Wall clock time and date at job start Tue Mar 31 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47575 * 2 1 4 4 H 1.09005 * 109.51478 * 54.99490 * 3 2 1 5 5 C 1.53292 * 109.51480 * 175.09807 * 3 2 1 6 6 N 1.47158 * 108.38278 * 172.27645 * 5 3 2 7 7 C 1.34779 * 120.98047 * 129.44608 * 6 5 3 8 8 O 1.21581 * 119.99986 * 354.77957 * 7 6 5 9 9 N 1.34770 * 120.00053 * 174.78151 * 7 6 5 10 10 C 1.46495 * 120.00331 * 184.97222 * 9 7 6 11 11 C 1.53003 * 109.47458 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47159 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47180 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99768 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00198 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99745 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99823 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47119 * 90.00200 * 17 15 13 19 19 H 1.48505 * 109.46614 * 209.99918 * 17 15 13 20 20 H 1.48501 * 109.47255 * 329.99433 * 17 15 13 21 21 C 1.47145 * 118.03441 * 309.45919 * 6 5 3 22 22 C 1.53298 * 108.38407 * 50.54454 * 21 6 5 23 23 H 1.08998 * 109.51501 * 67.61272 * 22 21 6 24 24 C 1.52999 * 109.51234 * 187.77361 * 22 21 6 25 25 O 1.42963 * 109.50995 * 294.89370 * 3 2 1 26 26 H 1.09007 * 109.46367 * 60.00363 * 1 2 3 27 27 H 1.08994 * 109.47420 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47054 * 300.00578 * 1 2 3 29 29 H 1.09004 * 109.47533 * 239.99103 * 2 1 3 30 30 H 1.09005 * 109.46632 * 120.00097 * 2 1 3 31 31 H 1.08999 * 109.68207 * 292.00148 * 5 3 2 32 32 H 1.08997 * 109.68382 * 52.51790 * 5 3 2 33 33 H 0.97003 * 119.99929 * 4.96950 * 9 7 6 34 34 H 1.08993 * 109.47241 * 300.00303 * 10 9 7 35 35 H 1.09005 * 109.46863 * 60.00501 * 10 9 7 36 36 H 1.08993 * 109.47565 * 300.00623 * 11 10 9 37 37 H 1.09005 * 109.46251 * 60.00645 * 11 10 9 38 38 H 1.08993 * 109.47572 * 300.00841 * 12 11 10 39 39 H 1.09006 * 109.46546 * 60.00757 * 12 11 10 40 40 H 0.97000 * 119.99972 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.67829 * 170.26033 * 21 6 5 42 42 H 1.08997 * 109.68824 * 290.81663 * 21 6 5 43 43 H 1.08996 * 109.47350 * 59.99599 * 24 22 21 44 44 H 1.09004 * 109.46740 * 179.97438 * 24 22 21 45 45 H 1.09002 * 109.46904 * 299.99384 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6058 1.9822 0.8416 5 6 3.5680 1.4452 0.1235 6 7 4.0464 2.8240 -0.0657 7 6 4.8925 3.3919 0.8164 8 8 5.1973 2.8002 1.8339 9 7 5.4008 4.6156 0.5706 10 6 6.4033 5.1873 1.4730 11 6 6.8110 6.5735 0.9700 12 6 7.8575 7.1707 1.9129 13 6 8.2587 8.5364 1.4178 14 1 7.8115 8.9384 0.5205 15 6 9.1964 9.2728 2.1101 16 7 9.7413 8.7830 3.2023 17 14 9.6931 10.9658 1.4967 18 1 8.8054 11.9913 2.1013 19 1 11.1005 11.2392 1.8836 20 1 9.5682 11.0128 0.0177 21 6 3.5733 3.5643 -1.2460 22 6 2.0451 3.4584 -1.3028 23 1 1.6109 4.0054 -0.4659 24 6 1.5402 4.0515 -2.6196 25 8 1.6645 2.0817 -1.2223 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5140 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 3.8571 1.0887 1.1121 32 1 3.9993 0.7985 -0.6406 33 1 5.1028 5.1180 -0.2039 34 1 5.9833 5.2730 2.4751 35 1 7.2792 4.5390 1.5003 36 1 7.2311 6.4875 -0.0320 37 1 5.9352 7.2220 0.9424 38 1 7.4370 7.2569 2.9147 39 1 8.7333 6.5224 1.9409 40 1 10.4008 9.3012 3.6896 41 1 3.8659 4.6112 -1.1642 42 1 4.0051 3.1314 -2.1484 43 1 1.9734 3.5021 -3.4554 44 1 0.4536 3.9754 -2.6594 45 1 1.8339 5.0994 -2.6823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171847708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:01 Heat of formation + Delta-G solvation = -92.706061 kcal Electronic energy + Delta-G solvation = -22724.501132 eV Core-core repulsion = 19355.502407 eV Total energy + Delta-G solvation = -3368.998725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66990 -38.87176 -35.55248 -35.18938 -34.55762 -33.27823 -31.77270 -31.19453 -28.75614 -26.87036 -26.30997 -24.15583 -22.76635 -21.95285 -21.30708 -20.63566 -19.60805 -18.11798 -17.15665 -16.56981 -16.15597 -15.91507 -15.44246 -14.93230 -14.66041 -14.52239 -14.37425 -14.09204 -13.92784 -13.54006 -13.24627 -12.70757 -12.62823 -12.38560 -12.22926 -12.11172 -11.82039 -11.74494 -11.60022 -11.33572 -11.26367 -10.91959 -10.84808 -10.70252 -10.60093 -10.32574 -10.04781 -9.87611 -9.45652 -9.13540 -8.94456 -8.47564 -8.37956 -6.02498 -4.05693 2.53838 3.25330 3.28697 3.30071 3.36459 3.39104 3.91341 4.28631 4.43586 4.52218 4.59866 4.69782 4.74572 4.85242 4.98854 5.03074 5.18516 5.29638 5.33250 5.33901 5.40675 5.49658 5.56172 5.64357 5.65841 5.68323 5.78829 5.79446 5.84904 5.99953 6.16313 6.22419 6.50155 6.60325 6.75177 6.88946 6.96751 7.00502 7.62853 7.75585 7.96214 7.99833 8.36983 8.66193 9.00902 9.58451 11.08811 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.002727 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.378907 B =10265.160507 C =10943.786393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.078 3.922 4 H 0.063 0.937 5 C 0.101 3.899 6 N -0.638 5.638 7 C 0.706 3.294 8 O -0.589 6.589 9 N -0.741 5.741 10 C 0.134 3.866 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.083 3.917 22 C 0.075 3.925 23 H 0.063 0.937 24 C -0.144 4.144 25 O -0.372 6.372 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.392 0.608 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.787 -14.970 -11.203 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.019 3.981 4 H 0.081 0.919 5 C -0.022 4.022 6 N -0.377 5.377 7 C 0.407 3.593 8 O -0.467 6.467 9 N -0.397 5.397 10 C 0.011 3.989 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.041 4.041 22 C 0.016 3.984 23 H 0.081 0.919 24 C -0.201 4.201 25 O -0.292 6.292 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.228 0.772 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.461 -15.442 -10.433 26.232 hybrid contribution 0.402 1.422 -0.460 1.548 sum -18.059 -14.020 -10.893 25.325 Atomic orbital electron populations 1.21696 0.94969 1.01594 1.02313 1.21500 0.96940 0.93638 1.03105 1.22564 0.93493 0.94641 0.87364 0.91904 1.22150 0.93753 0.82152 1.04154 1.47299 1.49818 1.15074 1.25535 1.15886 0.78930 0.81719 0.82753 1.90905 1.64754 1.64236 1.26766 1.45547 1.45674 1.17081 1.31378 1.21543 0.89518 0.95245 0.92638 1.21891 1.00577 0.92486 1.00845 1.19027 0.92785 0.95385 0.94159 1.21197 1.23016 1.01522 1.10321 0.92665 1.25033 0.96241 0.98229 0.94997 1.69966 1.28555 1.37772 1.16950 0.86577 0.77786 0.84452 0.79066 1.20659 1.21201 1.19907 1.22366 0.95170 0.97497 0.89104 1.22463 0.93125 0.83456 0.99327 0.91885 1.21739 1.02248 1.00671 0.95468 1.87962 1.79755 1.23345 1.38093 0.91949 0.92646 0.92892 0.90837 0.90191 0.87934 0.91081 0.77209 0.91828 0.91946 0.92777 0.92801 0.96226 0.96225 0.92914 0.89400 0.90484 0.91479 0.91407 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.81 37.16 0.36 -0.66 16 2 C -0.11 -0.84 5.64 -26.73 -0.15 -0.99 16 3 C 0.08 0.73 2.77 -26.58 -0.07 0.66 16 4 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 5 C 0.10 1.11 5.94 -3.53 -0.02 1.09 16 6 N -0.64 -7.95 3.02 -178.01 -0.54 -8.49 16 7 C 0.71 11.42 8.31 -86.92 -0.72 10.69 16 8 O -0.59 -11.82 15.82 5.29 0.08 -11.73 16 9 N -0.74 -11.25 5.47 -65.23 -0.36 -11.60 16 10 C 0.13 2.42 5.68 -4.04 -0.02 2.40 16 11 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.08 0.77 5.86 -3.54 -0.02 0.75 16 22 C 0.07 0.65 3.40 -26.58 -0.09 0.56 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 C -0.14 -0.92 9.57 37.16 0.36 -0.56 16 25 O -0.37 -3.64 9.58 -35.23 -0.34 -3.98 16 26 H 0.06 0.48 7.83 -51.92 -0.41 0.07 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 1.25 7.06 -51.93 -0.37 0.89 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.39 4.84 6.03 -40.82 -0.25 4.60 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.09 0.72 5.78 -51.93 -0.30 0.42 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -33.08 360.98 -9.11 -42.19 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -8.05 Total: -0.69 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.07 Total: -1.45 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.16 Total: -46.20 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.25 Total: -15.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.08 -9.11 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171847708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.516 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds