Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47409 * 2 1 4 4 H 1.08997 * 109.46946 * 54.99463 * 3 2 1 5 5 N 1.46500 * 109.46872 * 294.99754 * 3 2 1 6 6 C 1.34777 * 119.99975 * 84.99953 * 5 3 2 7 7 O 1.21282 * 120.00150 * 0.02562 * 6 5 3 8 8 C 1.50699 * 119.99853 * 179.97438 * 6 5 3 9 9 H 1.09004 * 109.47103 * 40.00125 * 8 6 5 10 10 N 1.46906 * 109.47140 * 160.00024 * 8 6 5 11 11 C 1.53002 * 109.47389 * 280.00115 * 8 6 5 12 12 C 1.53000 * 109.47379 * 175.00266 * 11 8 6 13 13 C 1.50695 * 109.47339 * 180.02562 * 12 11 8 14 14 H 1.08006 * 119.99588 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00492 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99769 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00469 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46990 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47327 * 120.00073 * 17 15 13 20 20 H 1.48496 * 109.47273 * 240.00077 * 17 15 13 21 21 C 1.52999 * 109.47336 * 174.99936 * 3 2 1 22 22 H 1.09002 * 110.32785 * 300.70275 * 21 3 2 23 23 C 1.54473 * 110.37372 * 178.44804 * 21 3 2 24 24 C 1.54513 * 104.06292 * 217.18931 * 23 21 3 25 25 C 1.54479 * 104.05968 * 359.97438 * 24 23 21 26 26 O 1.44420 * 110.37080 * 62.94472 * 21 3 2 27 27 H 1.09001 * 109.46462 * 60.00135 * 1 2 3 28 28 H 1.08995 * 109.47461 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46943 * 300.00407 * 1 2 3 30 30 H 1.08999 * 109.46943 * 239.99593 * 2 1 3 31 31 H 1.09001 * 109.46462 * 119.99865 * 2 1 3 32 32 H 0.97003 * 120.00353 * 265.00291 * 5 3 2 33 33 H 1.00900 * 110.99554 * 296.04702 * 10 8 6 34 34 H 1.00900 * 110.99744 * 60.00180 * 10 8 6 35 35 H 1.08998 * 109.46957 * 294.99988 * 11 8 6 36 36 H 1.09000 * 109.47241 * 54.99907 * 11 8 6 37 37 H 1.09006 * 109.46717 * 300.00085 * 12 11 8 38 38 H 1.09000 * 109.47227 * 59.99633 * 12 11 8 39 39 H 0.97006 * 120.00368 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.51128 * 335.83404 * 23 21 3 41 41 H 1.09003 * 110.51022 * 98.40362 * 23 21 3 42 42 H 1.08993 * 110.50784 * 118.64792 * 24 23 21 43 43 H 1.08999 * 110.50909 * 241.21895 * 24 23 21 44 44 H 1.09001 * 110.36972 * 142.81033 * 25 24 23 45 45 H 1.09000 * 110.37547 * 265.03612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 7 1.6526 2.0974 -1.2519 6 6 0.4353 2.6643 -1.3671 7 8 -0.3391 2.6327 -0.4342 8 6 0.0370 3.3385 -2.6546 9 1 0.3968 2.7506 -3.4991 10 7 -1.4269 3.4439 -2.7197 11 6 0.6519 4.7385 -2.7088 12 6 0.3519 5.3751 -4.0674 13 6 0.9581 6.7537 -4.1210 14 1 1.5026 7.1376 -3.2709 15 6 0.8177 7.5249 -5.2551 16 7 0.1543 7.0577 -6.2901 17 14 1.5686 9.2341 -5.3214 18 1 2.2577 9.5221 -4.0379 19 1 2.5489 9.3014 -6.4348 20 1 0.4968 10.2374 -5.5442 21 6 3.5649 1.4443 0.1257 22 1 3.8695 0.9486 1.0475 23 6 4.1059 2.8907 0.0888 24 6 5.4259 2.7777 -0.7064 25 6 5.5265 1.2762 -1.0552 26 8 4.1643 0.7943 -1.0162 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.2721 2.1230 -1.9979 33 1 -1.8541 2.5303 -2.7505 34 1 -1.7851 3.9848 -1.9469 35 1 0.2249 5.3538 -1.9170 36 1 1.7309 4.6669 -2.5715 37 1 0.7789 4.7597 -4.8592 38 1 -0.7271 5.4466 -4.2047 39 1 0.0551 7.6004 -7.0880 40 1 3.4049 3.5476 -0.4261 41 1 4.2959 3.2533 1.0990 42 1 5.3773 3.3788 -1.6143 43 1 6.2705 3.0859 -0.0901 44 1 5.9468 1.1457 -2.0524 45 1 6.1353 0.7550 -0.3164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575997957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = -107.161543 kcal Electronic energy + Delta-G solvation = -23655.658032 eV Core-core repulsion = 20286.032471 eV Total energy + Delta-G solvation = -3369.625561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46134 -39.19209 -35.96190 -34.93939 -32.79406 -32.42016 -32.06304 -30.09353 -29.92862 -26.61076 -25.62347 -23.62527 -22.69137 -21.20226 -21.03457 -20.34349 -19.77632 -17.34667 -16.86245 -16.27072 -16.18673 -15.79620 -15.45782 -15.02345 -14.84491 -14.43762 -14.15875 -13.91890 -13.41112 -13.28881 -13.08857 -12.73940 -12.30553 -12.22622 -11.96202 -11.95254 -11.63022 -11.48503 -11.36106 -10.99553 -10.91034 -10.85090 -10.74500 -10.62180 -10.49787 -10.06255 -10.01468 -9.77321 -9.34924 -8.97854 -8.89380 -8.32428 -8.16432 -5.93043 -3.95089 2.85588 3.32156 3.33758 3.41442 3.44950 3.62918 4.25153 4.46545 4.50562 4.69102 4.77660 4.93760 4.95494 4.99289 5.09695 5.18504 5.20676 5.37558 5.42611 5.46114 5.51124 5.58907 5.64174 5.66037 5.79871 5.84683 5.88340 5.92707 5.94560 6.15320 6.39329 6.46194 6.49856 6.64337 6.69406 7.11371 7.44373 7.71078 7.77950 7.84396 7.98044 8.14751 8.41962 8.49677 9.13240 9.68036 11.17912 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.004477 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.547668 B = 6253.017585 C = 7589.316578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.152 3.848 4 H 0.096 0.904 5 N -0.718 5.718 6 C 0.484 3.516 7 O -0.551 6.551 8 C 0.078 3.922 9 H 0.096 0.904 10 N -0.807 5.807 11 C -0.093 4.093 12 C 0.031 3.969 13 C -0.521 4.521 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.067 3.933 22 H 0.079 0.921 23 C -0.155 4.155 24 C -0.156 4.156 25 C 0.045 3.955 26 O -0.367 6.367 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.406 0.594 33 H 0.333 0.667 34 H 0.347 0.653 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.013 0.987 38 H 0.035 0.965 39 H 0.259 0.741 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.785 -14.437 13.177 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.046 3.954 4 H 0.114 0.886 5 N -0.371 5.371 6 C 0.270 3.730 7 O -0.429 6.429 8 C -0.038 4.038 9 H 0.114 0.886 10 N -0.335 5.335 11 C -0.132 4.132 12 C -0.006 4.006 13 C -0.559 4.559 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.716 3.284 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C 0.009 3.991 22 H 0.096 0.904 23 C -0.193 4.193 24 C -0.194 4.194 25 C -0.032 4.032 26 O -0.286 6.286 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.242 0.758 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.172 -14.169 12.824 20.785 hybrid contribution 0.988 0.578 0.651 1.317 sum 9.160 -13.592 13.475 21.218 Atomic orbital electron populations 1.21791 0.94906 1.00309 1.03032 1.21876 0.96829 0.95750 1.02362 1.21040 0.91359 0.94027 0.88970 0.88616 1.46124 1.17286 1.57382 1.16281 1.22644 0.81172 0.77238 0.91991 1.90644 1.51471 1.59705 1.41060 1.21821 0.90443 0.99223 0.92328 0.88630 1.58998 1.02698 1.20361 1.51401 1.21630 0.98006 0.90786 1.02754 1.19019 0.98387 0.94167 0.89070 1.21311 1.34038 1.00709 0.99868 0.93004 1.24986 0.95463 0.98012 0.95849 1.69987 1.41526 1.37100 1.04549 0.86611 0.79014 0.84949 0.77843 1.19896 1.21125 1.21051 1.23341 0.93003 0.92495 0.90265 0.90357 1.23017 0.97541 0.97209 1.01499 1.22939 0.97834 0.97242 1.01367 1.23429 0.84430 0.93093 1.02254 1.89166 1.24190 1.67436 1.47763 0.92403 0.93795 0.92392 0.91199 0.91677 0.75848 0.85537 0.83898 0.92946 0.93006 0.96908 0.94680 0.93169 0.89603 0.90514 0.90094 0.90631 0.88909 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.52 37.16 0.32 -1.43 16 2 C -0.13 -1.40 5.44 -26.73 -0.15 -1.55 16 3 C 0.15 1.70 2.13 -67.93 -0.14 1.56 16 4 H 0.10 1.19 7.58 -51.93 -0.39 0.79 16 5 N -0.72 -9.10 4.02 -53.81 -0.22 -9.32 16 6 C 0.48 7.38 5.63 -10.99 -0.06 7.32 16 7 O -0.55 -9.47 13.39 5.56 0.07 -9.39 16 8 C 0.08 1.30 3.15 -68.86 -0.22 1.09 16 9 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 10 N -0.81 -13.64 8.44 -5.65 -0.05 -13.69 16 11 C -0.09 -1.88 4.78 -26.73 -0.13 -2.00 16 12 C 0.03 0.78 4.86 -27.89 -0.14 0.65 16 13 C -0.52 -14.70 9.11 -34.45 -0.31 -15.02 16 14 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.07 0.64 3.03 -25.96 -0.08 0.56 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 C -0.15 -1.46 6.53 -25.16 -0.16 -1.63 16 24 C -0.16 -1.31 7.09 -25.16 -0.18 -1.49 16 25 C 0.04 0.37 7.63 37.93 0.29 0.66 16 26 O -0.37 -3.85 10.38 -35.23 -0.37 -4.22 16 27 H 0.06 0.81 5.65 -51.93 -0.29 0.52 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 30 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.41 4.98 8.13 -40.82 -0.33 4.65 16 33 H 0.33 4.93 9.06 -39.29 -0.36 4.57 16 34 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.09 0.98 7.13 -51.93 -0.37 0.61 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -31.48 357.17 -8.44 -39.91 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.92 Total: 10.57 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.06 Total: -9.71 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.47 Total: -49.23 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.29 Total: -13.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.48 -8.44 -39.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575997957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.248 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds