Wall clock time and date at job start Tue Mar 31 2020 06:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 H 1.09004 * 109.46687 * 34.99716 * 17 16 14 19 19 C 1.52997 * 109.47193 * 154.99604 * 17 16 14 20 20 C 1.53002 * 109.47232 * 60.00121 * 19 17 16 21 21 C 1.53000 * 109.46556 * 59.99868 * 20 19 17 22 22 H 1.08998 * 109.47443 * 60.00648 * 21 20 19 23 23 C 1.53002 * 109.46556 * 180.02562 * 21 20 19 24 24 O 1.42904 * 109.46949 * 184.99798 * 23 21 20 25 25 C 1.52997 * 109.47457 * 299.99994 * 21 20 19 26 26 C 1.52992 * 109.47142 * 275.00164 * 17 16 14 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 33 33 H 1.00902 * 110.99515 * 183.95384 * 13 11 10 34 34 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 35 35 H 1.09002 * 109.47260 * 180.02562 * 19 17 16 36 36 H 1.09006 * 109.47128 * 299.99913 * 19 17 16 37 37 H 1.08998 * 109.46901 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.46716 * 300.00071 * 20 19 17 39 39 H 1.09000 * 109.47697 * 304.99950 * 23 21 20 40 40 H 1.08997 * 109.47449 * 65.00374 * 23 21 20 41 41 H 0.96703 * 113.99779 * 179.97438 * 24 23 21 42 42 H 1.08998 * 109.47236 * 180.02562 * 25 21 20 43 43 H 1.09010 * 109.47066 * 300.00467 * 25 21 20 44 44 H 1.08998 * 109.47646 * 59.99312 * 26 17 16 45 45 H 1.08998 * 109.47223 * 180.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 1 4.5391 -7.6044 0.5654 19 6 4.7725 -7.3682 2.6939 20 6 3.8810 -7.3208 3.9365 21 6 3.1102 -8.6365 4.0615 22 1 3.8147 -9.4633 4.1512 23 6 2.2183 -8.5888 5.3038 24 8 1.5872 -9.8579 5.4860 25 6 2.2418 -8.8389 2.8183 26 6 3.1332 -8.8863 1.5757 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 1.3488 -5.1023 -2.0514 33 1 0.1643 -5.9545 -1.2535 34 1 2.6917 -5.9607 2.1187 35 1 5.4774 -8.1948 2.7833 36 1 5.3217 -6.4308 2.6047 37 1 4.4998 -7.1770 4.8222 38 1 3.1765 -6.4939 3.8468 39 1 2.8256 -8.3561 6.1785 40 1 1.4568 -7.8196 5.1751 41 1 1.0055 -9.9008 6.2573 42 1 1.6923 -9.7760 2.9076 43 1 1.5371 -8.0120 2.7286 44 1 2.5145 -9.0305 0.6900 45 1 3.8377 -9.7130 1.6658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342830114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:20 Heat of formation + Delta-G solvation = -150.525824 kcal Electronic energy + Delta-G solvation = -23166.793197 eV Core-core repulsion = 19795.287219 eV Total energy + Delta-G solvation = -3371.505978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44459 -39.68100 -37.52127 -36.71598 -34.79900 -34.73816 -31.92628 -31.80951 -31.51394 -28.15237 -26.47309 -25.27342 -23.66009 -22.62269 -22.02226 -21.32696 -20.15736 -18.75192 -18.18200 -18.06084 -17.25553 -16.88531 -16.47214 -16.36992 -15.88908 -15.76600 -15.31436 -15.02662 -14.80777 -14.62350 -14.27352 -13.90196 -13.80401 -13.48417 -13.36816 -13.16998 -13.00644 -12.80075 -12.50609 -12.41484 -12.23788 -12.11257 -11.74476 -11.63169 -11.52400 -11.28872 -11.23165 -11.08434 -10.97214 -10.77959 -10.48105 -10.03432 -9.59977 -8.12951 -6.23228 1.42517 1.43858 1.53903 1.56704 2.23488 2.45571 3.20103 3.33076 3.58517 3.68704 3.74989 3.87748 3.95466 4.08983 4.12343 4.30936 4.33343 4.42948 4.46117 4.52060 4.53407 4.69668 4.75861 4.79085 4.79606 4.94808 5.01917 5.08890 5.13075 5.17262 5.24890 5.27131 5.41506 5.47238 5.57312 5.58657 5.85463 5.99608 6.11090 6.31382 6.47927 6.55925 6.92927 6.95529 7.20267 7.44899 8.98257 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.003471 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.368419 B = 8064.858213 C = 8554.867916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.081 4.081 11 C 0.084 3.916 12 H 0.107 0.893 13 N -0.819 5.819 14 C 0.489 3.511 15 O -0.583 6.583 16 N -0.707 5.707 17 C 0.141 3.859 18 H 0.066 0.934 19 C -0.119 4.119 20 C -0.112 4.112 21 C -0.083 4.083 22 H 0.076 0.924 23 C 0.077 3.923 24 O -0.594 6.594 25 C -0.102 4.102 26 C -0.124 4.124 27 H 0.262 0.738 28 H 0.004 0.996 29 H -0.006 1.006 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.345 0.655 33 H 0.345 0.655 34 H 0.410 0.590 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.395 0.605 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -18.983 12.723 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.119 4.119 11 C -0.031 4.031 12 H 0.125 0.875 13 N -0.348 5.348 14 C 0.274 3.726 15 O -0.464 6.464 16 N -0.360 5.360 17 C 0.036 3.964 18 H 0.084 0.916 19 C -0.156 4.156 20 C -0.150 4.150 21 C -0.102 4.102 22 H 0.095 0.905 23 C -0.001 4.001 24 O -0.403 6.403 25 C -0.140 4.140 26 C -0.162 4.162 27 H 0.070 0.930 28 H 0.022 0.978 29 H 0.013 0.987 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.247 0.753 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.244 0.756 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.373 -18.765 11.714 23.317 hybrid contribution 0.110 0.387 0.331 0.521 sum 7.483 -18.379 12.045 23.213 Atomic orbital electron populations 1.70111 1.07645 1.27487 1.51781 1.25905 0.95697 1.03033 0.94999 0.85535 0.78805 0.78946 0.78261 1.20295 1.20742 1.18672 1.21735 0.93369 0.92715 1.50307 0.92583 1.18824 0.93880 0.91374 0.95707 1.21378 0.97683 0.92070 1.00762 1.21633 0.93790 0.92331 0.95373 0.87500 1.58980 1.27267 1.45208 1.03341 1.22296 0.81913 0.85110 0.83251 1.90626 1.61862 1.55480 1.38418 1.46185 1.45937 1.34480 1.09384 1.21013 0.90299 0.85822 0.99243 0.91605 1.21771 0.97591 1.03855 0.92409 1.21524 0.98633 0.96351 0.98488 1.21138 0.96852 0.98756 0.93432 0.90522 1.22290 0.95432 0.84901 0.97448 1.86428 1.65945 1.34584 1.53310 1.21405 0.97554 1.01478 0.93567 1.21843 0.99290 0.97256 0.97819 0.92954 0.97758 0.98728 0.91346 0.94029 0.84199 0.84183 0.75306 0.88910 0.90627 0.89444 0.91655 0.92129 0.93398 0.75576 0.92419 0.92773 0.94004 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -30.76 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.04 2.04 4.86 29.85 0.15 2.19 16 10 C -0.08 -3.23 4.78 30.59 0.15 -3.09 16 11 C 0.08 2.82 3.15 44.17 0.14 2.95 16 12 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 13 N -0.82 -28.29 8.44 -171.80 -1.45 -29.74 16 14 C 0.49 15.03 7.03 87.66 0.62 15.65 16 15 O -0.58 -21.45 15.91 -3.01 -0.05 -21.50 16 16 N -0.71 -16.51 4.23 -442.55 -1.87 -18.38 16 17 C 0.14 2.90 2.78 44.99 0.13 3.02 16 18 H 0.07 1.65 7.58 -2.38 -0.02 1.63 16 19 C -0.12 -1.68 5.61 30.59 0.17 -1.51 16 20 C -0.11 -1.37 5.03 30.60 0.15 -1.22 16 21 C -0.08 -1.18 2.43 -10.79 -0.03 -1.21 16 22 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 23 C 0.08 0.99 6.43 71.98 0.46 1.45 16 24 O -0.59 -8.86 13.19 -148.98 -1.97 -10.82 16 25 C -0.10 -1.87 4.94 30.59 0.15 -1.72 16 26 C -0.12 -2.48 5.60 30.59 0.17 -2.31 16 27 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.00 0.23 7.75 -2.39 -0.02 0.21 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.34 12.21 8.58 -89.69 -0.77 11.44 16 33 H 0.35 10.35 9.06 -89.69 -0.81 9.53 16 34 H 0.41 8.08 6.87 -92.71 -0.64 7.45 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.08 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.83 6.51 -2.39 -0.02 0.81 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.39 2.50 9.12 -74.06 -0.68 1.83 16 42 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 43 H 0.05 1.07 7.60 -2.38 -0.02 1.05 16 44 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -71.74 357.78 -1.96 -73.71 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -1.89 Total: 32.59 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 2.95 Total: -15.77 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -3.04 Total: -104.48 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -2.01 Total: -32.32 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -71.74 -1.96 -73.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342830114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.820 kcal (2) G-P(sol) polarization free energy of solvation -71.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds