Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99631 * 2 1 4 4 H 1.08997 * 110.05353 * 28.58525 * 3 2 1 5 5 C 1.54369 * 110.04738 * 267.10868 * 3 2 1 6 6 C 1.54888 * 104.19821 * 217.09213 * 5 3 2 7 7 C 1.54881 * 102.74769 * 37.96856 * 6 5 3 8 8 C 1.53870 * 110.02721 * 150.00046 * 3 2 1 9 9 H 1.09010 * 110.03197 * 238.61738 * 8 3 2 10 10 C 1.50696 * 110.03904 * 359.97438 * 8 3 2 11 11 O 1.20823 * 120.00070 * 83.46483 * 10 8 3 12 12 O 1.34228 * 120.00463 * 263.46866 * 10 8 3 13 13 C 1.45196 * 117.00506 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47556 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47388 * 59.99790 * 14 13 12 16 16 C 1.53003 * 109.47006 * 300.00199 * 14 13 12 17 17 C 1.52997 * 109.47371 * 180.02562 * 14 13 12 18 18 C 1.50701 * 109.47159 * 179.97438 * 17 14 13 19 19 H 1.08002 * 119.99804 * 359.97438 * 18 17 14 20 20 C 1.37872 * 120.00274 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99762 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00312 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47026 * 60.00050 * 22 20 18 24 24 H 1.48507 * 109.47169 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47037 * 299.99732 * 22 20 18 26 26 H 1.09000 * 109.46627 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47375 * 299.99599 * 1 2 3 28 28 H 1.09006 * 109.47306 * 60.00366 * 1 2 3 29 29 H 1.09001 * 110.46163 * 98.42535 * 5 3 2 30 30 H 1.09002 * 110.62365 * 335.83807 * 5 3 2 31 31 H 1.09011 * 110.75117 * 279.65741 * 6 5 3 32 32 H 1.08998 * 110.75611 * 156.28992 * 6 5 3 33 33 H 1.09004 * 110.48894 * 203.37667 * 7 6 5 34 34 H 1.09000 * 110.60134 * 80.79244 * 7 6 5 35 35 H 1.09002 * 109.46824 * 59.99978 * 13 12 10 36 36 H 1.09003 * 109.47300 * 299.99985 * 13 12 10 37 37 H 1.09002 * 109.46876 * 300.00637 * 15 14 13 38 38 H 1.08996 * 109.47443 * 180.02562 * 15 14 13 39 39 H 1.08996 * 109.46479 * 59.99775 * 15 14 13 40 40 H 1.08996 * 109.47132 * 179.97438 * 16 14 13 41 41 H 1.09002 * 109.46991 * 299.99980 * 16 14 13 42 42 H 1.09002 * 109.47394 * 59.99923 * 16 14 13 43 43 H 1.08999 * 109.46629 * 299.99579 * 17 14 13 44 44 H 1.08997 * 109.47261 * 60.00169 * 17 14 13 45 45 H 0.97000 * 120.00243 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3408 2.0126 0.4899 5 6 2.2922 1.7593 -1.4483 6 6 3.6265 2.5394 -1.3490 7 6 4.4272 1.7162 -0.3097 8 6 3.3683 1.2778 0.7228 9 1 3.3577 1.9710 1.5641 10 6 3.6664 -0.1173 1.2084 11 8 4.1574 -0.9263 0.4572 12 8 3.3864 -0.4612 2.4752 13 6 3.6997 -1.8219 2.8736 14 6 3.3129 -2.0261 4.3397 15 6 1.8130 -1.7771 4.5109 16 6 4.0957 -1.0453 5.2150 17 6 3.6436 -3.4597 4.7596 18 6 3.2632 -3.6605 6.2038 19 1 2.8293 -2.8469 6.7661 20 6 3.4690 -4.8829 6.8074 21 7 3.9978 -5.8735 6.1228 22 14 2.9967 -5.1322 8.5974 23 1 1.5410 -4.8907 8.7635 24 1 3.3179 -6.5236 9.0050 25 1 3.7566 -4.1802 9.4470 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.4949 2.4110 -1.8055 30 1 2.4025 0.8971 -2.1061 31 1 3.4549 3.5539 -0.9889 32 1 4.1395 2.5513 -2.3106 33 1 5.1882 2.3365 0.1640 34 1 4.8846 0.8458 -0.7800 35 1 4.7682 -1.9993 2.7512 36 1 3.1416 -2.5206 2.2503 37 1 1.5778 -0.7557 4.2118 38 1 1.5375 -1.9222 5.5554 39 1 1.2553 -2.4758 3.8872 40 1 3.8198 -1.1905 6.2594 41 1 5.1643 -1.2226 5.0931 42 1 3.8605 -0.0238 4.9161 43 1 3.0862 -4.1586 4.1360 44 1 4.7122 -3.6366 4.6378 45 1 4.1430 -6.7335 6.5475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344882963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = -161.632294 kcal Electronic energy + Delta-G solvation = -23643.062405 eV Core-core repulsion = 20238.782064 eV Total energy + Delta-G solvation = -3404.280341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.182 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52911 -38.78806 -37.04133 -35.99003 -35.15231 -32.29863 -29.93212 -28.52009 -27.21221 -26.44054 -26.35125 -26.07077 -23.29041 -22.03523 -21.12678 -19.65924 -18.17331 -17.81002 -16.61613 -16.56038 -16.16099 -15.71627 -15.26353 -15.06524 -14.52853 -14.47087 -14.00083 -13.51371 -13.46703 -12.97295 -12.76053 -12.32359 -12.20958 -12.02215 -11.81882 -11.70071 -11.58263 -11.38208 -11.18132 -11.03861 -10.92115 -10.88067 -10.82350 -10.54412 -10.33136 -10.19974 -10.13960 -10.01969 -9.77369 -9.64853 -9.14855 -8.90433 -8.33272 -5.97496 -3.98595 2.57302 3.04408 3.34593 3.39361 3.41323 3.58147 4.18966 4.27948 4.47397 4.69033 4.90048 5.06884 5.12656 5.13645 5.22071 5.23672 5.29563 5.36885 5.38033 5.57045 5.60516 5.61724 5.62922 5.70418 5.72293 5.88351 5.91005 6.09280 6.15767 6.28247 6.45560 6.57201 6.72620 6.76244 6.97806 7.03961 7.16109 7.17123 7.20121 7.65510 7.78177 8.01085 8.20257 8.43977 9.05647 9.64146 11.14198 Molecular weight = 284.18amu Principal moments of inertia in cm(-1) A = 0.031943 B = 0.003520 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.343291 B = 7951.666135 C = 8226.113760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.097 3.903 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.089 4.089 9 H 0.108 0.892 10 C 0.479 3.521 11 O -0.508 6.508 12 O -0.351 6.351 13 C 0.082 3.918 14 C -0.058 4.058 15 C -0.123 4.123 16 C -0.125 4.125 17 C 0.035 3.965 18 C -0.509 4.509 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 18.370 -13.456 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C 0.039 3.961 4 H 0.094 0.906 5 C -0.184 4.184 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.108 4.108 9 H 0.127 0.873 10 C 0.321 3.679 11 O -0.396 6.396 12 O -0.267 6.267 13 C 0.008 3.992 14 C -0.059 4.059 15 C -0.180 4.180 16 C -0.182 4.182 17 C -0.002 4.002 18 C -0.548 4.548 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.095 17.724 -13.623 22.726 hybrid contribution -0.413 -0.270 0.960 1.080 sum -4.508 17.454 -12.662 22.029 Atomic orbital electron populations 1.22802 0.80715 1.03159 0.99757 1.88053 1.19992 1.26571 1.94853 1.22741 0.92536 0.85589 0.95250 0.90599 1.22928 0.97885 1.00752 0.96792 1.22399 0.95404 0.98454 0.99423 1.22446 0.96469 1.01081 0.95384 1.21837 0.96465 0.92957 0.99555 0.87335 1.22878 0.74446 0.90013 0.80555 1.90601 1.40814 1.52154 1.56027 1.86455 1.76379 1.34806 1.29045 1.23412 1.00296 0.78187 0.97255 1.20795 0.95932 0.99707 0.89428 1.21684 0.95064 0.99071 1.02229 1.21708 0.99033 0.96857 1.00627 1.19115 0.96975 0.87549 0.96560 1.21127 1.40836 0.96855 0.95939 0.92161 1.25013 0.95448 0.96195 0.97858 1.69959 1.44311 1.02783 1.36486 0.86682 0.78945 0.77088 0.85423 1.20282 1.21402 1.20281 0.89445 0.93741 0.94146 0.91135 0.89960 0.91052 0.90683 0.90551 0.89231 0.91959 0.91761 0.94307 0.91747 0.93833 0.91667 0.93822 0.94285 0.96378 0.96398 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 101.05 1.10 1.42 16 2 O -0.38 -5.09 8.82 -36.17 -0.32 -5.41 16 3 C 0.10 1.03 3.36 -25.56 -0.09 0.94 16 4 H 0.08 0.64 7.81 -51.93 -0.41 0.23 16 5 C -0.15 -1.26 6.56 -25.02 -0.16 -1.42 16 6 C -0.12 -0.89 6.91 -24.74 -0.17 -1.06 16 7 C -0.12 -1.15 6.32 -25.08 -0.16 -1.31 16 8 C -0.09 -1.04 3.39 -90.66 -0.31 -1.34 16 9 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 10 C 0.48 7.93 5.67 36.00 0.20 8.14 16 11 O -0.51 -9.88 15.55 -20.65 -0.32 -10.21 16 12 O -0.35 -6.27 8.88 -39.25 -0.35 -6.61 16 13 C 0.08 1.62 4.32 37.16 0.16 1.78 16 14 C -0.06 -1.23 0.61 -154.51 -0.09 -1.32 16 15 C -0.12 -2.43 8.08 37.16 0.30 -2.13 16 16 C -0.13 -2.45 8.08 37.16 0.30 -2.15 16 17 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 18 C -0.51 -13.96 7.65 -34.44 -0.26 -14.22 16 19 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.40 8.10 -51.93 -0.42 -0.02 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.09 6.94 -51.93 -0.36 0.73 16 35 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 36 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 37 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 38 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -32.22 358.03 -7.29 -39.51 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -8.02 Total: -2.63 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 0.61 Total: -10.40 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.99 Total: -22.23 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.22 -7.29 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344882963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.125 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds