Wall clock time and date at job start Tue Mar 31 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99459 * 2 1 4 4 C 1.53004 * 109.46715 * 185.41383 * 3 2 1 5 5 C 1.52994 * 109.47731 * 305.41201 * 3 2 1 6 6 N 1.46504 * 109.46948 * 300.00472 * 5 3 2 7 7 C 1.34776 * 119.99783 * 179.97438 * 6 5 3 8 8 O 1.21589 * 120.00011 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99748 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99683 * 180.02562 * 9 7 6 11 11 C 1.53011 * 109.46894 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46863 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46839 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00138 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00008 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99784 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47076 * 59.99765 * 17 15 13 19 19 H 1.48504 * 109.47100 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47248 * 299.99760 * 17 15 13 21 21 C 1.53004 * 109.47159 * 65.41564 * 3 2 1 22 22 C 1.52998 * 117.51704 * 112.11957 * 21 3 2 23 23 C 1.52996 * 60.00061 * 107.47970 * 22 21 3 24 24 H 1.09001 * 109.47307 * 65.21805 * 1 2 3 25 25 H 1.09000 * 109.47171 * 185.21606 * 1 2 3 26 26 H 1.09001 * 109.47567 * 305.21598 * 1 2 3 27 27 H 1.09008 * 109.47044 * 299.99914 * 4 3 2 28 28 H 1.08993 * 109.47458 * 60.00095 * 4 3 2 29 29 H 1.08999 * 109.47064 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47218 * 59.99964 * 5 3 2 31 31 H 1.08999 * 109.47380 * 180.02562 * 5 3 2 32 32 H 0.96990 * 120.00310 * 359.97438 * 6 5 3 33 33 H 0.96995 * 120.00507 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.47126 * 299.99348 * 10 9 7 35 35 H 1.08999 * 109.47676 * 59.99933 * 10 9 7 36 36 H 1.08996 * 109.46743 * 299.99822 * 11 10 9 37 37 H 1.08999 * 109.46832 * 59.99638 * 11 10 9 38 38 H 1.09006 * 109.47569 * 300.00188 * 12 11 10 39 39 H 1.09000 * 109.46974 * 60.00186 * 12 11 10 40 40 H 0.96996 * 119.99620 * 180.02562 * 16 15 13 41 41 H 1.09000 * 115.54660 * 326.42050 * 21 3 2 42 42 H 1.09002 * 117.49845 * 214.96921 * 22 21 3 43 43 H 1.09001 * 117.49931 * 359.97438 * 22 21 3 44 44 H 1.09004 * 117.50314 * 252.51075 * 23 22 21 45 45 H 1.09004 * 117.50011 * 107.48605 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5295 1.1874 -0.1361 5 6 1.4540 2.1115 -1.1756 6 7 1.7804 1.4316 -2.4316 7 6 1.3881 1.9623 -3.6067 8 8 0.7630 3.0050 -3.6244 9 7 1.6880 1.3365 -4.7622 10 6 1.2620 1.9137 -6.0396 11 6 1.7270 1.0135 -7.1862 12 6 1.2817 1.6159 -8.5202 13 6 1.7401 0.7297 -9.6495 14 1 2.2941 -0.1727 -9.4370 15 6 1.4532 1.0714 -10.9542 16 7 0.7790 2.1706 -11.2129 17 14 2.0209 -0.0275 -12.3540 18 1 1.4231 -1.3777 -12.1970 19 1 1.5888 0.5572 -13.6488 20 1 3.5018 -0.1359 -12.3289 21 6 1.6692 2.0155 1.3118 22 6 2.8167 2.2900 2.2859 23 6 2.1894 3.4422 1.4987 24 1 -0.3634 0.4308 -0.9330 25 1 -0.3633 -1.0234 0.0934 26 1 -0.3634 0.5926 0.8396 27 1 3.9258 0.6132 0.7015 28 1 3.7724 0.6816 -1.0705 29 1 3.9728 2.1831 -0.1357 30 1 0.3716 2.1956 -1.0787 31 1 1.8976 3.1071 -1.1758 32 1 2.2787 0.5996 -2.4175 33 1 2.1863 0.5045 -4.7481 34 1 0.1751 1.9936 -6.0578 35 1 1.7012 2.9046 -6.1551 36 1 2.8139 0.9340 -7.1678 37 1 1.2882 0.0224 -7.0709 38 1 0.1946 1.6952 -8.5384 39 1 1.7202 2.6071 -8.6357 40 1 0.5769 2.4108 -12.1307 41 1 0.6947 1.7753 1.7368 42 1 2.5970 2.2304 3.3519 43 1 3.8147 1.9643 1.9926 44 1 2.7747 3.8749 0.6873 45 1 1.5570 4.1407 2.0468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361494708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:27 Heat of formation + Delta-G solvation = -86.683819 kcal Electronic energy + Delta-G solvation = -22438.192305 eV Core-core repulsion = 19069.454724 eV Total energy + Delta-G solvation = -3368.737581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45081 -40.34574 -37.33474 -37.03482 -35.56030 -35.17163 -33.04921 -31.71511 -28.98035 -27.86724 -27.05667 -25.17395 -24.17579 -23.09215 -22.30381 -21.82878 -20.31641 -19.21096 -18.55328 -18.17265 -17.24392 -16.90099 -16.54071 -16.52820 -16.28050 -16.02700 -15.42234 -15.27893 -15.06378 -14.49150 -14.24274 -14.04036 -13.73484 -13.63421 -13.34358 -13.21402 -12.81116 -12.70922 -12.60807 -12.54386 -12.39328 -12.07577 -11.95172 -11.66142 -11.65893 -11.33439 -11.30068 -11.17236 -10.91060 -10.55287 -10.53899 -10.41677 -9.78674 -8.18488 -6.30057 1.42175 1.45452 1.53162 1.64927 2.11989 2.42699 2.59531 3.00283 3.15049 3.29135 3.59069 3.70175 3.84446 4.01179 4.16424 4.17970 4.23419 4.25631 4.46246 4.50323 4.53995 4.56916 4.69812 4.75438 4.83355 4.88459 4.92743 4.96525 5.00006 5.03991 5.11134 5.17551 5.26092 5.33866 5.41173 5.47295 5.54727 5.71988 5.85099 5.97144 6.17759 6.23544 6.87009 7.08009 7.39329 7.55464 8.93473 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.038770 B = 0.002393 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.035101 B =11700.201156 C =11849.336413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.381 6.381 3 C 0.142 3.858 4 C -0.143 4.143 5 C 0.118 3.882 6 N -0.725 5.725 7 C 0.698 3.302 8 O -0.640 6.640 9 N -0.730 5.730 10 C 0.150 3.850 11 C -0.100 4.100 12 C 0.024 3.976 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.192 4.192 22 C -0.164 4.164 23 C -0.176 4.176 24 H 0.033 0.967 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.411 0.589 33 H 0.411 0.589 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.067 0.933 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 -4.414 29.378 30.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.300 6.300 3 C 0.102 3.898 4 C -0.200 4.200 5 C -0.007 4.007 6 N -0.383 5.383 7 C 0.397 3.603 8 O -0.522 6.522 9 N -0.385 5.385 10 C 0.025 3.975 11 C -0.138 4.138 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.211 4.211 22 C -0.200 4.200 23 C -0.213 4.213 24 H 0.051 0.949 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.114 0.886 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.605 -3.542 29.227 29.799 hybrid contribution -0.085 -0.493 -1.083 1.193 sum 4.519 -4.035 28.144 28.789 Atomic orbital electron populations 1.22895 0.80644 1.03664 1.00257 1.87963 1.20464 1.26763 1.94794 1.21166 0.95036 0.82650 0.90899 1.21939 0.91004 1.03524 1.03571 1.21786 1.00380 0.96442 0.82061 1.44843 1.61261 1.28597 1.03569 1.16152 0.79675 0.83124 0.81317 1.90890 1.47902 1.26202 1.87247 1.45025 1.60985 1.28311 1.04220 1.21080 0.98516 0.96648 0.81212 1.21587 1.01025 0.98443 0.92731 1.18939 0.95016 0.95278 0.92171 1.21652 1.35461 1.08786 0.92032 0.91504 1.26041 0.95243 0.96743 1.02165 1.70109 1.41053 1.25852 1.20531 0.85459 0.79060 0.78828 0.77436 1.19032 1.21194 1.18981 1.22755 1.00495 1.00061 0.97791 1.23212 0.97717 1.01489 0.97602 1.23049 1.04012 0.90696 1.03531 0.94867 0.88339 0.92644 0.90011 0.91551 0.89980 0.92475 0.91209 0.75225 0.75237 0.93597 0.93476 0.91305 0.91406 0.98978 0.98932 0.92816 0.87070 0.87829 0.87124 0.88570 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.13 113.37 1.15 1.47 16 2 O -0.38 -6.42 10.09 -148.98 -1.50 -7.92 16 3 C 0.14 2.12 0.64 -10.79 -0.01 2.11 16 4 C -0.14 -1.72 7.26 71.98 0.52 -1.20 16 5 C 0.12 2.38 3.88 86.38 0.33 2.72 16 6 N -0.73 -15.95 5.15 -478.53 -2.47 -18.41 16 7 C 0.70 21.65 8.57 179.05 1.53 23.19 16 8 O -0.64 -26.06 16.34 -4.00 -0.07 -26.13 16 9 N -0.73 -21.12 5.56 -478.50 -2.66 -23.78 16 10 C 0.15 5.49 5.67 86.38 0.49 5.98 16 11 C -0.10 -3.90 5.27 30.60 0.16 -3.74 16 12 C 0.02 1.25 4.97 29.85 0.15 1.39 16 13 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 15 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 16 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 17 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 21 C -0.19 -2.45 5.17 -10.79 -0.06 -2.50 16 22 C -0.16 -1.60 9.56 30.59 0.29 -1.31 16 23 C -0.18 -2.01 9.38 30.59 0.29 -1.72 16 24 H 0.03 0.59 6.65 -2.39 -0.02 0.58 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 0.69 6.22 -2.39 -0.01 0.68 16 27 H 0.08 0.85 7.01 -2.38 -0.02 0.83 16 28 H 0.07 0.80 6.86 -2.39 -0.02 0.79 16 29 H 0.08 0.88 7.09 -2.39 -0.02 0.86 16 30 H 0.06 1.31 6.60 -2.39 -0.02 1.30 16 31 H 0.07 1.51 7.24 -2.39 -0.02 1.49 16 32 H 0.41 7.02 7.21 -92.72 -0.67 6.35 16 33 H 0.41 9.03 8.49 -92.71 -0.79 8.24 16 34 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.11 1.40 6.36 -2.39 -0.02 1.38 16 42 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.11 0.93 5.84 -2.39 -0.01 0.92 16 44 H 0.10 1.15 7.07 -2.38 -0.02 1.14 16 45 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -72.25 358.33 0.71 -71.55 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.46 Total: 19.50 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.55 Total: -3.54 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.84 Total: -99.42 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.57 Total: -34.05 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -72.25 0.71 -71.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361494708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.138 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds