Wall clock time and date at job start Tue Mar 31 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47031 * 2 1 4 4 C 1.52998 * 109.47155 * 240.00139 * 2 1 3 5 5 C 1.50702 * 109.47114 * 59.99594 * 4 2 1 6 6 H 1.08001 * 119.99827 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99799 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00036 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99672 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47303 * 90.00060 * 9 7 5 11 11 H 1.48504 * 109.46969 * 209.99910 * 9 7 5 12 12 H 1.48498 * 109.47176 * 329.99300 * 9 7 5 13 13 C 1.53005 * 109.47291 * 119.99867 * 2 1 3 14 14 N 1.46498 * 109.47130 * 300.00455 * 13 2 1 15 15 C 1.34773 * 119.99945 * 180.02562 * 14 13 2 16 16 O 1.21586 * 119.99898 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00158 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00015 * 179.97438 * 17 15 14 19 19 H 1.09004 * 112.90889 * 336.25053 * 18 17 15 20 20 C 1.53784 * 113.61524 * 107.50411 * 18 17 15 21 21 C 1.53778 * 87.08081 * 139.98080 * 20 18 17 22 22 H 1.08999 * 113.69218 * 89.12660 * 21 20 18 23 23 C 1.53001 * 113.61526 * 220.01868 * 21 20 18 24 24 O 1.42901 * 109.47278 * 272.50133 * 23 21 20 25 25 C 1.53778 * 87.08449 * 334.56700 * 21 20 18 26 26 H 1.09000 * 109.47052 * 299.99436 * 1 2 3 27 27 H 1.09000 * 109.47392 * 60.00167 * 1 2 3 28 28 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47192 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46896 * 300.00136 * 3 2 1 31 31 H 1.09000 * 109.47097 * 59.99963 * 3 2 1 32 32 H 1.09005 * 109.47209 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46881 * 299.99811 * 4 2 1 34 34 H 0.97008 * 119.99775 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47021 * 179.97438 * 13 2 1 36 36 H 1.09006 * 109.46634 * 60.00420 * 13 2 1 37 37 H 0.96998 * 120.00087 * 359.97438 * 14 13 2 38 38 H 0.96998 * 119.99607 * 0.02562 * 17 15 14 39 39 H 1.08993 * 113.61313 * 254.52676 * 20 18 17 40 40 H 1.09000 * 113.61578 * 25.43408 * 20 18 17 41 41 H 1.09008 * 109.46870 * 32.49758 * 23 21 20 42 42 H 1.09000 * 109.47055 * 152.49586 * 23 21 20 43 43 H 0.96697 * 114.00075 * 180.02562 * 24 23 21 44 44 H 1.08998 * 113.61879 * 270.88747 * 25 21 20 45 45 H 1.08997 * 113.69304 * 139.98833 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6264 -1.5514 -3.8526 9 14 1.2480 0.3988 -5.2571 10 1 2.2269 1.4398 -5.6615 11 1 1.0823 -0.5803 -6.3613 12 1 -0.0597 1.0371 -4.9612 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5768 -1.4793 3.7810 17 7 1.4288 0.1447 4.7700 18 6 1.7828 -0.3558 6.1005 19 1 2.0367 -1.4158 6.1014 20 6 2.8070 0.5236 6.8371 21 6 1.9863 0.2735 8.1133 22 1 2.2950 -0.6142 8.6656 23 6 1.8473 1.5092 9.0047 24 8 2.9598 1.5792 9.8988 25 6 0.7760 0.0374 7.1945 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2492 34 1 2.8607 -1.8828 -4.7337 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7490 1.2492 37 1 0.9942 0.7581 2.3564 38 1 0.8708 0.9331 4.6809 39 1 3.8079 0.0935 6.8704 40 1 2.8029 1.5641 6.5123 41 1 1.8236 2.4046 8.3834 42 1 0.9233 1.4409 9.5789 43 1 2.9375 2.3397 10.4956 44 1 0.2166 0.9449 6.9673 45 1 0.1365 -0.7849 7.5152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602318561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:03 Heat of formation + Delta-G solvation = -82.865315 kcal Electronic energy + Delta-G solvation = -22460.448796 eV Core-core repulsion = 19091.876798 eV Total energy + Delta-G solvation = -3368.571998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34378 -39.02489 -37.17957 -36.53178 -33.67843 -33.16033 -31.92959 -28.18596 -27.05924 -26.49757 -26.03042 -25.93928 -23.22951 -22.18141 -20.64850 -20.00729 -18.71179 -17.74424 -17.48498 -16.58944 -16.24515 -15.71957 -15.33401 -14.89910 -14.73839 -14.44066 -13.99652 -13.76268 -13.65966 -13.02307 -12.80034 -12.73857 -12.66291 -12.11641 -12.05450 -11.96272 -11.49860 -11.16349 -11.01790 -10.96113 -10.84690 -10.79925 -10.62468 -10.38100 -10.25629 -10.23251 -9.99020 -9.85887 -9.18608 -9.09969 -8.91368 -8.52716 -8.34927 -5.98868 -4.00129 2.87728 3.31319 3.38336 3.39606 3.39991 3.75844 4.19810 4.28275 4.44224 4.50696 4.62848 4.66058 4.99108 5.05018 5.16189 5.36155 5.36568 5.43943 5.49707 5.56913 5.66465 5.76592 5.76858 5.82345 6.06520 6.19298 6.24114 6.31390 6.43451 6.54729 6.62083 6.64209 6.82512 7.07339 7.09057 7.09277 7.17714 7.22739 7.65832 7.78416 7.99885 8.21612 8.41740 8.82255 9.04671 9.62793 11.12559 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.047467 B = 0.002511 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.743148 B =11146.408572 C =11281.876713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.699 3.301 16 O -0.594 6.594 17 N -0.741 5.741 18 C 0.145 3.855 19 H 0.116 0.884 20 C -0.146 4.146 21 C -0.110 4.110 22 H 0.101 0.899 23 C 0.088 3.912 24 O -0.573 6.573 25 C -0.139 4.139 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.378 0.622 44 H 0.086 0.914 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 8.264 23.878 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.023 3.977 14 N -0.392 5.392 15 C 0.399 3.601 16 O -0.472 6.472 17 N -0.396 5.396 18 C 0.039 3.961 19 H 0.134 0.866 20 C -0.185 4.185 21 C -0.129 4.129 22 H 0.119 0.881 23 C 0.010 3.990 24 O -0.378 6.378 25 C -0.178 4.178 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.228 0.772 38 H 0.227 0.773 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.225 0.775 44 H 0.105 0.895 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.211 6.650 23.474 24.759 hybrid contribution -0.991 1.720 -0.741 2.119 sum -5.202 8.370 22.733 24.777 Atomic orbital electron populations 1.21751 0.95336 1.01140 1.00103 1.20908 0.95429 0.95844 0.95072 1.21751 1.00549 0.95932 1.00092 1.19095 0.96398 0.95258 0.89444 1.21179 1.31175 1.12006 0.90519 0.92285 1.25021 0.95373 0.95088 0.99091 1.69968 1.36962 1.22998 1.23415 0.86645 0.79145 0.79401 0.83080 1.20795 1.21358 1.19979 1.21484 0.98662 0.95631 0.81905 1.45384 1.56087 1.33134 1.04618 1.16080 0.80411 0.82950 0.80656 1.90910 1.42720 1.27634 1.85968 1.45115 1.56938 1.32819 1.04702 1.22249 0.94918 0.99696 0.79228 0.86591 1.23561 0.99459 1.00839 0.94614 1.22337 0.97543 0.98613 0.94393 0.88105 1.22169 0.88342 0.97225 0.91277 1.86510 1.46921 1.51693 1.52719 1.23381 0.96592 1.02309 0.95476 0.95341 0.91500 0.93373 0.93371 0.91517 0.95339 0.96304 0.96292 0.93047 0.92045 0.92044 0.77228 0.77295 0.90780 0.89840 0.93510 0.93597 0.77541 0.89532 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.55 7.65 -34.44 -0.26 -13.82 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.15 2.65 4.56 -4.04 -0.02 2.63 16 14 N -0.74 -10.88 4.96 -65.22 -0.32 -11.20 16 15 C 0.70 10.86 8.57 -86.92 -0.74 10.11 16 16 O -0.59 -11.88 15.94 5.29 0.08 -11.79 16 17 N -0.74 -8.10 5.36 -57.88 -0.31 -8.41 16 18 C 0.15 1.45 4.24 -67.12 -0.28 1.17 16 19 H 0.12 1.40 7.47 -51.93 -0.39 1.02 16 20 C -0.15 -1.34 7.43 -25.92 -0.19 -1.54 16 21 C -0.11 -0.83 4.01 -89.81 -0.36 -1.19 16 22 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 23 C 0.09 0.56 6.88 37.16 0.26 0.82 16 24 O -0.57 -4.38 13.66 -35.23 -0.48 -4.86 16 25 C -0.14 -0.95 7.39 -25.92 -0.19 -1.14 16 26 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 31 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.39 4.79 6.18 -40.82 -0.25 4.54 16 38 H 0.39 3.13 8.74 -40.82 -0.36 2.77 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.73 7.90 -51.93 -0.41 0.32 16 41 H 0.05 0.26 7.84 -51.92 -0.41 -0.15 16 42 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.38 1.15 9.12 45.56 0.42 1.57 16 44 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -33.41 358.62 -8.28 -41.69 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.88 Total: 4.73 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.49 Total: -6.01 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.10 Total: -45.36 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.40 Total: -16.65 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.41 -8.28 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602318561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.172 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds