Wall clock time and date at job start Tue Mar 31 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47575 * 2 1 4 4 H 1.09005 * 109.51478 * 54.99490 * 3 2 1 5 5 C 1.53292 * 109.51480 * 175.09807 * 3 2 1 6 6 N 1.47158 * 108.38278 * 172.27645 * 5 3 2 7 7 C 1.34779 * 120.98047 * 129.44608 * 6 5 3 8 8 O 1.21581 * 119.99986 * 354.77957 * 7 6 5 9 9 N 1.34770 * 120.00053 * 174.78151 * 7 6 5 10 10 C 1.46495 * 120.00331 * 184.97222 * 9 7 6 11 11 C 1.53003 * 109.47458 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47159 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47180 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99768 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00198 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99745 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99823 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47119 * 90.00200 * 17 15 13 19 19 H 1.48505 * 109.46614 * 209.99918 * 17 15 13 20 20 H 1.48501 * 109.47255 * 329.99433 * 17 15 13 21 21 C 1.47145 * 118.03441 * 309.45919 * 6 5 3 22 22 C 1.53298 * 108.38407 * 50.54454 * 21 6 5 23 23 H 1.08998 * 109.51501 * 67.61272 * 22 21 6 24 24 C 1.52999 * 109.51234 * 187.77361 * 22 21 6 25 25 O 1.42963 * 109.50995 * 294.89370 * 3 2 1 26 26 H 1.09007 * 109.46367 * 60.00363 * 1 2 3 27 27 H 1.08994 * 109.47420 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47054 * 300.00578 * 1 2 3 29 29 H 1.09004 * 109.47533 * 239.99103 * 2 1 3 30 30 H 1.09005 * 109.46632 * 120.00097 * 2 1 3 31 31 H 1.08999 * 109.68207 * 292.00148 * 5 3 2 32 32 H 1.08997 * 109.68382 * 52.51790 * 5 3 2 33 33 H 0.97003 * 119.99929 * 4.96950 * 9 7 6 34 34 H 1.08993 * 109.47241 * 300.00303 * 10 9 7 35 35 H 1.09005 * 109.46863 * 60.00501 * 10 9 7 36 36 H 1.08993 * 109.47565 * 300.00623 * 11 10 9 37 37 H 1.09005 * 109.46251 * 60.00645 * 11 10 9 38 38 H 1.08993 * 109.47572 * 300.00841 * 12 11 10 39 39 H 1.09006 * 109.46546 * 60.00757 * 12 11 10 40 40 H 0.97000 * 119.99972 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.67829 * 170.26033 * 21 6 5 42 42 H 1.08997 * 109.68824 * 290.81663 * 21 6 5 43 43 H 1.08996 * 109.47350 * 59.99599 * 24 22 21 44 44 H 1.09004 * 109.46740 * 179.97438 * 24 22 21 45 45 H 1.09002 * 109.46904 * 299.99384 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6058 1.9822 0.8416 5 6 3.5680 1.4452 0.1235 6 7 4.0464 2.8240 -0.0657 7 6 4.8925 3.3919 0.8164 8 8 5.1973 2.8002 1.8339 9 7 5.4008 4.6156 0.5706 10 6 6.4033 5.1873 1.4730 11 6 6.8110 6.5735 0.9700 12 6 7.8575 7.1707 1.9129 13 6 8.2587 8.5364 1.4178 14 1 7.8115 8.9384 0.5205 15 6 9.1964 9.2728 2.1101 16 7 9.7413 8.7830 3.2023 17 14 9.6931 10.9658 1.4967 18 1 8.8054 11.9913 2.1013 19 1 11.1005 11.2392 1.8836 20 1 9.5682 11.0128 0.0177 21 6 3.5733 3.5643 -1.2460 22 6 2.0451 3.4584 -1.3028 23 1 1.6109 4.0054 -0.4659 24 6 1.5402 4.0515 -2.6196 25 8 1.6645 2.0817 -1.2223 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5140 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 3.8571 1.0887 1.1121 32 1 3.9993 0.7985 -0.6406 33 1 5.1028 5.1180 -0.2039 34 1 5.9833 5.2730 2.4751 35 1 7.2792 4.5390 1.5003 36 1 7.2311 6.4875 -0.0320 37 1 5.9352 7.2220 0.9424 38 1 7.4370 7.2569 2.9147 39 1 8.7333 6.5224 1.9409 40 1 10.4008 9.3012 3.6896 41 1 3.8659 4.6112 -1.1642 42 1 4.0051 3.1314 -2.1484 43 1 1.9734 3.5021 -3.4554 44 1 0.4536 3.9754 -2.6594 45 1 1.8339 5.0994 -2.6823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171847708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:00 Heat of formation + Delta-G solvation = -113.979984 kcal Electronic energy + Delta-G solvation = -22725.423638 eV Core-core repulsion = 19355.502407 eV Total energy + Delta-G solvation = -3369.921231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71074 -39.89114 -37.07722 -36.10883 -35.44045 -35.13072 -32.98028 -32.40433 -29.75749 -28.33210 -27.32071 -25.38386 -24.19855 -22.69547 -22.31299 -22.05800 -20.81329 -19.26948 -18.50985 -17.91302 -17.40189 -17.06268 -16.50373 -16.42578 -15.88086 -15.67210 -15.60234 -15.21109 -14.79601 -14.49426 -14.28948 -14.04419 -13.76461 -13.52311 -13.30790 -13.14381 -13.01777 -12.78141 -12.75403 -12.52549 -12.37483 -12.29256 -11.97089 -11.86570 -11.75698 -11.68597 -11.52849 -11.28879 -11.16895 -11.05516 -10.55299 -10.26974 -9.50252 -8.19232 -6.30779 1.41493 1.43557 1.44481 1.54582 1.98553 2.41933 2.60445 2.81071 3.14632 3.54685 3.80340 3.86763 3.96569 4.02575 4.11100 4.20712 4.22817 4.35140 4.37599 4.48401 4.53771 4.58888 4.67576 4.77941 4.87822 4.92941 4.93803 4.95574 5.01951 5.11592 5.14947 5.23501 5.28167 5.33970 5.41832 5.43912 5.52224 5.70337 5.77910 5.84216 6.16907 6.22246 6.82438 6.87367 7.38734 7.41822 8.92976 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.002727 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.378907 B =10265.160507 C =10943.786393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.084 3.916 4 H 0.051 0.949 5 C 0.098 3.902 6 N -0.633 5.633 7 C 0.701 3.299 8 O -0.634 6.634 9 N -0.729 5.729 10 C 0.149 3.851 11 C -0.099 4.099 12 C 0.024 3.976 13 C -0.540 4.540 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.259 1.259 21 C 0.078 3.922 22 C 0.073 3.927 23 H 0.056 0.944 24 C -0.138 4.138 25 O -0.377 6.377 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.409 0.591 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.068 0.932 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.997 -14.323 -13.637 28.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C 0.025 3.975 4 H 0.069 0.931 5 C -0.025 4.025 6 N -0.371 5.371 7 C 0.402 3.598 8 O -0.516 6.516 9 N -0.387 5.387 10 C 0.024 3.976 11 C -0.137 4.137 12 C -0.014 4.014 13 C -0.578 4.578 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.183 1.183 21 C -0.045 4.045 22 C 0.015 3.985 23 H 0.074 0.926 24 C -0.196 4.196 25 O -0.297 6.297 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.248 0.752 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.722 -14.796 -12.935 27.843 hybrid contribution 0.745 1.166 0.296 1.415 sum -18.977 -13.630 -12.640 26.564 Atomic orbital electron populations 1.21668 0.94497 1.02309 1.01798 1.21522 0.97276 0.92285 1.03829 1.22523 0.92127 0.95790 0.87027 0.93084 1.22287 0.95000 0.81523 1.03678 1.47364 1.48530 1.15654 1.25531 1.16042 0.79315 0.81627 0.82771 1.90874 1.66466 1.65329 1.28908 1.45198 1.44982 1.17092 1.31406 1.21122 0.89644 0.94381 0.92441 1.21587 0.99341 0.92942 0.99873 1.18939 0.93333 0.94891 0.94234 1.21673 1.23014 1.02408 1.10675 0.91425 1.26039 0.96304 1.02775 0.95097 1.70115 1.29342 1.39678 1.18452 0.85402 0.77252 0.78944 0.79163 1.19830 1.21121 1.18334 1.22646 0.95747 0.97983 0.88090 1.22584 0.92511 0.83001 1.00444 0.92615 1.21738 1.02296 1.01460 0.94062 1.87973 1.79745 1.23970 1.38006 0.92677 0.91333 0.93162 0.90240 0.89349 0.89625 0.89777 0.75249 0.93488 0.93397 0.91251 0.91311 0.98972 0.98924 0.92826 0.88101 0.89043 0.91050 0.91265 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.81 71.98 0.71 -1.11 16 2 C -0.11 -1.49 5.64 30.59 0.17 -1.32 16 3 C 0.08 1.50 2.77 30.69 0.09 1.59 16 4 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 5 C 0.10 2.09 5.94 86.35 0.51 2.61 16 6 N -0.63 -15.15 3.02 -835.37 -2.52 -17.67 16 7 C 0.70 22.50 8.31 179.06 1.49 23.99 16 8 O -0.63 -26.08 15.82 -3.97 -0.06 -26.15 16 9 N -0.73 -21.44 5.47 -478.56 -2.62 -24.06 16 10 C 0.15 5.41 5.68 86.38 0.49 5.90 16 11 C -0.10 -3.83 5.27 30.59 0.16 -3.66 16 12 C 0.02 1.24 4.97 29.85 0.15 1.39 16 13 C -0.54 -29.97 9.11 25.60 0.23 -29.73 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 15 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 16 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 17 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 21 C 0.08 1.27 5.86 86.36 0.51 1.78 16 22 C 0.07 1.12 3.40 30.69 0.10 1.22 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 C -0.14 -1.40 9.57 71.98 0.69 -0.71 16 25 O -0.38 -6.76 9.58 -148.98 -1.43 -8.19 16 26 H 0.05 0.77 7.83 -2.38 -0.02 0.75 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.09 2.14 7.06 -2.39 -0.02 2.12 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.41 9.16 6.03 -92.71 -0.56 8.60 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 38 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.10 1.37 5.78 -2.39 -0.01 1.35 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -72.19 360.98 1.83 -70.36 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.39 Total: 14.89 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.76 Total: 2.14 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -4.85 Total: -98.68 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.49 Total: -34.34 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.19 1.83 -70.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171847708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.622 kcal (2) G-P(sol) polarization free energy of solvation -72.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds