Wall clock time and date at job start Tue Mar 31 2020 05:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47491 * 2 1 4 4 O 1.42906 * 110.88630 * 303.88405 * 3 2 1 5 5 C 1.55153 * 111.00760 * 180.02562 * 3 2 1 6 6 C 1.54325 * 102.94361 * 206.42418 * 5 3 2 7 7 N 1.47022 * 107.27030 * 22.18973 * 6 5 3 8 8 C 1.34775 * 125.64539 * 181.01769 * 7 6 5 9 9 O 1.21589 * 119.99889 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00068 * 0.03316 * 8 7 6 11 11 C 1.46504 * 119.99531 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46883 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47164 * 300.00241 * 12 11 10 14 14 C 1.52999 * 109.46623 * 60.00141 * 12 11 10 15 15 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99944 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 12 20 20 H 1.48510 * 109.46866 * 90.00390 * 19 17 15 21 21 H 1.48502 * 109.47245 * 210.00175 * 19 17 15 22 22 H 1.48494 * 109.47271 * 330.00312 * 19 17 15 23 23 C 1.47421 * 108.70024 * 1.28899 * 7 6 5 24 24 H 1.09002 * 109.46527 * 299.99739 * 1 2 3 25 25 H 1.09000 * 109.47542 * 59.99542 * 1 2 3 26 26 H 1.09001 * 109.47630 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46699 * 239.99894 * 2 1 3 28 28 H 1.09000 * 109.47542 * 120.00458 * 2 1 3 29 29 H 0.96703 * 113.99910 * 56.11293 * 4 3 2 30 30 H 1.09004 * 110.72258 * 88.06123 * 5 3 2 31 31 H 1.08999 * 110.87463 * 324.85950 * 5 3 2 32 32 H 1.09001 * 109.87772 * 262.77355 * 6 5 3 33 33 H 1.09003 * 110.01070 * 141.68022 * 6 5 3 34 34 H 0.96992 * 120.00503 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46891 * 60.00097 * 11 10 8 36 36 H 1.08993 * 109.47378 * 299.99469 * 11 10 8 37 37 H 1.09000 * 109.47140 * 60.00051 * 13 12 11 38 38 H 1.09001 * 109.47230 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47375 * 300.00034 * 13 12 11 40 40 H 1.09001 * 109.47362 * 60.00551 * 14 12 11 41 41 H 1.09002 * 109.46716 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.47486 * 299.99829 * 14 12 11 43 43 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 44 44 H 1.09004 * 110.36630 * 94.48518 * 23 7 6 45 45 H 1.08999 * 110.36428 * 216.80018 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.5081 2.1709 -1.1084 5 6 3.5910 1.4839 -0.0006 6 6 3.9008 2.8395 0.6687 7 7 2.7215 3.2137 1.4630 8 6 2.5874 4.3436 2.1854 9 8 1.5629 4.5497 2.8069 10 7 3.5888 5.2449 2.2188 11 6 3.4427 6.4733 3.0037 12 6 4.7128 7.3164 2.8725 13 6 5.9104 6.5186 3.3921 14 6 4.9376 7.6743 1.4021 15 6 4.5623 8.5803 3.6794 16 1 3.6520 8.7637 4.2309 17 6 5.5871 9.5020 3.7143 18 7 6.6958 9.2784 3.0431 19 14 5.4008 11.0683 4.7150 20 1 5.8962 10.8355 6.0955 21 1 6.1896 12.1563 4.0829 22 1 3.9688 11.4582 4.7620 23 6 1.7128 2.1453 1.3436 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5420 2.1732 -1.1504 30 1 3.9771 1.4599 -1.0198 31 1 4.0018 0.6617 0.5853 32 1 4.0890 3.5951 -0.0940 33 1 4.7706 2.7444 1.3188 34 1 4.4062 5.0804 1.7233 35 1 3.2829 6.2182 4.0513 36 1 2.5893 7.0415 2.6337 37 1 6.0191 5.6046 2.8082 38 1 6.8153 7.1190 3.2983 39 1 5.7502 6.2635 4.4397 40 1 4.0844 8.2428 1.0319 41 1 5.8422 8.2753 1.3087 42 1 5.0463 6.7604 0.8181 43 1 7.4166 9.9270 3.0674 44 1 1.8030 1.4440 2.1731 45 1 0.7102 2.5719 1.3137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459249607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:29 Heat of formation + Delta-G solvation = -109.154444 kcal Electronic energy + Delta-G solvation = -23603.714322 eV Core-core repulsion = 20234.002342 eV Total energy + Delta-G solvation = -3369.711980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50220 -39.85823 -38.13671 -36.48534 -34.99128 -33.74138 -32.71370 -31.43143 -29.13406 -27.58686 -27.45215 -26.76601 -25.03947 -23.27984 -21.25979 -21.15572 -20.60484 -19.25669 -18.05559 -17.81632 -17.04649 -16.80222 -16.68299 -16.10850 -15.57357 -15.35061 -15.03339 -14.84681 -14.50658 -14.45518 -14.02807 -13.94397 -13.61109 -13.36554 -13.19198 -13.10337 -12.88359 -12.70547 -12.59983 -12.58318 -12.36079 -12.26288 -12.13954 -11.86839 -11.50642 -11.45334 -11.39240 -11.18850 -10.94296 -10.72299 -10.40843 -10.13051 -9.43809 -8.02783 -6.18690 1.42932 1.45207 1.53655 1.64656 2.12359 2.45835 3.03441 3.20743 3.21379 3.44746 3.62267 3.78570 4.22083 4.24872 4.37468 4.43710 4.45780 4.50202 4.57800 4.65538 4.68642 4.83578 4.89325 4.95125 5.00441 5.03205 5.07314 5.08391 5.13509 5.17566 5.24060 5.30817 5.35700 5.44195 5.59691 5.65167 5.66525 6.05524 6.12548 6.19883 6.42541 6.75436 6.85041 6.99649 7.48958 7.55513 8.96544 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.040264 B = 0.003369 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.244106 B = 8308.624480 C = 8590.120717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.131 4.131 3 C 0.123 3.877 4 O -0.563 6.563 5 C -0.108 4.108 6 C 0.092 3.908 7 N -0.635 5.635 8 C 0.710 3.290 9 O -0.643 6.643 10 N -0.724 5.724 11 C 0.167 3.833 12 C 0.053 3.947 13 C -0.118 4.118 14 C -0.118 4.118 15 C -0.530 4.530 16 H 0.045 0.955 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.276 1.276 23 C 0.097 3.903 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.386 0.614 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.403 0.597 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.065 0.935 39 H 0.018 0.982 40 H 0.016 0.984 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.081 0.919 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 -20.649 -8.928 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.169 4.169 3 C 0.081 3.919 4 O -0.372 6.372 5 C -0.146 4.146 6 C -0.030 4.030 7 N -0.372 5.372 8 C 0.412 3.588 9 O -0.526 6.526 10 N -0.379 5.379 11 C 0.043 3.957 12 C 0.052 3.948 13 C -0.176 4.176 14 C -0.176 4.176 15 C -0.569 4.569 16 H 0.063 0.937 17 C -0.171 4.171 18 N -0.538 5.538 19 Si 0.774 3.226 20 H -0.204 1.204 21 H -0.207 1.207 22 H -0.201 1.201 23 C -0.026 4.026 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.237 0.763 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.240 0.760 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.261 -20.215 -8.592 22.586 hybrid contribution -0.406 1.231 0.679 1.463 sum -5.668 -18.984 -7.913 21.334 Atomic orbital electron populations 1.21857 0.95077 1.03155 1.01986 1.21991 0.96925 0.93506 1.04498 1.22425 0.94631 0.91202 0.83636 1.86523 1.27100 1.76054 1.47495 1.22724 0.92731 0.96034 1.03076 1.22218 0.87977 0.98279 0.94530 1.47479 1.20060 1.19028 1.50667 1.15742 0.83400 0.79875 0.79793 1.90836 1.31125 1.79225 1.51366 1.45213 1.18337 1.20829 1.53494 1.21161 0.98905 0.82845 0.92808 1.18351 0.90004 0.92450 0.93963 1.21647 1.01182 0.97268 0.97490 1.21652 1.01142 0.98782 0.96030 1.21264 1.01427 1.04375 1.29823 0.93702 1.25459 0.94978 1.00402 0.96264 1.69906 1.05694 1.36231 1.41965 0.85727 0.77882 0.79994 0.79015 1.20383 1.20703 1.20123 1.22992 0.91948 0.88591 0.99089 0.93049 0.91986 0.90929 0.89471 0.89339 0.76309 0.88004 0.86540 0.92024 0.90371 0.76025 0.94555 0.94858 0.94808 0.91668 0.96244 0.96445 0.91629 0.94957 0.92948 0.90051 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.41 71.98 0.68 -0.88 16 2 C -0.13 -1.30 5.25 30.59 0.16 -1.14 16 3 C 0.12 1.96 1.00 -9.33 -0.01 1.95 16 4 O -0.56 -10.77 13.17 -148.98 -1.96 -12.73 16 5 C -0.11 -1.55 6.15 31.78 0.20 -1.36 16 6 C 0.09 1.98 6.15 86.73 0.53 2.52 16 7 N -0.63 -18.54 3.32 -829.33 -2.76 -21.30 16 8 C 0.71 27.87 8.49 179.06 1.52 29.39 16 9 O -0.64 -30.50 16.60 -4.00 -0.07 -30.56 16 10 N -0.72 -28.07 4.92 -478.52 -2.35 -30.42 16 11 C 0.17 7.66 4.50 86.38 0.39 8.04 16 12 C 0.05 2.55 0.50 -52.93 -0.03 2.52 16 13 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 14 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 15 C -0.53 -28.81 8.01 25.60 0.21 -28.60 16 16 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 17 C 0.03 1.54 5.15 84.65 0.44 1.97 16 18 N -0.90 -48.51 9.35 21.45 0.20 -48.31 16 19 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 C 0.10 2.23 5.38 86.93 0.47 2.70 16 24 H 0.05 0.59 7.51 -2.39 -0.02 0.57 16 25 H 0.06 0.53 6.75 -2.39 -0.02 0.52 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.09 0.71 8.07 -2.39 -0.02 0.69 16 29 H 0.39 5.35 7.24 -74.06 -0.54 4.81 16 30 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.12 1.09 8.04 -2.39 -0.02 1.07 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.40 13.89 5.15 -92.71 -0.48 13.41 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 38 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 42 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 43 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 44 H 0.08 1.68 7.99 -2.38 -0.02 1.66 16 45 H 0.06 1.61 7.97 -2.39 -0.02 1.59 16 Total: -1.00 -67.91 348.28 0.77 -67.15 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.03 Total: 23.56 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.71 Total: 7.41 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -4.91 Total: -100.03 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -2.03 Total: -43.30 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.91 0.77 -67.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459249607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.009 kcal (2) G-P(sol) polarization free energy of solvation -67.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds