Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47409 * 2 1 4 4 H 1.08997 * 109.46946 * 54.99463 * 3 2 1 5 5 N 1.46500 * 109.46872 * 294.99754 * 3 2 1 6 6 C 1.34777 * 119.99975 * 84.99953 * 5 3 2 7 7 O 1.21282 * 120.00150 * 0.02562 * 6 5 3 8 8 C 1.50699 * 119.99853 * 179.97438 * 6 5 3 9 9 H 1.09004 * 109.47103 * 40.00125 * 8 6 5 10 10 N 1.46906 * 109.47140 * 160.00024 * 8 6 5 11 11 C 1.53002 * 109.47389 * 280.00115 * 8 6 5 12 12 C 1.53000 * 109.47379 * 175.00266 * 11 8 6 13 13 C 1.50695 * 109.47339 * 180.02562 * 12 11 8 14 14 H 1.08006 * 119.99588 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00492 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99769 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00469 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46990 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47327 * 120.00073 * 17 15 13 20 20 H 1.48496 * 109.47273 * 240.00077 * 17 15 13 21 21 C 1.52999 * 109.47336 * 174.99936 * 3 2 1 22 22 H 1.09002 * 110.32785 * 300.70275 * 21 3 2 23 23 C 1.54473 * 110.37372 * 178.44804 * 21 3 2 24 24 C 1.54513 * 104.06292 * 217.18931 * 23 21 3 25 25 C 1.54479 * 104.05968 * 359.97438 * 24 23 21 26 26 O 1.44420 * 110.37080 * 62.94472 * 21 3 2 27 27 H 1.09001 * 109.46462 * 60.00135 * 1 2 3 28 28 H 1.08995 * 109.47461 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46943 * 300.00407 * 1 2 3 30 30 H 1.08999 * 109.46943 * 239.99593 * 2 1 3 31 31 H 1.09001 * 109.46462 * 119.99865 * 2 1 3 32 32 H 0.97003 * 120.00353 * 265.00291 * 5 3 2 33 33 H 1.00900 * 110.99554 * 296.04702 * 10 8 6 34 34 H 1.00900 * 110.99744 * 60.00180 * 10 8 6 35 35 H 1.08998 * 109.46957 * 294.99988 * 11 8 6 36 36 H 1.09000 * 109.47241 * 54.99907 * 11 8 6 37 37 H 1.09006 * 109.46717 * 300.00085 * 12 11 8 38 38 H 1.09000 * 109.47227 * 59.99633 * 12 11 8 39 39 H 0.97006 * 120.00368 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.51128 * 335.83404 * 23 21 3 41 41 H 1.09003 * 110.51022 * 98.40362 * 23 21 3 42 42 H 1.08993 * 110.50784 * 118.64792 * 24 23 21 43 43 H 1.08999 * 110.50909 * 241.21895 * 24 23 21 44 44 H 1.09001 * 110.36972 * 142.81033 * 25 24 23 45 45 H 1.09000 * 110.37547 * 265.03612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 7 1.6526 2.0974 -1.2519 6 6 0.4353 2.6643 -1.3671 7 8 -0.3391 2.6327 -0.4342 8 6 0.0370 3.3385 -2.6546 9 1 0.3968 2.7506 -3.4991 10 7 -1.4269 3.4439 -2.7197 11 6 0.6519 4.7385 -2.7088 12 6 0.3519 5.3751 -4.0674 13 6 0.9581 6.7537 -4.1210 14 1 1.5026 7.1376 -3.2709 15 6 0.8177 7.5249 -5.2551 16 7 0.1543 7.0577 -6.2901 17 14 1.5686 9.2341 -5.3214 18 1 2.2577 9.5221 -4.0379 19 1 2.5489 9.3014 -6.4348 20 1 0.4968 10.2374 -5.5442 21 6 3.5649 1.4443 0.1257 22 1 3.8695 0.9486 1.0475 23 6 4.1059 2.8907 0.0888 24 6 5.4259 2.7777 -0.7064 25 6 5.5265 1.2762 -1.0552 26 8 4.1643 0.7943 -1.0162 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.2721 2.1230 -1.9979 33 1 -1.8541 2.5303 -2.7505 34 1 -1.7851 3.9848 -1.9469 35 1 0.2249 5.3538 -1.9170 36 1 1.7309 4.6669 -2.5715 37 1 0.7789 4.7597 -4.8592 38 1 -0.7271 5.4466 -4.2047 39 1 0.0551 7.6004 -7.0880 40 1 3.4049 3.5476 -0.4261 41 1 4.2959 3.2533 1.0990 42 1 5.3773 3.3788 -1.6143 43 1 6.2705 3.0859 -0.0901 44 1 5.9468 1.1457 -2.0524 45 1 6.1353 0.7550 -0.3164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575997957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = -129.487443 kcal Electronic energy + Delta-G solvation = -23656.626156 eV Core-core repulsion = 20286.032471 eV Total energy + Delta-G solvation = -3370.593685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49432 -40.15147 -37.16923 -36.34913 -34.79696 -33.34493 -32.91991 -31.91147 -30.77639 -28.18657 -26.72945 -25.28285 -23.43721 -22.58901 -21.93003 -21.47690 -21.13302 -18.74327 -18.12888 -17.79048 -17.11098 -16.96725 -16.55448 -16.41253 -15.98674 -15.92496 -15.37559 -14.94245 -14.63972 -14.34012 -14.17526 -14.12774 -13.79725 -13.60731 -13.40487 -13.02730 -12.82260 -12.65520 -12.50358 -12.43723 -12.22534 -12.14343 -11.85570 -11.72925 -11.69744 -11.57890 -11.47558 -11.20927 -10.93867 -10.75038 -10.49121 -9.98188 -9.57208 -8.13439 -6.23804 1.41364 1.42342 1.54513 1.60162 2.22140 2.44920 2.90204 3.19711 3.45790 3.60787 3.74404 3.89360 4.02199 4.08070 4.10722 4.15761 4.21690 4.34202 4.34322 4.43371 4.60650 4.65535 4.76926 4.78586 4.86569 4.94138 4.95389 5.01029 5.03051 5.12601 5.18802 5.20393 5.26777 5.42315 5.54306 5.57691 5.84794 5.88440 5.99156 6.12748 6.30838 6.50629 6.57841 6.95062 7.22667 7.44447 8.98102 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.004477 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.547668 B = 6253.017585 C = 7589.316578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.149 3.851 4 H 0.086 0.914 5 N -0.706 5.706 6 C 0.492 3.508 7 O -0.569 6.569 8 C 0.084 3.916 9 H 0.101 0.899 10 N -0.818 5.818 11 C -0.078 4.078 12 C 0.039 3.961 13 C -0.541 4.541 14 H 0.056 0.944 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.281 1.281 21 C 0.073 3.927 22 H 0.101 0.899 23 C -0.157 4.157 24 C -0.154 4.154 25 C 0.042 3.958 26 O -0.385 6.385 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.409 0.591 33 H 0.345 0.655 34 H 0.345 0.655 35 H 0.043 0.957 36 H 0.063 0.937 37 H -0.009 1.009 38 H 0.005 0.995 39 H 0.262 0.738 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -14.801 14.450 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.045 3.955 4 H 0.104 0.896 5 N -0.358 5.358 6 C 0.277 3.723 7 O -0.449 6.449 8 C -0.032 4.032 9 H 0.119 0.881 10 N -0.347 5.347 11 C -0.117 4.117 12 C 0.002 3.998 13 C -0.579 4.579 14 H 0.074 0.926 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.785 3.215 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.207 1.207 21 C 0.015 3.985 22 H 0.119 0.881 23 C -0.195 4.195 24 C -0.192 4.192 25 C -0.034 4.034 26 O -0.304 6.304 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.245 0.755 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.010 0.990 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.040 -14.557 14.107 22.621 hybrid contribution 0.412 0.650 0.244 0.808 sum 10.452 -13.906 14.351 22.552 Atomic orbital electron populations 1.21733 0.96005 1.00595 1.01332 1.21836 0.95680 0.95428 1.03235 1.21167 0.92880 0.93970 0.87523 0.89584 1.46029 1.16211 1.56425 1.17094 1.22113 0.81836 0.77495 0.90864 1.90642 1.52214 1.60705 1.41312 1.21596 0.90367 0.97487 0.93723 0.88118 1.58966 1.02921 1.21329 1.51498 1.21345 0.98958 0.92279 0.99074 1.18828 0.96014 0.93572 0.91395 1.21745 1.34123 1.01971 1.00104 0.92619 1.25899 0.95850 1.02412 0.95422 1.70119 1.42825 1.38901 1.05248 0.85485 0.78222 0.79475 0.78360 1.18737 1.20304 1.20687 1.23337 0.91438 0.92754 0.90958 0.88132 1.23016 0.97546 0.96756 1.02144 1.22932 0.97888 0.97361 1.00975 1.23575 0.83638 0.92924 1.03251 1.89146 1.25408 1.67699 1.48177 0.94561 0.92521 0.93549 0.91518 0.89484 0.75462 0.84185 0.84100 0.93842 0.91798 0.99039 0.97641 0.92954 0.91968 0.89181 0.91327 0.88893 0.88427 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.52 71.98 0.61 -2.65 16 2 C -0.12 -2.44 5.44 30.60 0.17 -2.28 16 3 C 0.15 3.14 2.13 44.99 0.10 3.24 16 4 H 0.09 2.03 7.58 -2.39 -0.02 2.01 16 5 N -0.71 -17.41 4.02 -442.54 -1.78 -19.19 16 6 C 0.49 14.90 5.63 87.66 0.49 15.40 16 7 O -0.57 -19.50 13.39 -3.04 -0.04 -19.54 16 8 C 0.08 2.84 3.15 44.17 0.14 2.98 16 9 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 10 N -0.82 -28.17 8.44 -171.78 -1.45 -29.62 16 11 C -0.08 -3.18 4.78 30.60 0.15 -3.03 16 12 C 0.04 2.06 4.86 29.85 0.15 2.20 16 13 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 14 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -57.10 13.29 21.44 0.28 -56.82 16 17 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 C 0.07 1.23 3.03 31.09 0.09 1.33 16 22 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 23 C -0.16 -2.68 6.53 31.61 0.21 -2.48 16 24 C -0.15 -2.27 7.09 31.61 0.22 -2.05 16 25 C 0.04 0.60 7.63 72.48 0.55 1.15 16 26 O -0.38 -7.25 10.38 -148.98 -1.55 -8.80 16 27 H 0.04 1.00 5.65 -2.39 -0.01 0.98 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.18 7.85 -2.39 -0.02 1.16 16 30 H 0.07 1.39 7.95 -2.39 -0.02 1.38 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.41 9.72 8.13 -92.71 -0.75 8.97 16 33 H 0.35 10.31 9.06 -89.69 -0.81 9.50 16 34 H 0.35 12.06 8.58 -89.69 -0.77 11.29 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 37 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 38 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 39 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 40 H 0.06 1.36 7.13 -2.39 -0.02 1.35 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -67.72 357.17 -0.28 -68.00 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -1.35 Total: 35.69 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 3.57 Total: -16.26 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -2.94 Total: -105.62 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -1.59 Total: -28.34 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.72 -0.28 -68.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575997957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.483 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds