Wall clock time and date at job start Tue Mar 31 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99459 * 2 1 4 4 C 1.53004 * 109.46715 * 185.41383 * 3 2 1 5 5 C 1.52994 * 109.47731 * 305.41201 * 3 2 1 6 6 N 1.46504 * 109.46948 * 300.00472 * 5 3 2 7 7 C 1.34776 * 119.99783 * 179.97438 * 6 5 3 8 8 O 1.21589 * 120.00011 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99748 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99683 * 180.02562 * 9 7 6 11 11 C 1.53011 * 109.46894 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46863 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46839 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00138 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00008 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99784 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47076 * 59.99765 * 17 15 13 19 19 H 1.48504 * 109.47100 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47248 * 299.99760 * 17 15 13 21 21 C 1.53004 * 109.47159 * 65.41564 * 3 2 1 22 22 C 1.52998 * 117.51704 * 112.11957 * 21 3 2 23 23 C 1.52996 * 60.00061 * 107.47970 * 22 21 3 24 24 H 1.09001 * 109.47307 * 65.21805 * 1 2 3 25 25 H 1.09000 * 109.47171 * 185.21606 * 1 2 3 26 26 H 1.09001 * 109.47567 * 305.21598 * 1 2 3 27 27 H 1.09008 * 109.47044 * 299.99914 * 4 3 2 28 28 H 1.08993 * 109.47458 * 60.00095 * 4 3 2 29 29 H 1.08999 * 109.47064 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47218 * 59.99964 * 5 3 2 31 31 H 1.08999 * 109.47380 * 180.02562 * 5 3 2 32 32 H 0.96990 * 120.00310 * 359.97438 * 6 5 3 33 33 H 0.96995 * 120.00507 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.47126 * 299.99348 * 10 9 7 35 35 H 1.08999 * 109.47676 * 59.99933 * 10 9 7 36 36 H 1.08996 * 109.46743 * 299.99822 * 11 10 9 37 37 H 1.08999 * 109.46832 * 59.99638 * 11 10 9 38 38 H 1.09006 * 109.47569 * 300.00188 * 12 11 10 39 39 H 1.09000 * 109.46974 * 60.00186 * 12 11 10 40 40 H 0.96996 * 119.99620 * 180.02562 * 16 15 13 41 41 H 1.09000 * 115.54660 * 326.42050 * 21 3 2 42 42 H 1.09002 * 117.49845 * 214.96921 * 22 21 3 43 43 H 1.09001 * 117.49931 * 359.97438 * 22 21 3 44 44 H 1.09004 * 117.50314 * 252.51075 * 23 22 21 45 45 H 1.09004 * 117.50011 * 107.48605 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5295 1.1874 -0.1361 5 6 1.4540 2.1115 -1.1756 6 7 1.7804 1.4316 -2.4316 7 6 1.3881 1.9623 -3.6067 8 8 0.7630 3.0050 -3.6244 9 7 1.6880 1.3365 -4.7622 10 6 1.2620 1.9137 -6.0396 11 6 1.7270 1.0135 -7.1862 12 6 1.2817 1.6159 -8.5202 13 6 1.7401 0.7297 -9.6495 14 1 2.2941 -0.1727 -9.4370 15 6 1.4532 1.0714 -10.9542 16 7 0.7790 2.1706 -11.2129 17 14 2.0209 -0.0275 -12.3540 18 1 1.4231 -1.3777 -12.1970 19 1 1.5888 0.5572 -13.6488 20 1 3.5018 -0.1359 -12.3289 21 6 1.6692 2.0155 1.3118 22 6 2.8167 2.2900 2.2859 23 6 2.1894 3.4422 1.4987 24 1 -0.3634 0.4308 -0.9330 25 1 -0.3633 -1.0234 0.0934 26 1 -0.3634 0.5926 0.8396 27 1 3.9258 0.6132 0.7015 28 1 3.7724 0.6816 -1.0705 29 1 3.9728 2.1831 -0.1357 30 1 0.3716 2.1956 -1.0787 31 1 1.8976 3.1071 -1.1758 32 1 2.2787 0.5996 -2.4175 33 1 2.1863 0.5045 -4.7481 34 1 0.1751 1.9936 -6.0578 35 1 1.7012 2.9046 -6.1551 36 1 2.8139 0.9340 -7.1678 37 1 1.2882 0.0224 -7.0709 38 1 0.1946 1.6952 -8.5384 39 1 1.7202 2.6071 -8.6357 40 1 0.5769 2.4108 -12.1307 41 1 0.6947 1.7753 1.7368 42 1 2.5970 2.2304 3.3519 43 1 3.8147 1.9643 1.9926 44 1 2.7747 3.8749 0.6873 45 1 1.5570 4.1407 2.0468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361494708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:27 Heat of formation + Delta-G solvation = -63.558856 kcal Electronic energy + Delta-G solvation = -22437.189531 eV Core-core repulsion = 19069.454724 eV Total energy + Delta-G solvation = -3367.734807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55283 -39.30852 -36.74028 -35.51063 -34.43732 -33.26225 -31.48676 -30.72933 -27.78870 -26.59018 -26.23262 -23.98131 -22.90156 -22.49368 -20.80649 -20.36288 -19.55793 -18.08826 -17.53605 -16.53735 -16.12393 -15.80856 -15.71151 -15.37722 -15.07325 -14.49425 -14.17129 -14.07199 -13.88925 -13.77397 -13.27736 -12.70224 -12.65941 -12.26950 -12.23133 -12.02556 -11.79010 -11.64695 -11.57535 -11.33716 -10.87011 -10.80124 -10.69683 -10.60655 -10.35858 -10.10993 -9.87498 -9.83280 -9.41626 -9.17543 -9.11848 -8.56257 -8.35317 -6.00124 -4.03191 2.75825 3.22225 3.33118 3.37781 3.39815 3.40440 3.58143 4.11096 4.33207 4.43487 4.45528 4.50053 4.53227 4.70161 4.86362 5.08337 5.14661 5.19477 5.31362 5.34886 5.35444 5.40720 5.44939 5.54658 5.59579 5.65094 5.72071 5.74898 5.84308 5.88207 6.21125 6.43239 6.56252 6.65124 6.83169 6.84336 7.04895 7.11391 7.65511 7.78775 7.98863 8.19008 8.39856 8.78825 9.03336 9.60721 11.11150 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.038770 B = 0.002393 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.035101 B =11700.201156 C =11849.336413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.371 6.371 3 C 0.136 3.864 4 C -0.142 4.142 5 C 0.119 3.881 6 N -0.746 5.746 7 C 0.700 3.300 8 O -0.595 6.595 9 N -0.741 5.741 10 C 0.135 3.865 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.181 4.181 22 C -0.174 4.174 23 C -0.173 4.173 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.397 0.603 33 H 0.394 0.606 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -2.562 28.221 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.290 6.290 3 C 0.096 3.904 4 C -0.199 4.199 5 C -0.007 4.007 6 N -0.403 5.403 7 C 0.399 3.601 8 O -0.473 6.473 9 N -0.396 5.396 10 C 0.012 3.988 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.200 4.200 22 C -0.210 4.210 23 C -0.210 4.210 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.232 0.768 33 H 0.227 0.773 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.119 -1.633 28.022 28.242 hybrid contribution 0.393 -1.101 -0.786 1.409 sum 3.512 -2.733 27.236 27.597 Atomic orbital electron populations 1.22835 0.81086 1.02769 1.00621 1.87975 1.19920 1.26298 1.94800 1.21189 0.94509 0.83218 0.91511 1.21895 0.91988 1.02892 1.03171 1.21673 1.00923 0.96164 0.81892 1.45011 1.62370 1.28499 1.04468 1.16014 0.80001 0.83626 0.80430 1.90916 1.45825 1.24060 1.86543 1.45376 1.60954 1.27788 1.05440 1.21506 0.99649 0.97494 0.80137 1.21889 1.00251 0.98247 0.95430 1.19023 0.96917 0.96312 0.89100 1.21170 1.35569 1.08210 0.91135 0.92707 1.25035 0.95226 0.95260 0.98972 1.69958 1.39659 1.23828 1.19844 0.86639 0.79070 0.80759 0.81395 1.20258 1.21286 1.20252 1.22776 0.99805 0.99500 0.97918 1.23124 0.97946 1.02624 0.97350 1.23002 1.03871 0.90766 1.03337 0.93288 0.89546 0.93737 0.90986 0.91482 0.90667 0.91277 0.90681 0.76781 0.77312 0.92011 0.91997 0.92772 0.92777 0.96258 0.96259 0.92880 0.87109 0.88772 0.87824 0.88286 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.13 101.05 1.02 1.21 16 2 O -0.37 -3.42 10.09 -35.23 -0.36 -3.78 16 3 C 0.14 1.11 0.64 -90.62 -0.06 1.05 16 4 C -0.14 -1.00 7.26 37.16 0.27 -0.73 16 5 C 0.12 1.23 3.88 -4.04 -0.02 1.21 16 6 N -0.75 -8.57 5.15 -65.22 -0.34 -8.90 16 7 C 0.70 11.00 8.57 -86.92 -0.74 10.26 16 8 O -0.60 -11.92 16.34 5.29 0.09 -11.83 16 9 N -0.74 -11.10 5.56 -65.21 -0.36 -11.46 16 10 C 0.14 2.46 5.67 -4.03 -0.02 2.44 16 11 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 12 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 13 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.18 -1.29 5.17 -90.62 -0.47 -1.76 16 22 C -0.17 -1.03 9.56 -26.73 -0.26 -1.29 16 23 C -0.17 -1.10 9.38 -26.73 -0.25 -1.35 16 24 H 0.05 0.45 6.65 -51.93 -0.35 0.10 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.30 6.22 -51.93 -0.32 -0.02 16 27 H 0.07 0.46 7.01 -51.92 -0.36 0.10 16 28 H 0.07 0.48 6.86 -51.93 -0.36 0.12 16 29 H 0.07 0.48 7.09 -51.93 -0.37 0.11 16 30 H 0.07 0.79 6.60 -51.93 -0.34 0.45 16 31 H 0.07 0.82 7.24 -51.93 -0.38 0.45 16 32 H 0.40 3.76 7.21 -40.82 -0.29 3.47 16 33 H 0.39 4.75 8.49 -40.82 -0.35 4.41 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.11 0.77 6.36 -51.93 -0.33 0.44 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.57 5.84 -51.93 -0.30 0.26 16 44 H 0.10 0.65 7.07 -51.93 -0.37 0.28 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -33.30 358.33 -8.53 -41.83 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.46 Total: 2.91 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.21 Total: -4.48 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.04 Total: -46.62 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.27 Total: -15.61 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.30 -8.53 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361494708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.729 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds