Wall clock time and date at job start Tue Mar 31 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 C 1.53005 * 109.47004 * 300.59886 * 3 2 1 5 5 C 1.52998 * 109.47059 * 295.53973 * 4 3 2 6 6 C 1.50696 * 109.47204 * 60.59766 * 3 2 1 7 7 O 1.21285 * 120.00491 * 240.00244 * 6 3 2 8 8 N 1.34775 * 120.00084 * 60.00226 * 6 3 2 9 9 C 1.46501 * 120.00223 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.47181 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.50678 * 304.99947 * 10 9 8 12 12 C 1.53289 * 109.51003 * 184.89689 * 10 9 8 13 13 N 1.47153 * 108.38237 * 187.72427 * 12 10 9 14 14 C 1.36946 * 120.97927 * 230.55802 * 13 12 10 15 15 H 1.07997 * 120.00236 * 28.68784 * 14 13 12 16 16 C 1.38816 * 119.99622 * 208.68926 * 14 13 12 17 17 N 1.31621 * 120.00005 * 12.33555 * 16 14 13 18 18 Si 1.86799 * 119.99761 * 192.33283 * 16 14 13 19 19 H 1.48497 * 109.46849 * 90.00281 * 18 16 14 20 20 H 1.48504 * 109.47024 * 210.00200 * 18 16 14 21 21 H 1.48497 * 109.47310 * 329.99956 * 18 16 14 22 22 C 1.47150 * 118.03553 * 50.53613 * 13 12 10 23 23 C 1.53292 * 108.38324 * 309.46458 * 22 13 12 24 24 O 1.42953 * 109.22568 * 52.30266 * 23 22 13 25 25 H 1.08993 * 109.47187 * 306.88830 * 1 2 3 26 26 H 1.08999 * 109.46992 * 66.89295 * 1 2 3 27 27 H 1.09003 * 109.46593 * 186.89185 * 1 2 3 28 28 H 1.09001 * 109.47298 * 240.00268 * 2 1 3 29 29 H 1.09005 * 109.47635 * 119.99761 * 2 1 3 30 30 H 1.09005 * 109.47451 * 180.60051 * 3 2 1 31 31 H 1.08994 * 109.47106 * 55.54106 * 4 3 2 32 32 H 1.08997 * 109.47208 * 175.53944 * 4 3 2 33 33 H 1.08999 * 109.47578 * 306.22217 * 5 4 3 34 34 H 1.09005 * 109.47199 * 66.21997 * 5 4 3 35 35 H 1.09000 * 109.46963 * 186.21436 * 5 4 3 36 36 H 0.97003 * 119.99676 * 359.97438 * 8 6 3 37 37 H 1.09000 * 109.46941 * 59.99719 * 9 8 6 38 38 H 1.09003 * 109.47013 * 299.99869 * 9 8 6 39 39 H 1.08996 * 109.68759 * 307.44543 * 12 10 9 40 40 H 1.09007 * 109.68370 * 67.96425 * 12 10 9 41 41 H 0.97004 * 119.99846 * 179.97438 * 17 16 14 42 42 H 1.08995 * 109.68210 * 69.19007 * 22 13 12 43 43 H 1.09005 * 109.67837 * 189.70362 * 22 13 12 44 44 H 1.09001 * 109.51398 * 172.23059 * 23 22 13 45 45 H 1.09000 * 109.51480 * 292.37869 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5177 2.1681 -1.2417 5 6 2.1049 1.5189 -2.4965 6 6 1.5498 2.1486 1.2378 7 8 0.8514 3.1351 1.1369 8 7 1.8874 1.6840 2.4570 9 6 1.4104 2.3701 3.6603 10 6 1.9323 1.6442 4.9020 11 1 1.6439 0.5940 4.8578 12 6 1.3355 2.2867 6.1593 13 7 1.9917 1.6979 7.3375 14 6 1.2552 1.1971 8.3778 15 1 0.2673 0.7996 8.1980 16 6 1.7786 1.2005 9.6635 17 7 2.8648 1.8945 9.9301 18 14 0.9412 0.2203 11.0153 19 1 1.5080 -1.1517 11.0555 20 1 1.1666 0.8875 12.3227 21 1 -0.5166 0.1460 10.7424 22 6 3.4625 1.6626 7.3645 23 6 3.9557 1.0505 6.0484 24 8 3.3574 1.7464 4.9523 25 1 -0.3633 0.6168 0.8219 26 1 -0.3633 0.4033 -0.9452 27 1 -0.3632 -1.0203 0.1233 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1300 1.4426 -0.0108 31 1 0.4303 2.0995 -1.2720 32 1 1.8146 3.2161 -1.2019 33 1 3.1914 1.4882 -2.4152 34 1 1.7191 0.5041 -2.5950 35 1 1.8223 2.1016 -3.3732 36 1 2.4457 0.8948 2.5377 37 1 0.3205 2.3696 3.6709 38 1 1.7734 3.3979 3.6605 39 1 1.5110 3.3623 6.1407 40 1 0.2640 2.0903 6.1987 41 1 3.2303 1.8971 10.8286 42 1 3.8522 2.6753 7.4672 43 1 3.7997 1.0528 8.2028 44 1 5.0403 1.1410 5.9887 45 1 3.6747 -0.0019 6.0085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753645596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:25 Heat of formation + Delta-G solvation = -102.104075 kcal Electronic energy + Delta-G solvation = -23293.971785 eV Core-core repulsion = 19924.565532 eV Total energy + Delta-G solvation = -3369.406253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18230 -40.07275 -37.09252 -36.48018 -35.77050 -33.38570 -32.48737 -31.89607 -29.45354 -28.46454 -26.77599 -24.98796 -24.33775 -23.55112 -22.33806 -21.49705 -20.11530 -18.90005 -18.00391 -17.48923 -17.22033 -16.88109 -16.77051 -16.17002 -15.95596 -15.50808 -15.29317 -15.02669 -14.78387 -14.50294 -14.33909 -14.17771 -13.74516 -13.52710 -13.24636 -12.97343 -12.88167 -12.74251 -12.57951 -12.53332 -12.27163 -12.17288 -12.08164 -12.02440 -11.91377 -11.46797 -11.38117 -11.35300 -10.81251 -10.71811 -10.55738 -10.08722 -8.74182 -7.92088 -5.44079 1.46688 1.46770 1.56467 1.69084 2.18961 2.47146 2.76760 3.23639 3.47748 3.71754 3.83583 3.94016 3.98077 4.05659 4.22654 4.34109 4.39559 4.47264 4.50944 4.52076 4.60183 4.62789 4.70140 4.77132 4.80086 4.87686 4.88930 4.97287 5.04675 5.06977 5.23229 5.23643 5.28268 5.31537 5.36237 5.44122 5.54945 5.59109 5.60112 6.24917 6.32720 6.58590 7.05347 7.28083 7.71829 8.26442 9.13472 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.034116 B = 0.003209 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.543186 B = 8724.306722 C = 8939.190657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.103 4.103 4 C -0.106 4.106 5 C -0.147 4.147 6 C 0.513 3.487 7 O -0.589 6.589 8 N -0.713 5.713 9 C 0.141 3.859 10 C 0.081 3.919 11 H 0.070 0.930 12 C 0.116 3.884 13 N -0.614 5.614 14 C -0.267 4.267 15 H 0.072 0.928 16 C -0.050 4.050 17 N -0.937 5.937 18 Si 0.975 3.025 19 H -0.281 1.281 20 H -0.295 1.295 21 H -0.268 1.268 22 C 0.144 3.856 23 C 0.054 3.946 24 O -0.390 6.390 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.413 0.587 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.071 0.929 41 H 0.252 0.748 42 H -0.003 1.003 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 -6.708 -21.526 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C -0.124 4.124 4 C -0.144 4.144 5 C -0.204 4.204 6 C 0.302 3.698 7 O -0.469 6.469 8 N -0.364 5.364 9 C 0.016 3.984 10 C 0.022 3.978 11 H 0.088 0.912 12 C -0.010 4.010 13 N -0.338 5.338 14 C -0.397 4.397 15 H 0.090 0.910 16 C -0.245 4.245 17 N -0.583 5.583 18 Si 0.802 3.198 19 H -0.207 1.207 20 H -0.222 1.222 21 H -0.193 1.193 22 C 0.018 3.982 23 C -0.024 4.024 24 O -0.309 6.309 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.250 0.750 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.091 -5.886 -21.552 22.342 hybrid contribution -0.216 -0.245 1.718 1.749 sum -0.125 -6.131 -19.834 20.761 Atomic orbital electron populations 1.21862 0.96265 1.01904 1.01425 1.21569 0.95864 0.93034 1.04415 1.21508 1.02884 0.96790 0.91206 1.21349 1.00856 0.98813 0.93412 1.21793 1.01334 1.01226 0.96032 1.21324 0.79137 0.83799 0.85570 1.90671 1.40092 1.28549 1.87610 1.45889 1.53422 1.32247 1.04890 1.21131 0.98936 0.96073 0.82275 1.22617 0.82002 0.99304 0.93903 0.91216 1.21605 0.97168 0.95108 0.87143 1.44325 1.01919 1.69589 1.17983 1.19557 1.00719 1.32864 0.86564 0.91034 1.25934 0.99142 1.00031 0.99402 1.70161 1.24851 1.42968 1.20319 0.85162 0.78575 0.78018 0.78032 1.20722 1.22198 1.19287 1.21316 0.83453 0.97342 0.96090 1.23174 0.98049 0.95020 0.86163 1.87800 1.19428 1.75291 1.48377 0.95164 0.92021 0.91369 0.88223 0.90670 0.86655 0.92202 0.93276 0.91779 0.91268 0.92302 0.75043 0.89870 0.92406 0.96668 0.91070 0.93892 0.98471 0.91306 0.87293 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.22 71.98 0.66 -1.84 16 2 C -0.11 -1.43 5.35 30.59 0.16 -1.27 16 3 C -0.10 -1.75 2.51 -11.54 -0.03 -1.78 16 4 C -0.11 -1.88 4.51 30.60 0.14 -1.74 16 5 C -0.15 -1.69 9.50 71.98 0.68 -1.00 16 6 C 0.51 13.19 5.81 87.66 0.51 13.70 16 7 O -0.59 -20.22 15.93 -3.05 -0.05 -20.27 16 8 N -0.71 -17.48 5.40 -463.05 -2.50 -19.98 16 9 C 0.14 4.16 5.35 86.38 0.46 4.63 16 10 C 0.08 2.72 2.81 30.69 0.09 2.80 16 11 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 12 C 0.12 4.85 6.02 86.35 0.52 5.37 16 13 N -0.61 -30.85 3.04 -697.55 -2.12 -32.97 16 14 C -0.27 -14.50 9.65 84.03 0.81 -13.69 16 15 H 0.07 3.74 7.86 -2.91 -0.02 3.72 16 16 C -0.05 -2.73 5.04 84.86 0.43 -2.30 16 17 N -0.94 -54.91 11.04 21.65 0.24 -54.67 16 18 Si 0.97 44.00 29.57 68.60 2.03 46.03 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.14 6.90 5.41 86.35 0.47 7.37 16 23 C 0.05 1.95 6.98 72.08 0.50 2.46 16 24 O -0.39 -13.83 10.34 -148.98 -1.54 -15.37 16 25 H 0.03 0.64 7.01 -2.39 -0.02 0.62 16 26 H 0.06 0.94 6.71 -2.39 -0.02 0.92 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.10 0.86 6.72 -2.39 -0.02 0.85 16 29 H 0.07 0.87 7.55 -2.38 -0.02 0.85 16 30 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.19 6.34 -2.39 -0.02 1.18 16 32 H 0.05 1.05 7.97 -2.39 -0.02 1.03 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.63 6.88 -2.38 -0.02 0.61 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.41 8.29 7.88 -92.71 -0.73 7.56 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 2.81 7.96 -2.38 -0.02 2.79 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.07 3.66 6.18 -2.38 -0.01 3.64 16 44 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 45 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -68.42 351.71 1.70 -66.72 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.23 Total: 17.83 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 5.41 Total: 12.68 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -4.38 Total: -107.62 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.59 Total: -35.64 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.42 1.70 -66.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753645596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.383 kcal (2) G-P(sol) polarization free energy of solvation -68.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds