 * 109.47280 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47017 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46971 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46971 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47232 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99855 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00179 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99904 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00047 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46995 * 90.00066 * 18 16 14 20 20 H 1.48501 * 109.47470 * 210.00323 * 18 16 14 21 21 H 1.48503 * 109.47077 * 330.00506 * 18 16 14 22 22 C 1.53003 * 109.47147 * 64.99888 * 6 4 3 23 23 C 1.53001 * 117.51964 * 231.28651 * 22 6 4 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 6 25 25 H 1.09009 * 109.47200 * 299.99890 * 1 2 3 26 26 H 1.08998 * 109.47136 * 59.99957 * 1 2 3 27 27 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47090 * 240.00391 * 2 1 3 29 29 H 1.08994 * 109.47273 * 119.99536 * 2 1 3 30 30 H 1.08997 * 109.46837 * 300.00261 * 9 8 6 31 31 H 1.09003 * 109.46795 * 59.99691 * 9 8 6 32 32 H 1.09006 * 109.47410 * 299.99869 * 10 9 8 33 33 H 1.09003 * 109.47610 * 60.00005 * 10 9 8 34 34 H 1.09000 * 109.47227 * 299.99541 * 11 10 9 35 35 H 1.08999 * 109.47212 * 60.00276 * 11 10 9 36 36 H 1.08997 * 109.47316 * 299.99824 * 12 11 10 37 37 H 1.09003 * 109.47586 * 60.00032 * 12 11 10 38 38 H 1.08997 * 109.46957 * 300.00044 * 13 12 11 39 39 H 1.08998 * 109.47362 * 59.99802 * 13 12 11 40 40 H 0.97008 * 119.99587 * 179.97438 * 17 16 14 41 41 H 1.09002 * 115.54973 * 85.58434 * 22 6 4 42 42 H 1.09001 * 117.49733 * 214.97413 * 23 22 6 43 43 H 1.08995 * 117.49577 * 359.97438 * 23 22 6 44 44 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 45 45 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9375 -0.0012 7 1 3.5145 3.4983 -0.8430 8 8 5.3429 2.8647 -0.1191 9 6 5.9291 3.9851 -0.7848 10 6 7.4463 3.8006 -0.8541 11 6 8.0739 5.0005 -1.5662 12 6 9.5913 4.8163 -1.6349 13 6 10.2190 6.0165 -2.3465 14 6 11.7136 5.8355 -2.4137 15 1 12.1701 4.9528 -1.9907 16 6 12.4982 6.7971 -3.0141 17 7 13.8025 6.6388 -3.0731 18 14 11.7087 8.3240 -3.7451 19 1 11.6338 9.3863 -2.7101 20 1 12.5250 8.8041 -4.8891 21 1 10.3396 7.9956 -4.2173 22 6 3.5527 3.6422 1.3061 23 6 2.9121 5.0280 1.2062 24 6 2.0655 3.8218 1.6176 25 1 -0.3634 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 5.5260 4.0593 -1.7948 31 1 5.6983 4.8967 -0.2336 32 1 7.8498 3.7262 0.1558 33 1 7.6767 2.8890 -1.4055 34 1 7.6706 5.0754 -2.5761 35 1 7.8436 5.9118 -1.0144 36 1 9.9943 4.7417 -0.6250 37 1 9.8221 3.9049 -2.1865 38 1 9.8160 6.0916 -3.3565 39 1 9.9882 6.9277 -1.7947 40 1 14.3545 7.3152 -3.4960 41 1 4.2238 3.4573 2.1449 42 1 3.1618 5.7548 1.9791 43 1 2.7530 5.4381 0.2089 44 1 1.3493 3.4382 0.8909 45 1 1.7583 3.7550 2.6613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224375815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:02 Heat of formation + Delta-G solvation = -152.825365 kcal Electronic energy + Delta-G solvation = -21927.861195 eV Core-core repulsion = 18523.962750 eV Total energy + Delta-G solvation = -3403.898444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.182 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.78994 -39.63468 -37.84125 -37.59900 -36.68550 -34.77142 -32.77346 -32.44700 -29.77420 -28.06247 -24.88255 -24.48164 -23.24316 -22.87819 -22.30753 -21.81116 -21.47282 -19.00780 -18.85524 -17.89618 -17.82396 -17.40250 -17.02553 -16.31443 -16.20013 -15.78299 -15.23428 -15.11589 -14.78054 -14.75336 -14.05717 -13.87906 -13.67273 -13.50819 -13.46299 -13.06349 -12.90297 -12.70145 -12.57191 -12.53143 -12.32947 -12.02800 -11.98955 -11.83430 -11.71194 -11.57879 -11.43965 -11.34003 -11.29952 -11.19286 -10.97999 -10.75429 -10.62314 -8.28630 -6.33266 1.00362 1.25278 1.36799 1.39609 1.52015 2.37838 2.56055 2.96539 3.06495 3.52485 3.63297 3.76752 3.94265 3.99050 4.02690 4.06055 4.08106 4.22721 4.28445 4.33864 4.37788 4.43969 4.51530 4.69704 4.79506 4.84597 4.85060 4.93192 4.93649 4.99985 5.01185 5.11556 5.16945 5.18243 5.27460 5.29291 5.33727 5.38271 5.59893 5.67012 5.69476 6.00800 6.30414 6.64648 6.75369 7.31344 8.88536 Molecular weight = 284.18amu Principal moments of inertia in cm(-1) A = 0.031396 B = 0.002340 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.606569 B =11963.790163 C =12431.334261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.345 6.345 4 C 0.467 3.533 5 O -0.531 6.531 6 C 0.132 3.868 7 H 0.122 0.878 8 O -0.385 6.385 9 C 0.065 3.935 10 C -0.113 4.113 11 C -0.105 4.105 12 C -0.100 4.100 13 C -0.013 4.013 14 C -0.537 4.537 15 H 0.025 0.975 16 C -0.003 4.003 17 N -0.955 5.955 18 Si 0.958 3.042 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.242 1.242 22 C -0.200 4.200 23 C -0.155 4.155 24 C -0.157 4.157 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.266 0.734 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.904 -6.107 7.802 36.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.262 6.262 4 C 0.310 3.690 5 O -0.419 6.419 6 C 0.073 3.927 7 H 0.140 0.860 8 O -0.304 6.304 9 C -0.010 4.010 10 C -0.151 4.151 11 C -0.142 4.142 12 C -0.137 4.137 13 C -0.050 4.050 14 C -0.575 4.575 15 H 0.044 0.956 16 C -0.200 4.200 17 N -0.596 5.596 18 Si 0.781 3.219 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.166 1.166 22 C -0.219 4.219 23 C -0.192 4.192 24 C -0.194 4.194 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -34.458 -6.516 7.814 35.929 hybrid contribution 0.878 0.121 -0.315 0.941 sum -33.580 -6.394 7.499 34.997 Atomic orbital electron populations 1.21818 0.89804 1.04413 1.04027 1.23329 0.97349 0.79123 1.02370 1.86489 1.22494 1.33663 1.83531 1.23809 0.81259 0.92246 0.71714 1.90682 1.61428 1.44077 1.45741 1.21076 0.82882 0.88877 0.99851 0.86034 1.87974 1.17684 1.45467 1.79295 1.22775 0.93292 0.88243 0.96733 1.21461 0.93314 0.98929 1.01399 1.21450 0.94028 0.97738 1.00990 1.21357 0.94927 0.97977 0.99482 1.19561 0.93322 0.95797 0.96349 1.21597 0.93013 1.05807 1.37114 0.95625 1.26160 0.95210 1.02411 0.96171 1.70099 1.06115 1.36988 1.46374 0.85540 0.79626 0.78432 0.78318 1.18936 1.21074 1.16563 1.22576 0.99064 1.02643 0.97627 1.23217 1.01620 0.89926 1.04447 1.23126 0.91183 1.01352 1.03754 0.90805 0.90983 0.88417 0.91681 0.91625 0.91508 0.90684 0.91840 0.92388 0.91129 0.90742 0.93721 0.93944 0.95992 0.95962 0.92543 0.87629 0.87372 0.87105 0.87022 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 10.29 71.98 0.74 -0.25 16 2 C 0.05 0.72 6.19 71.98 0.45 1.17 16 3 O -0.34 -5.96 8.40 -51.40 -0.43 -6.39 16 4 C 0.47 10.78 7.23 71.23 0.52 11.29 16 5 O -0.53 -16.75 16.26 28.37 0.46 -16.29 16 6 C 0.13 2.56 2.87 29.85 0.09 2.64 16 7 H 0.12 1.69 7.55 -2.38 -0.02 1.67 16 8 O -0.38 -9.89 9.53 -129.95 -1.24 -11.13 16 9 C 0.07 1.39 5.75 71.98 0.41 1.81 16 10 C -0.11 -3.03 5.58 30.59 0.17 -2.86 16 11 C -0.10 -3.04 5.21 30.60 0.16 -2.88 16 12 C -0.10 -3.97 5.15 30.60 0.16 -3.81 16 13 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 14 C -0.54 -32.17 9.66 25.60 0.25 -31.92 16 15 H 0.03 1.70 7.99 -2.91 -0.02 1.67 16 16 C 0.00 -0.21 5.47 84.65 0.46 0.25 16 17 N -0.95 -61.57 13.96 21.45 0.30 -61.27 16 18 Si 0.96 44.75 27.47 68.60 1.88 46.63 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 22 C -0.20 -3.12 5.45 -10.79 -0.06 -3.18 16 23 C -0.16 -1.60 10.18 30.59 0.31 -1.29 16 24 C -0.16 -1.71 9.55 30.60 0.29 -1.42 16 25 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 30 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 39 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 40 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.11 0.88 8.05 -2.39 -0.02 0.86 16 44 H 0.11 1.14 6.90 -2.39 -0.02 1.12 16 45 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -75.71 372.76 5.91 -69.80 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.87 Total: 9.60 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 4.06 Total: -30.95 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.30 Total: -61.27 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.21 Total: -33.80 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -75.71 5.91 -69.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.026 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds