Wall clock time and date at job start Tue Mar 31 2020 05:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47491 * 2 1 4 4 O 1.42906 * 110.88630 * 303.88405 * 3 2 1 5 5 C 1.55153 * 111.00760 * 180.02562 * 3 2 1 6 6 C 1.54325 * 102.94361 * 206.42418 * 5 3 2 7 7 N 1.47022 * 107.27030 * 22.18973 * 6 5 3 8 8 C 1.34775 * 125.64539 * 181.01769 * 7 6 5 9 9 O 1.21589 * 119.99889 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00068 * 0.03316 * 8 7 6 11 11 C 1.46504 * 119.99531 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46883 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47164 * 300.00241 * 12 11 10 14 14 C 1.52999 * 109.46623 * 60.00141 * 12 11 10 15 15 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99944 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 12 20 20 H 1.48510 * 109.46866 * 90.00390 * 19 17 15 21 21 H 1.48502 * 109.47245 * 210.00175 * 19 17 15 22 22 H 1.48494 * 109.47271 * 330.00312 * 19 17 15 23 23 C 1.47421 * 108.70024 * 1.28899 * 7 6 5 24 24 H 1.09002 * 109.46527 * 299.99739 * 1 2 3 25 25 H 1.09000 * 109.47542 * 59.99542 * 1 2 3 26 26 H 1.09001 * 109.47630 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46699 * 239.99894 * 2 1 3 28 28 H 1.09000 * 109.47542 * 120.00458 * 2 1 3 29 29 H 0.96703 * 113.99910 * 56.11293 * 4 3 2 30 30 H 1.09004 * 110.72258 * 88.06123 * 5 3 2 31 31 H 1.08999 * 110.87463 * 324.85950 * 5 3 2 32 32 H 1.09001 * 109.87772 * 262.77355 * 6 5 3 33 33 H 1.09003 * 110.01070 * 141.68022 * 6 5 3 34 34 H 0.96992 * 120.00503 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46891 * 60.00097 * 11 10 8 36 36 H 1.08993 * 109.47378 * 299.99469 * 11 10 8 37 37 H 1.09000 * 109.47140 * 60.00051 * 13 12 11 38 38 H 1.09001 * 109.47230 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47375 * 300.00034 * 13 12 11 40 40 H 1.09001 * 109.47362 * 60.00551 * 14 12 11 41 41 H 1.09002 * 109.46716 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.47486 * 299.99829 * 14 12 11 43 43 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 44 44 H 1.09004 * 110.36630 * 94.48518 * 23 7 6 45 45 H 1.08999 * 110.36428 * 216.80018 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.5081 2.1709 -1.1084 5 6 3.5910 1.4839 -0.0006 6 6 3.9008 2.8395 0.6687 7 7 2.7215 3.2137 1.4630 8 6 2.5874 4.3436 2.1854 9 8 1.5629 4.5497 2.8069 10 7 3.5888 5.2449 2.2188 11 6 3.4427 6.4733 3.0037 12 6 4.7128 7.3164 2.8725 13 6 5.9104 6.5186 3.3921 14 6 4.9376 7.6743 1.4021 15 6 4.5623 8.5803 3.6794 16 1 3.6520 8.7637 4.2309 17 6 5.5871 9.5020 3.7143 18 7 6.6958 9.2784 3.0431 19 14 5.4008 11.0683 4.7150 20 1 5.8962 10.8355 6.0955 21 1 6.1896 12.1563 4.0829 22 1 3.9688 11.4582 4.7620 23 6 1.7128 2.1453 1.3436 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5420 2.1732 -1.1504 30 1 3.9771 1.4599 -1.0198 31 1 4.0018 0.6617 0.5853 32 1 4.0890 3.5951 -0.0940 33 1 4.7706 2.7444 1.3188 34 1 4.4062 5.0804 1.7233 35 1 3.2829 6.2182 4.0513 36 1 2.5893 7.0415 2.6337 37 1 6.0191 5.6046 2.8082 38 1 6.8153 7.1190 3.2983 39 1 5.7502 6.2635 4.4397 40 1 4.0844 8.2428 1.0319 41 1 5.8422 8.2753 1.3087 42 1 5.0463 6.7604 0.8181 43 1 7.4166 9.9270 3.0674 44 1 1.8030 1.4440 2.1731 45 1 0.7102 2.5719 1.3137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459249607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:30 Heat of formation + Delta-G solvation = -87.647786 kcal Electronic energy + Delta-G solvation = -23602.781724 eV Core-core repulsion = 20234.002342 eV Total energy + Delta-G solvation = -3368.779381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32034 -38.63911 -36.37401 -35.39130 -33.28005 -32.97506 -30.99503 -30.35370 -28.17544 -25.68476 -25.65693 -25.12994 -23.83299 -22.45780 -20.48995 -19.74995 -18.76495 -17.90170 -17.21511 -15.87352 -15.84127 -15.54411 -15.16114 -14.69888 -14.32306 -14.18915 -14.05355 -13.46622 -13.09849 -12.99637 -12.83583 -12.64911 -12.46668 -12.15848 -12.04902 -11.97121 -11.61747 -11.34623 -11.32734 -11.16020 -10.83535 -10.76396 -10.66418 -10.34481 -10.22450 -10.17685 -9.72996 -9.59045 -9.26957 -8.75473 -8.60138 -8.36812 -8.06301 -5.99079 -4.08883 2.94852 3.30584 3.37371 3.41992 3.63999 3.83269 4.16027 4.35891 4.40472 4.45892 4.61211 4.78864 4.97738 5.01107 5.16650 5.27655 5.37749 5.43638 5.56919 5.58840 5.63090 5.65906 5.75050 5.88790 5.91133 6.19257 6.40891 6.41669 6.55380 6.84136 6.87202 6.97801 7.07316 7.15282 7.37855 7.40133 7.47111 7.59826 7.72989 8.04769 8.16098 8.41613 8.48611 8.90984 9.08483 9.56677 11.02434 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.040264 B = 0.003369 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.244106 B = 8308.624480 C = 8590.120717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.140 4.140 3 C 0.116 3.884 4 O -0.545 6.545 5 C -0.115 4.115 6 C 0.103 3.897 7 N -0.637 5.637 8 C 0.717 3.283 9 O -0.599 6.599 10 N -0.730 5.730 11 C 0.150 3.850 12 C 0.056 3.944 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.505 4.505 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.106 3.894 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.376 0.624 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.394 0.606 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.005 0.995 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.005 0.995 43 H 0.259 0.741 44 H 0.069 0.931 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 -18.715 -7.999 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.178 4.178 3 C 0.074 3.926 4 O -0.352 6.352 5 C -0.153 4.153 6 C -0.021 4.021 7 N -0.377 5.377 8 C 0.419 3.581 9 O -0.479 6.479 10 N -0.384 5.384 11 C 0.027 3.973 12 C 0.055 3.945 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.018 4.018 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.225 0.775 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.229 0.771 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.801 -18.231 -7.620 20.593 hybrid contribution -0.215 0.671 0.422 0.822 sum -6.016 -17.560 -7.198 19.908 Atomic orbital electron populations 1.21839 0.95319 1.02526 1.02219 1.22033 0.96738 0.95636 1.03377 1.22369 0.94244 0.90221 0.85781 1.86552 1.25926 1.75497 1.47209 1.22639 0.93119 0.97202 1.02340 1.21928 0.88882 0.96586 0.94696 1.47417 1.18195 1.20114 1.51989 1.15579 0.84165 0.78882 0.79523 1.90874 1.29591 1.78002 1.49389 1.45498 1.17733 1.21557 1.53585 1.21599 1.00305 0.82014 0.93386 1.18360 0.89190 0.92976 0.93924 1.21815 1.02765 0.96613 0.97500 1.21814 1.02727 0.98062 0.96100 1.20996 1.01629 1.02685 1.29023 0.92395 1.24879 0.95164 0.98077 0.95410 1.69810 1.05487 1.35614 1.41619 0.86567 0.78184 0.82918 0.80171 1.20735 1.21290 1.19889 1.22679 0.93409 0.89196 0.96535 0.92067 0.92393 0.92004 0.90669 0.90490 0.77483 0.89131 0.89190 0.91350 0.91541 0.77127 0.92978 0.92972 0.97644 0.89622 0.95464 0.95447 0.89632 0.97615 0.93046 0.91265 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.41 37.15 0.35 -0.60 16 2 C -0.14 -0.91 5.25 -26.74 -0.14 -1.05 16 3 C 0.12 1.07 1.00 -88.36 -0.09 0.98 16 4 O -0.55 -5.72 13.17 -35.23 -0.46 -6.19 16 5 C -0.12 -1.02 6.15 -24.90 -0.15 -1.18 16 6 C 0.10 1.22 6.15 -3.06 -0.02 1.20 16 7 N -0.64 -9.66 3.32 -176.10 -0.59 -10.24 16 8 C 0.72 14.07 8.49 -86.92 -0.74 13.33 16 9 O -0.60 -13.91 16.60 5.29 0.09 -13.83 16 10 N -0.73 -14.27 4.92 -65.22 -0.32 -14.59 16 11 C 0.15 3.37 4.50 -4.04 -0.02 3.36 16 12 C 0.06 1.35 0.50 -155.66 -0.08 1.27 16 13 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 14 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 15 C -0.50 -13.50 8.01 -34.44 -0.28 -13.78 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.89 -23.93 9.35 55.43 0.52 -23.41 16 19 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.11 1.29 5.38 -2.42 -0.01 1.27 16 24 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 25 H 0.06 0.30 6.75 -51.93 -0.35 -0.05 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 29 H 0.38 2.85 7.24 45.56 0.33 3.18 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.62 8.04 -51.93 -0.42 0.20 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.39 7.06 5.15 -40.82 -0.21 6.85 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 38 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 42 H 0.00 0.10 6.86 -51.93 -0.36 -0.25 16 43 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.07 0.77 7.99 -51.93 -0.41 0.36 16 45 H 0.08 1.03 7.97 -51.93 -0.41 0.61 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -31.33 348.28 -8.18 -39.51 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.97 Total: 6.45 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.67 Total: 1.06 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.39 Total: -48.24 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.38 Total: -20.01 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.33 -8.18 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459249607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.137 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds