Wall clock time and date at job start Tue Mar 31 2020 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47776 * 2 1 4 4 C 1.52997 * 109.47062 * 120.00680 * 2 1 3 5 5 C 1.53006 * 109.46953 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46750 * 299.99549 * 5 4 2 7 7 C 1.52993 * 109.47236 * 60.00208 * 6 5 4 8 8 C 1.53004 * 109.47264 * 299.99927 * 7 6 5 9 9 H 1.08994 * 109.47152 * 179.97438 * 8 7 6 10 10 O 1.42894 * 109.46942 * 299.99934 * 8 7 6 11 11 C 1.42902 * 114.00153 * 269.99882 * 10 8 7 12 12 C 1.53002 * 109.47456 * 179.97438 * 11 10 8 13 13 N 1.46507 * 109.46661 * 65.00178 * 12 11 10 14 14 C 1.34775 * 119.99844 * 180.02562 * 13 12 11 15 15 O 1.21587 * 119.99651 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00179 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00237 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46953 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00193 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99398 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99350 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00608 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47326 * 270.00340 * 22 20 18 24 24 H 1.48506 * 109.46545 * 30.00090 * 22 20 18 25 25 H 1.48498 * 109.47210 * 149.99801 * 22 20 18 26 26 H 1.08997 * 109.47776 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46757 * 300.00130 * 1 2 3 28 28 H 1.09007 * 109.46965 * 59.99257 * 1 2 3 29 29 H 1.09002 * 109.46673 * 299.99241 * 4 2 1 30 30 H 1.08996 * 109.47417 * 59.99629 * 4 2 1 31 31 H 1.08996 * 109.47244 * 59.99667 * 5 4 2 32 32 H 1.08994 * 109.46969 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.46615 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47344 * 300.00057 * 6 5 4 35 35 H 1.08998 * 109.47182 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.47116 * 59.99614 * 7 6 5 37 37 H 1.09003 * 109.47138 * 60.00104 * 11 10 8 38 38 H 1.09000 * 109.46896 * 300.00197 * 11 10 8 39 39 H 1.09001 * 109.46967 * 305.00401 * 12 11 10 40 40 H 1.08996 * 109.47205 * 184.99675 * 12 11 10 41 41 H 0.96996 * 120.00113 * 359.97438 * 13 12 11 42 42 H 0.97010 * 119.99854 * 359.97438 * 16 14 13 43 43 H 1.09000 * 109.47175 * 59.99842 * 17 16 14 44 44 H 1.08993 * 109.47452 * 299.99632 * 17 16 14 45 45 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5700 -0.7219 1.2488 6 6 4.0794 -1.4435 -0.0006 7 6 3.5694 -0.7222 -1.2497 8 6 2.0394 -0.7216 -1.2493 9 1 1.6760 -0.2073 -2.1390 10 8 1.5625 -2.0686 -1.2491 11 6 1.3682 -2.6167 -2.5545 12 6 0.8599 -4.0547 -2.4334 13 7 -0.4671 -4.0529 -1.8124 14 6 -1.1148 -5.2161 -1.6033 15 8 -0.5980 -6.2670 -1.9305 16 7 -2.3356 -5.2145 -1.0325 17 6 -3.0400 -6.4789 -0.8057 18 6 -4.3731 -6.2023 -0.1595 19 1 -4.6665 -5.1864 0.0599 20 6 -5.2185 -7.2464 0.1506 21 7 -6.3821 -7.0050 0.7141 22 14 -4.7114 -9.0036 -0.2294 23 1 -5.1681 -9.3663 -1.5950 24 1 -3.2327 -9.1190 -0.1550 25 1 -5.3300 -9.9223 0.7598 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.6767 -0.2075 2.1391 30 1 1.6766 -1.7490 1.2491 31 1 3.9337 0.3056 1.2486 32 1 3.9333 -1.2354 2.1389 33 1 5.1694 -1.4443 -0.0005 34 1 3.7157 -2.4710 -0.0004 35 1 3.9326 -1.2360 -2.1397 36 1 3.9331 0.3053 -1.2499 37 1 2.3144 -2.6106 -3.0956 38 1 0.6365 -2.0165 -3.0952 39 1 1.5486 -4.6329 -1.8174 40 1 0.7962 -4.5023 -3.4253 41 1 -0.8791 -3.2146 -1.5511 42 1 -2.7481 -4.3760 -0.7719 43 1 -2.4440 -7.1144 -0.1507 44 1 -3.1957 -6.9841 -1.7588 45 1 -6.9771 -7.7395 0.9320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334075929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:39 Heat of formation + Delta-G solvation = -129.910472 kcal Electronic energy + Delta-G solvation = -22970.974230 eV Core-core repulsion = 19600.362201 eV Total energy + Delta-G solvation = -3370.612029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94752 -40.39773 -37.52579 -36.19304 -35.37647 -34.37015 -33.44917 -31.34305 -30.44068 -29.01533 -27.00218 -24.50693 -23.46098 -23.20110 -22.10617 -21.90840 -20.49740 -19.93760 -18.32972 -17.71366 -17.19747 -16.71920 -16.50838 -16.36025 -16.15942 -15.52209 -15.13587 -14.96104 -14.93630 -14.45809 -14.39147 -14.11181 -14.03696 -13.85347 -13.43086 -13.06023 -12.98238 -12.76194 -12.68017 -12.46819 -12.34464 -12.11476 -11.91671 -11.70747 -11.64294 -11.39239 -11.28934 -11.22641 -10.90552 -10.79951 -10.28916 -10.24667 -9.62005 -8.38815 -6.45472 1.34432 1.36048 1.50075 1.91303 2.24087 2.30172 2.75196 2.96791 3.53235 3.75277 3.86204 3.92063 4.06638 4.23988 4.29895 4.30401 4.45102 4.50623 4.60026 4.63582 4.66243 4.68191 4.75711 4.85021 4.91898 4.97609 5.01287 5.06733 5.11410 5.14628 5.25840 5.26611 5.34206 5.38880 5.45782 5.49692 5.54545 5.59132 5.66260 5.99640 6.30732 6.41213 6.56503 7.15583 7.28537 7.69283 8.76009 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.003200 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.852714 B = 8749.143368 C = 9228.776907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.093 0.907 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.138 4.138 8 C 0.091 3.909 9 H 0.074 0.926 10 O -0.387 6.387 11 C 0.059 3.941 12 C 0.142 3.858 13 N -0.728 5.728 14 C 0.693 3.307 15 O -0.647 6.647 16 N -0.723 5.723 17 C 0.252 3.748 18 C -0.545 4.545 19 H 0.059 0.941 20 C 0.027 3.973 21 N -0.931 5.931 22 Si 0.938 3.062 23 H -0.263 1.263 24 H -0.262 1.262 25 H -0.272 1.272 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.409 0.591 42 H 0.404 0.596 43 H 0.008 0.992 44 H 0.010 0.990 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.239 18.783 -4.889 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.111 0.889 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.152 4.152 7 C -0.175 4.175 8 C 0.033 3.967 9 H 0.092 0.908 10 O -0.307 6.307 11 C -0.018 4.018 12 C 0.018 3.982 13 N -0.385 5.385 14 C 0.393 3.607 15 O -0.530 6.530 16 N -0.376 5.376 17 C 0.127 3.873 18 C -0.583 4.583 19 H 0.077 0.923 20 C -0.174 4.174 21 N -0.570 5.570 22 Si 0.762 3.238 23 H -0.188 1.188 24 H -0.186 1.186 25 H -0.197 1.197 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.244 0.756 42 H 0.239 0.761 43 H 0.026 0.974 44 H 0.028 0.972 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.506 17.651 -4.944 28.258 hybrid contribution -0.593 -0.220 0.181 0.658 sum 20.913 17.431 -4.763 27.638 Atomic orbital electron populations 1.21777 0.95040 1.01710 1.01854 1.21245 0.95866 0.99161 0.93938 0.88872 1.21494 0.95796 1.00260 0.97401 1.21513 0.95261 1.00913 0.97721 1.21395 0.99885 0.99273 0.94660 1.22018 0.95396 1.01795 0.98311 1.22233 0.93464 0.82550 0.98422 0.90818 1.87996 1.86658 1.28665 1.27346 1.22764 1.01113 0.92145 0.85758 1.21269 0.82020 0.96882 0.98048 1.44882 1.19970 1.06748 1.66858 1.16250 0.81215 0.84516 0.78758 1.90823 1.69324 1.32451 1.60432 1.45106 1.17100 1.10964 1.64470 1.18936 0.90585 0.82853 0.94880 1.21278 1.00701 0.95257 1.41095 0.92333 1.25585 0.94442 1.03414 0.93917 1.69983 1.10217 1.34120 1.42708 0.85843 0.79411 0.79539 0.79018 1.18833 1.18628 1.19713 0.93420 0.92698 0.92028 0.92176 0.93524 0.91050 0.92641 0.91748 0.93373 0.91454 0.89809 0.89766 0.91085 0.92920 0.90313 0.75555 0.76129 0.97405 0.97222 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.05 71.98 0.65 -1.64 16 2 C -0.08 -1.18 2.55 -10.79 -0.03 -1.21 16 3 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 4 C -0.11 -1.91 5.06 30.60 0.15 -1.75 16 5 C -0.12 -1.71 5.92 30.60 0.18 -1.53 16 6 C -0.11 -1.72 5.78 30.59 0.18 -1.54 16 7 C -0.14 -1.65 5.63 30.59 0.17 -1.48 16 8 C 0.09 1.24 2.35 30.60 0.07 1.31 16 9 H 0.07 0.79 7.79 -2.39 -0.02 0.77 16 10 O -0.39 -7.10 7.91 -148.98 -1.18 -8.28 16 11 C 0.06 0.92 5.88 71.98 0.42 1.35 16 12 C 0.14 3.38 6.06 86.38 0.52 3.91 16 13 N -0.73 -21.11 5.51 -478.53 -2.64 -23.74 16 14 C 0.69 28.20 8.57 179.06 1.53 29.73 16 15 O -0.65 -31.71 16.34 -3.99 -0.07 -31.78 16 16 N -0.72 -30.88 5.55 -482.31 -2.68 -33.56 16 17 C 0.25 12.94 4.50 85.63 0.39 13.32 16 18 C -0.55 -30.94 9.83 25.60 0.25 -30.69 16 19 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 20 C 0.03 1.54 5.47 84.66 0.46 2.00 16 21 N -0.93 -56.41 13.96 21.45 0.30 -56.11 16 22 Si 0.94 45.06 27.47 68.60 1.88 46.95 16 23 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.05 7.68 -2.39 -0.02 1.03 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.95 7.68 -2.39 -0.02 0.93 16 35 H 0.07 0.75 7.87 -2.39 -0.02 0.73 16 36 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.08 0.98 7.87 -2.39 -0.02 0.96 16 38 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.41 9.80 8.49 -92.71 -0.79 9.01 16 42 H 0.40 15.17 8.34 -92.70 -0.77 14.40 16 43 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 44 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 45 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -71.20 357.95 -0.06 -71.26 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.65 Total: 23.48 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 4.96 Total: 11.78 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -5.01 Total: -113.41 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -1.24 Total: -40.06 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -71.20 -0.06 -71.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334075929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.646 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds