Wall clock time and date at job start Tue Mar 31 2020 07:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.48358 * 2 1 4 4 C 1.53092 * 109.48223 * 239.97018 * 2 1 3 5 5 C 1.53179 * 109.16388 * 182.39591 * 4 2 1 6 6 N 1.46503 * 109.53871 * 176.85211 * 5 4 2 7 7 C 1.34783 * 119.99449 * 155.18009 * 6 5 4 8 8 O 1.21590 * 119.99935 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99768 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46678 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47258 * 119.99423 * 17 15 13 20 20 H 1.48493 * 109.47346 * 240.00028 * 17 15 13 21 21 C 1.53173 * 109.10648 * 56.94109 * 5 4 2 22 22 C 1.53101 * 109.16155 * 303.15054 * 21 5 4 23 23 H 1.08999 * 109.48441 * 177.50391 * 22 21 5 24 24 C 1.53000 * 109.41451 * 297.49369 * 22 21 5 25 25 O 1.42905 * 109.48958 * 120.03020 * 2 1 3 26 26 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47008 * 300.02125 * 1 2 3 28 28 H 1.08998 * 109.47145 * 60.02500 * 1 2 3 29 29 H 1.09009 * 109.51611 * 62.49563 * 4 2 1 30 30 H 1.08999 * 109.57720 * 302.34159 * 4 2 1 31 31 H 1.08996 * 109.54483 * 297.02871 * 5 4 2 32 32 H 0.96992 * 120.00655 * 335.17736 * 6 5 4 33 33 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 35 35 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 36 36 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 37 37 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 38 38 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 39 39 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 40 40 H 0.97000 * 119.99425 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.52562 * 62.97280 * 21 5 4 42 42 H 1.09004 * 109.52122 * 183.15386 * 21 5 4 43 43 H 1.09001 * 109.47309 * 179.97438 * 24 22 21 44 44 H 1.09002 * 109.46772 * 299.98625 * 24 22 21 45 45 H 1.08997 * 109.47396 * 59.98202 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5712 -0.7706 -1.2123 6 7 4.0658 -1.5256 -2.3662 7 6 5.3091 -1.3011 -2.8356 8 8 6.0200 -0.4716 -2.3017 9 7 5.7644 -1.9960 -3.8969 10 6 7.1160 -1.7524 -4.4068 11 6 7.3806 -2.6645 -5.6064 12 6 8.7924 -2.4105 -6.1386 13 6 9.0533 -3.3092 -7.3197 14 1 8.2887 -3.9935 -7.6569 15 6 10.2680 -3.2580 -7.9700 16 7 11.1988 -2.4244 -7.5597 17 14 10.5912 -4.3716 -9.4346 18 1 9.3924 -5.2090 -9.6935 19 1 10.8845 -3.5428 -10.6314 20 1 11.7534 -5.2485 -9.1428 21 6 4.0197 -1.4585 0.0807 22 6 3.4310 -0.7091 1.2790 23 1 3.7104 -1.2200 2.2003 24 6 3.9760 0.7203 1.3026 25 8 2.0068 -0.6742 1.1663 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8897 28 1 -0.3633 0.5134 -0.8902 29 1 1.7147 -0.1843 -2.1398 30 1 1.6445 -1.7375 -1.2720 31 1 3.9689 0.2438 -1.2426 32 1 3.4986 -2.1871 -2.7923 33 1 5.1974 -2.6580 -4.3226 34 1 7.8435 -1.9624 -3.6227 35 1 7.2054 -0.7110 -4.7160 36 1 7.2910 -3.7060 -5.2977 37 1 6.6531 -2.4540 -6.3903 38 1 8.8824 -1.3690 -6.4472 39 1 9.5197 -2.6212 -5.3545 40 1 12.0533 -2.3881 -8.0175 41 1 3.6649 -2.4891 0.0871 42 1 5.1080 -1.4467 0.1409 43 1 3.5571 1.2549 2.1552 44 1 5.0623 0.6935 1.3885 45 1 3.6970 1.2309 0.3810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179285423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:01 Heat of formation + Delta-G solvation = -129.035859 kcal Electronic energy + Delta-G solvation = -22464.145535 eV Core-core repulsion = 19093.571432 eV Total energy + Delta-G solvation = -3370.574103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52956 -40.39220 -37.17466 -36.15414 -35.19302 -34.32975 -33.39439 -32.31501 -29.93556 -28.34185 -27.65840 -25.16193 -23.90344 -23.25806 -22.30383 -21.67911 -20.51686 -19.21525 -18.54788 -17.72730 -17.31382 -16.84489 -16.68467 -16.45256 -15.90312 -15.74249 -15.50561 -15.19309 -14.82242 -14.59438 -14.25898 -13.88400 -13.72482 -13.59425 -13.48456 -12.97285 -12.84247 -12.78136 -12.70666 -12.54658 -12.35679 -12.33526 -12.02863 -11.91833 -11.68089 -11.65968 -11.37052 -11.20549 -11.07195 -10.56162 -10.49203 -10.35641 -9.77851 -8.19623 -6.31010 1.41814 1.41977 1.55135 1.66914 2.13172 2.41904 2.78734 3.14226 3.27619 3.63300 3.72227 3.87238 4.03380 4.09231 4.16822 4.23349 4.30123 4.36168 4.38200 4.50952 4.56199 4.59285 4.78561 4.83460 4.92981 4.95143 4.95903 5.01693 5.07785 5.09405 5.15429 5.17109 5.30004 5.36743 5.46713 5.51840 5.54935 5.71166 5.84488 6.01032 6.22716 6.30588 6.86588 7.11165 7.38585 7.57864 8.92778 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.044505 B = 0.002352 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.985108 B =11901.405990 C =12249.087349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.063 0.937 4 C -0.147 4.147 5 C 0.160 3.840 6 N -0.727 5.727 7 C 0.697 3.303 8 O -0.638 6.638 9 N -0.730 5.730 10 C 0.150 3.850 11 C -0.100 4.100 12 C 0.023 3.977 13 C -0.539 4.539 14 H 0.067 0.933 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.157 4.157 22 C 0.094 3.906 23 H 0.114 0.886 24 C -0.185 4.185 25 O -0.384 6.384 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.412 0.588 33 H 0.412 0.588 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.068 0.932 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.381 2.205 15.704 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.023 3.977 3 H 0.081 0.919 4 C -0.185 4.185 5 C 0.055 3.945 6 N -0.383 5.383 7 C 0.397 3.603 8 O -0.519 6.519 9 N -0.386 5.386 10 C 0.026 3.974 11 C -0.138 4.138 12 C -0.015 4.015 13 C -0.577 4.577 14 H 0.085 0.915 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.182 1.182 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.196 4.196 22 C 0.036 3.964 23 H 0.132 0.868 24 C -0.242 4.242 25 O -0.304 6.304 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.701 2.927 16.268 28.895 hybrid contribution 0.792 -0.704 -1.273 1.656 sum -22.910 2.223 14.995 27.471 Atomic orbital electron populations 1.21764 0.91306 1.03338 1.03360 1.22201 0.96216 0.95378 0.83929 0.91897 1.22494 0.92380 1.03649 0.99998 1.20888 0.94530 0.95220 0.83885 1.45029 1.13858 1.44937 1.34444 1.16199 0.82478 0.81193 0.80435 1.90888 1.58618 1.39571 1.62851 1.45038 1.17237 1.43649 1.32680 1.21060 0.81818 0.99028 0.95539 1.21581 0.98119 0.98708 0.95360 1.18952 0.92159 0.95499 0.94889 1.21706 0.99904 1.21707 1.14365 0.91497 1.26045 0.96121 0.97283 1.00821 1.70125 1.06165 1.38675 1.42630 0.85350 0.78461 0.78485 0.78439 1.18161 1.20582 1.20614 1.22573 1.00962 1.00816 0.95213 1.22144 0.80389 0.95679 0.98214 0.86816 1.22439 1.01916 0.97150 1.02710 1.87977 1.20825 1.77866 1.43712 0.91640 0.91723 0.89445 0.88973 0.89289 0.91267 0.75168 0.75193 0.93648 0.93583 0.91386 0.91317 0.98945 0.98984 0.92826 0.90350 0.92389 0.90867 0.91815 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.57 71.98 0.69 -0.66 16 2 C 0.08 1.09 2.94 30.63 0.09 1.18 16 3 H 0.06 0.87 6.34 -2.39 -0.02 0.85 16 4 C -0.15 -1.88 4.89 30.68 0.15 -1.73 16 5 C 0.16 3.06 2.23 45.11 0.10 3.16 16 6 N -0.73 -14.63 5.09 -457.23 -2.33 -16.96 16 7 C 0.70 20.76 8.53 179.05 1.53 22.29 16 8 O -0.64 -25.16 16.01 -4.00 -0.06 -25.23 16 9 N -0.73 -20.34 5.56 -478.52 -2.66 -23.00 16 10 C 0.15 5.40 5.67 86.38 0.49 5.89 16 11 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 12 C 0.02 1.19 4.97 29.85 0.15 1.34 16 13 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 14 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 15 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 16 N -0.94 -57.35 13.29 21.45 0.28 -57.06 16 17 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C -0.16 -3.02 5.22 30.69 0.16 -2.86 16 22 C 0.09 1.58 3.91 30.63 0.12 1.70 16 23 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 24 C -0.18 -3.12 8.65 71.98 0.62 -2.50 16 25 O -0.38 -6.62 10.24 -148.98 -1.53 -8.15 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.67 6.06 -2.39 -0.01 1.66 16 32 H 0.41 5.46 8.62 -92.71 -0.80 4.66 16 33 H 0.41 8.45 8.49 -92.71 -0.79 7.66 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.03 4.98 -2.39 -0.01 1.02 16 Total: -1.00 -72.41 358.28 0.08 -72.33 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.61 Total: 17.76 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 4.96 Total: -5.53 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -4.70 Total: -97.01 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.59 Total: -33.38 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.41 0.08 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179285423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.708 kcal (2) G-P(sol) polarization free energy of solvation -72.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds