Wall clock time and date at job start Tue Mar 31 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 C 1.53005 * 109.47004 * 300.59886 * 3 2 1 5 5 C 1.52998 * 109.47059 * 295.53973 * 4 3 2 6 6 C 1.50696 * 109.47204 * 60.59766 * 3 2 1 7 7 O 1.21285 * 120.00491 * 240.00244 * 6 3 2 8 8 N 1.34775 * 120.00084 * 60.00226 * 6 3 2 9 9 C 1.46501 * 120.00223 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.47181 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.50678 * 304.99947 * 10 9 8 12 12 C 1.53289 * 109.51003 * 184.89689 * 10 9 8 13 13 N 1.47153 * 108.38237 * 187.72427 * 12 10 9 14 14 C 1.36946 * 120.97927 * 230.55802 * 13 12 10 15 15 H 1.07997 * 120.00236 * 28.68784 * 14 13 12 16 16 C 1.38816 * 119.99622 * 208.68926 * 14 13 12 17 17 N 1.31621 * 120.00005 * 12.33555 * 16 14 13 18 18 Si 1.86799 * 119.99761 * 192.33283 * 16 14 13 19 19 H 1.48497 * 109.46849 * 90.00281 * 18 16 14 20 20 H 1.48504 * 109.47024 * 210.00200 * 18 16 14 21 21 H 1.48497 * 109.47310 * 329.99956 * 18 16 14 22 22 C 1.47150 * 118.03553 * 50.53613 * 13 12 10 23 23 C 1.53292 * 108.38324 * 309.46458 * 22 13 12 24 24 O 1.42953 * 109.22568 * 52.30266 * 23 22 13 25 25 H 1.08993 * 109.47187 * 306.88830 * 1 2 3 26 26 H 1.08999 * 109.46992 * 66.89295 * 1 2 3 27 27 H 1.09003 * 109.46593 * 186.89185 * 1 2 3 28 28 H 1.09001 * 109.47298 * 240.00268 * 2 1 3 29 29 H 1.09005 * 109.47635 * 119.99761 * 2 1 3 30 30 H 1.09005 * 109.47451 * 180.60051 * 3 2 1 31 31 H 1.08994 * 109.47106 * 55.54106 * 4 3 2 32 32 H 1.08997 * 109.47208 * 175.53944 * 4 3 2 33 33 H 1.08999 * 109.47578 * 306.22217 * 5 4 3 34 34 H 1.09005 * 109.47199 * 66.21997 * 5 4 3 35 35 H 1.09000 * 109.46963 * 186.21436 * 5 4 3 36 36 H 0.97003 * 119.99676 * 359.97438 * 8 6 3 37 37 H 1.09000 * 109.46941 * 59.99719 * 9 8 6 38 38 H 1.09003 * 109.47013 * 299.99869 * 9 8 6 39 39 H 1.08996 * 109.68759 * 307.44543 * 12 10 9 40 40 H 1.09007 * 109.68370 * 67.96425 * 12 10 9 41 41 H 0.97004 * 119.99846 * 179.97438 * 17 16 14 42 42 H 1.08995 * 109.68210 * 69.19007 * 22 13 12 43 43 H 1.09005 * 109.67837 * 189.70362 * 22 13 12 44 44 H 1.09001 * 109.51398 * 172.23059 * 23 22 13 45 45 H 1.09000 * 109.51480 * 292.37869 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5177 2.1681 -1.2417 5 6 2.1049 1.5189 -2.4965 6 6 1.5498 2.1486 1.2378 7 8 0.8514 3.1351 1.1369 8 7 1.8874 1.6840 2.4570 9 6 1.4104 2.3701 3.6603 10 6 1.9323 1.6442 4.9020 11 1 1.6439 0.5940 4.8578 12 6 1.3355 2.2867 6.1593 13 7 1.9917 1.6979 7.3375 14 6 1.2552 1.1971 8.3778 15 1 0.2673 0.7996 8.1980 16 6 1.7786 1.2005 9.6635 17 7 2.8648 1.8945 9.9301 18 14 0.9412 0.2203 11.0153 19 1 1.5080 -1.1517 11.0555 20 1 1.1666 0.8875 12.3227 21 1 -0.5166 0.1460 10.7424 22 6 3.4625 1.6626 7.3645 23 6 3.9557 1.0505 6.0484 24 8 3.3574 1.7464 4.9523 25 1 -0.3633 0.6168 0.8219 26 1 -0.3633 0.4033 -0.9452 27 1 -0.3632 -1.0203 0.1233 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1300 1.4426 -0.0108 31 1 0.4303 2.0995 -1.2720 32 1 1.8146 3.2161 -1.2019 33 1 3.1914 1.4882 -2.4152 34 1 1.7191 0.5041 -2.5950 35 1 1.8223 2.1016 -3.3732 36 1 2.4457 0.8948 2.5377 37 1 0.3205 2.3696 3.6709 38 1 1.7734 3.3979 3.6605 39 1 1.5110 3.3623 6.1407 40 1 0.2640 2.0903 6.1987 41 1 3.2303 1.8971 10.8286 42 1 3.8522 2.6753 7.4672 43 1 3.7997 1.0528 8.2028 44 1 5.0403 1.1410 5.9887 45 1 3.6747 -0.0019 6.0085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753645596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:25 Heat of formation + Delta-G solvation = -81.411474 kcal Electronic energy + Delta-G solvation = -23293.074486 eV Core-core repulsion = 19924.565532 eV Total energy + Delta-G solvation = -3368.508955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.10494 -38.52990 -36.22741 -34.88154 -34.28474 -31.71821 -31.32193 -30.62298 -28.11890 -27.15053 -25.26216 -23.67274 -23.21103 -22.08481 -21.27502 -19.89021 -19.10253 -17.15335 -16.79476 -16.17381 -16.09102 -15.71414 -15.16169 -14.92271 -14.41556 -14.16857 -13.86006 -13.58460 -13.47484 -13.24025 -13.15330 -12.98661 -12.72982 -12.28264 -12.22246 -11.89938 -11.59881 -11.54828 -11.33100 -11.10729 -10.90385 -10.77276 -10.73345 -10.69222 -10.41908 -10.26534 -10.04613 -9.76713 -9.58412 -9.06922 -8.92196 -8.58364 -6.74892 -5.86416 -3.34334 2.73709 3.26716 3.32099 3.38962 3.40381 4.22568 4.40135 4.50561 4.59719 4.68053 5.03245 5.03920 5.13064 5.15493 5.29076 5.31670 5.47509 5.47939 5.49555 5.50592 5.60586 5.68608 5.79249 5.85173 5.86997 5.89781 6.00025 6.01487 6.05384 6.14850 6.25117 6.28809 6.35425 6.47547 6.57474 6.74283 7.09419 7.51444 7.61563 7.67888 7.84182 8.31939 8.33122 9.09489 9.70692 10.28611 11.21330 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.034116 B = 0.003209 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.543186 B = 8724.306722 C = 8939.190657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.109 4.109 4 C -0.107 4.107 5 C -0.153 4.153 6 C 0.516 3.484 7 O -0.546 6.546 8 N -0.720 5.720 9 C 0.130 3.870 10 C 0.066 3.934 11 H 0.057 0.943 12 C 0.121 3.879 13 N -0.594 5.594 14 C -0.256 4.256 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.905 5.905 18 Si 0.908 3.092 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.140 3.860 23 C 0.039 3.961 24 O -0.390 6.390 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.402 0.598 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.255 0.745 42 H 0.028 0.972 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 -4.616 -19.775 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.131 4.131 4 C -0.145 4.145 5 C -0.210 4.210 6 C 0.302 3.698 7 O -0.424 6.424 8 N -0.371 5.371 9 C 0.006 3.994 10 C 0.006 3.994 11 H 0.075 0.925 12 C -0.006 4.006 13 N -0.318 5.318 14 C -0.385 4.385 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.549 5.549 18 Si 0.738 3.262 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.203 1.203 22 C 0.014 3.986 23 C -0.039 4.039 24 O -0.309 6.309 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.236 0.764 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.100 -3.770 -19.766 20.123 hybrid contribution -0.118 -0.969 1.193 1.541 sum -0.219 -4.739 -18.573 19.169 Atomic orbital electron populations 1.21859 0.95350 1.01794 1.02408 1.21536 0.96766 0.94262 1.02782 1.21448 1.01861 0.96223 0.93534 1.21369 1.01437 0.99603 0.92066 1.21831 1.00884 1.00801 0.97474 1.20590 0.80120 0.84356 0.84703 1.90687 1.38152 1.26526 1.87048 1.45991 1.53452 1.32119 1.05578 1.21400 0.98830 0.97054 0.82117 1.22794 0.82807 0.98902 0.94930 0.92459 1.21451 0.96555 0.95758 0.86813 1.44043 1.01355 1.69159 1.17266 1.19205 1.00392 1.33194 0.85720 0.91422 1.25142 0.98348 0.98858 0.97192 1.69992 1.23345 1.41370 1.20165 0.86203 0.79146 0.79534 0.81348 1.21353 1.21588 1.20343 1.21449 0.83753 0.99212 0.94147 1.23337 0.96606 0.95048 0.88888 1.87785 1.18889 1.75210 1.49042 0.92488 0.92211 0.92524 0.90683 0.91515 0.88644 0.90959 0.91264 0.92727 0.92557 0.92608 0.76389 0.90300 0.90782 0.95237 0.91816 0.93447 0.95381 0.88690 0.90076 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.22 37.16 0.34 -1.05 16 2 C -0.12 -0.93 5.35 -26.73 -0.14 -1.07 16 3 C -0.11 -1.05 2.51 -91.77 -0.23 -1.28 16 4 C -0.11 -1.02 4.51 -26.73 -0.12 -1.14 16 5 C -0.15 -1.08 9.50 37.16 0.35 -0.73 16 6 C 0.52 6.90 5.81 -10.99 -0.06 6.84 16 7 O -0.55 -9.33 15.93 5.55 0.09 -9.25 16 8 N -0.72 -9.43 5.40 -60.29 -0.33 -9.75 16 9 C 0.13 1.98 5.35 -4.04 -0.02 1.96 16 10 C 0.07 1.14 2.81 -26.58 -0.07 1.06 16 11 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 12 C 0.12 2.53 6.02 -3.54 -0.02 2.51 16 13 N -0.59 -14.83 3.04 -171.83 -0.52 -15.35 16 14 C -0.26 -6.91 9.65 -15.05 -0.15 -7.06 16 15 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 16 C 0.00 0.09 5.04 -17.43 -0.09 0.00 16 17 N -0.90 -25.89 11.04 55.49 0.61 -25.28 16 18 Si 0.91 21.32 29.57 -169.99 -5.03 16.30 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.14 3.32 5.41 -3.54 -0.02 3.30 16 23 C 0.04 0.74 6.98 37.31 0.26 1.00 16 24 O -0.39 -7.26 10.34 -35.23 -0.36 -7.62 16 25 H 0.06 0.63 7.01 -51.93 -0.36 0.27 16 26 H 0.06 0.50 6.71 -51.93 -0.35 0.15 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.49 6.72 -51.93 -0.35 0.14 16 29 H 0.07 0.51 7.55 -51.93 -0.39 0.12 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.74 6.34 -51.93 -0.33 0.41 16 32 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.36 6.88 -51.93 -0.36 0.00 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.40 4.59 7.88 -40.82 -0.32 4.26 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.10 2.46 6.18 -51.93 -0.32 2.14 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -31.10 351.71 -8.02 -39.12 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.81 Total: 2.19 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 0.03 Total: 4.35 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.24 Total: -50.38 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.28 Total: -16.87 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.10 -8.02 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753645596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.296 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds