Wall clock time and date at job start Tue Mar 31 2020 07:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.48358 * 2 1 4 4 C 1.53092 * 109.48223 * 239.97018 * 2 1 3 5 5 C 1.53179 * 109.16388 * 182.39591 * 4 2 1 6 6 N 1.46503 * 109.53871 * 176.85211 * 5 4 2 7 7 C 1.34783 * 119.99449 * 155.18009 * 6 5 4 8 8 O 1.21590 * 119.99935 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99768 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46678 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47258 * 119.99423 * 17 15 13 20 20 H 1.48493 * 109.47346 * 240.00028 * 17 15 13 21 21 C 1.53173 * 109.10648 * 56.94109 * 5 4 2 22 22 C 1.53101 * 109.16155 * 303.15054 * 21 5 4 23 23 H 1.08999 * 109.48441 * 177.50391 * 22 21 5 24 24 C 1.53000 * 109.41451 * 297.49369 * 22 21 5 25 25 O 1.42905 * 109.48958 * 120.03020 * 2 1 3 26 26 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47008 * 300.02125 * 1 2 3 28 28 H 1.08998 * 109.47145 * 60.02500 * 1 2 3 29 29 H 1.09009 * 109.51611 * 62.49563 * 4 2 1 30 30 H 1.08999 * 109.57720 * 302.34159 * 4 2 1 31 31 H 1.08996 * 109.54483 * 297.02871 * 5 4 2 32 32 H 0.96992 * 120.00655 * 335.17736 * 6 5 4 33 33 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 35 35 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 36 36 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 37 37 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 38 38 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 39 39 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 40 40 H 0.97000 * 119.99425 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.52562 * 62.97280 * 21 5 4 42 42 H 1.09004 * 109.52122 * 183.15386 * 21 5 4 43 43 H 1.09001 * 109.47309 * 179.97438 * 24 22 21 44 44 H 1.09002 * 109.46772 * 299.98625 * 24 22 21 45 45 H 1.08997 * 109.47396 * 59.98202 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5712 -0.7706 -1.2123 6 7 4.0658 -1.5256 -2.3662 7 6 5.3091 -1.3011 -2.8356 8 8 6.0200 -0.4716 -2.3017 9 7 5.7644 -1.9960 -3.8969 10 6 7.1160 -1.7524 -4.4068 11 6 7.3806 -2.6645 -5.6064 12 6 8.7924 -2.4105 -6.1386 13 6 9.0533 -3.3092 -7.3197 14 1 8.2887 -3.9935 -7.6569 15 6 10.2680 -3.2580 -7.9700 16 7 11.1988 -2.4244 -7.5597 17 14 10.5912 -4.3716 -9.4346 18 1 9.3924 -5.2090 -9.6935 19 1 10.8845 -3.5428 -10.6314 20 1 11.7534 -5.2485 -9.1428 21 6 4.0197 -1.4585 0.0807 22 6 3.4310 -0.7091 1.2790 23 1 3.7104 -1.2200 2.2003 24 6 3.9760 0.7203 1.3026 25 8 2.0068 -0.6742 1.1663 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8897 28 1 -0.3633 0.5134 -0.8902 29 1 1.7147 -0.1843 -2.1398 30 1 1.6445 -1.7375 -1.2720 31 1 3.9689 0.2438 -1.2426 32 1 3.4986 -2.1871 -2.7923 33 1 5.1974 -2.6580 -4.3226 34 1 7.8435 -1.9624 -3.6227 35 1 7.2054 -0.7110 -4.7160 36 1 7.2910 -3.7060 -5.2977 37 1 6.6531 -2.4540 -6.3903 38 1 8.8824 -1.3690 -6.4472 39 1 9.5197 -2.6212 -5.3545 40 1 12.0533 -2.3881 -8.0175 41 1 3.6649 -2.4891 0.0871 42 1 5.1080 -1.4467 0.1409 43 1 3.5571 1.2549 2.1552 44 1 5.0623 0.6935 1.3885 45 1 3.6970 1.2309 0.3810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179285423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:02 Heat of formation + Delta-G solvation = -105.984868 kcal Electronic energy + Delta-G solvation = -22463.145969 eV Core-core repulsion = 19093.571432 eV Total energy + Delta-G solvation = -3369.574537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62227 -39.36731 -35.85700 -34.93057 -33.71267 -33.33604 -32.10260 -30.91256 -29.11766 -26.99510 -26.56689 -23.61370 -23.03410 -22.28806 -20.78751 -20.34208 -19.75109 -18.05953 -16.95500 -16.60279 -16.31176 -15.85171 -15.36788 -15.03092 -14.82528 -14.45108 -14.34807 -14.01764 -13.74399 -13.63865 -13.22151 -12.95865 -12.39446 -12.29174 -12.24003 -12.07042 -11.81068 -11.80059 -11.59005 -11.32809 -11.17554 -10.92424 -10.72905 -10.57071 -10.48670 -10.16405 -9.86409 -9.78836 -9.43268 -9.18808 -9.11272 -8.61049 -8.37784 -6.02239 -4.05224 2.77001 3.29524 3.35220 3.37013 3.40475 3.42711 4.29788 4.32593 4.43834 4.44558 4.54028 4.74368 4.80026 4.94487 5.04292 5.07361 5.12556 5.21475 5.33605 5.37042 5.44639 5.58348 5.63057 5.67704 5.74441 5.79138 5.81294 5.85814 5.87043 6.04447 6.18420 6.46045 6.53116 6.62288 6.80714 6.96306 7.02207 7.07949 7.63825 7.76438 7.96855 8.15095 8.37778 8.75205 9.01717 9.58958 11.09108 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.044505 B = 0.002352 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.985108 B =11901.405990 C =12249.087349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.064 0.936 4 C -0.157 4.157 5 C 0.163 3.837 6 N -0.747 5.747 7 C 0.700 3.300 8 O -0.593 6.593 9 N -0.742 5.742 10 C 0.135 3.865 11 C -0.120 4.120 12 C 0.023 3.977 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.162 4.162 22 C 0.092 3.908 23 H 0.104 0.896 24 C -0.187 4.187 25 O -0.375 6.375 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.394 0.606 33 H 0.393 0.607 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.941 3.573 16.276 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.082 0.918 4 C -0.196 4.196 5 C 0.057 3.943 6 N -0.403 5.403 7 C 0.400 3.600 8 O -0.471 6.471 9 N -0.396 5.396 10 C 0.012 3.988 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.201 4.201 22 C 0.034 3.966 23 H 0.122 0.878 24 C -0.245 4.245 25 O -0.294 6.294 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.227 0.773 33 H 0.227 0.773 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.183 4.334 16.841 27.407 hybrid contribution 0.050 -1.173 -1.504 1.908 sum -21.133 3.161 15.337 26.302 Atomic orbital electron populations 1.21760 0.92842 1.02998 1.02530 1.22025 0.95054 0.95571 0.84488 0.91767 1.22548 0.94877 1.02704 0.99446 1.20791 0.92706 0.96479 0.84280 1.45204 1.15334 1.45040 1.34682 1.16044 0.81606 0.81715 0.80655 1.90911 1.57036 1.37598 1.61535 1.45402 1.18329 1.43199 1.32662 1.21506 0.80267 1.00393 0.96640 1.21886 1.01624 0.97674 0.94626 1.19035 0.89087 0.97409 0.95899 1.21240 0.99486 1.21424 1.13803 0.92614 1.25040 0.96277 0.95697 0.97535 1.69981 1.05559 1.36795 1.40929 0.86523 0.78188 0.80594 0.82604 1.19779 1.20998 1.21003 1.22646 1.02485 1.00265 0.94667 1.22148 0.80377 0.95753 0.98362 0.87782 1.22469 1.02418 0.97036 1.02554 1.87980 1.20961 1.77626 1.42857 0.91774 0.91711 0.91044 0.90231 0.90476 0.89107 0.77273 0.77348 0.91989 0.91992 0.92790 0.92786 0.96241 0.96244 0.92983 0.91004 0.89954 0.91871 0.90990 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.57 37.16 0.36 -0.51 16 2 C 0.09 0.67 2.94 -26.68 -0.08 0.59 16 3 H 0.06 0.49 6.34 -51.93 -0.33 0.16 16 4 C -0.16 -1.18 4.89 -26.59 -0.13 -1.31 16 5 C 0.16 1.64 2.23 -67.75 -0.15 1.49 16 6 N -0.75 -8.08 5.09 -58.49 -0.30 -8.38 16 7 C 0.70 10.62 8.53 -86.91 -0.74 9.87 16 8 O -0.59 -11.44 16.01 5.29 0.08 -11.36 16 9 N -0.74 -10.76 5.56 -65.22 -0.36 -11.12 16 10 C 0.14 2.42 5.67 -4.04 -0.02 2.40 16 11 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 14 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.16 -1.60 5.22 -26.59 -0.14 -1.74 16 22 C 0.09 0.81 3.91 -26.68 -0.10 0.70 16 23 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 24 C -0.19 -1.59 8.65 37.16 0.32 -1.27 16 25 O -0.37 -3.53 10.24 -35.23 -0.36 -3.89 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.09 6.06 -51.93 -0.31 0.78 16 32 H 0.39 3.16 8.62 -40.82 -0.35 2.80 16 33 H 0.39 4.53 8.49 -40.82 -0.35 4.19 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.56 4.98 -51.93 -0.26 0.30 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -33.04 358.28 -9.11 -42.15 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.91 Total: 2.06 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.38 Total: -5.21 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.08 Total: -45.64 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.28 Total: -15.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.04 -9.11 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179285423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.832 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds