Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47031 * 2 1 4 4 C 1.52998 * 109.47155 * 240.00139 * 2 1 3 5 5 C 1.50702 * 109.47114 * 59.99594 * 4 2 1 6 6 H 1.08001 * 119.99827 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99799 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00036 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99672 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47303 * 90.00060 * 9 7 5 11 11 H 1.48504 * 109.46969 * 209.99910 * 9 7 5 12 12 H 1.48498 * 109.47176 * 329.99300 * 9 7 5 13 13 C 1.53005 * 109.47291 * 119.99867 * 2 1 3 14 14 N 1.46498 * 109.47130 * 300.00455 * 13 2 1 15 15 C 1.34773 * 119.99945 * 180.02562 * 14 13 2 16 16 O 1.21586 * 119.99898 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00158 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00015 * 179.97438 * 17 15 14 19 19 H 1.09004 * 112.90889 * 336.25053 * 18 17 15 20 20 C 1.53784 * 113.61524 * 107.50411 * 18 17 15 21 21 C 1.53778 * 87.08081 * 139.98080 * 20 18 17 22 22 H 1.08999 * 113.69218 * 89.12660 * 21 20 18 23 23 C 1.53001 * 113.61526 * 220.01868 * 21 20 18 24 24 O 1.42901 * 109.47278 * 272.50133 * 23 21 20 25 25 C 1.53778 * 87.08449 * 334.56700 * 21 20 18 26 26 H 1.09000 * 109.47052 * 299.99436 * 1 2 3 27 27 H 1.09000 * 109.47392 * 60.00167 * 1 2 3 28 28 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47192 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46896 * 300.00136 * 3 2 1 31 31 H 1.09000 * 109.47097 * 59.99963 * 3 2 1 32 32 H 1.09005 * 109.47209 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46881 * 299.99811 * 4 2 1 34 34 H 0.97008 * 119.99775 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47021 * 179.97438 * 13 2 1 36 36 H 1.09006 * 109.46634 * 60.00420 * 13 2 1 37 37 H 0.96998 * 120.00087 * 359.97438 * 14 13 2 38 38 H 0.96998 * 119.99607 * 0.02562 * 17 15 14 39 39 H 1.08993 * 113.61313 * 254.52676 * 20 18 17 40 40 H 1.09000 * 113.61578 * 25.43408 * 20 18 17 41 41 H 1.09008 * 109.46870 * 32.49758 * 23 21 20 42 42 H 1.09000 * 109.47055 * 152.49586 * 23 21 20 43 43 H 0.96697 * 114.00075 * 180.02562 * 24 23 21 44 44 H 1.08998 * 113.61879 * 270.88747 * 25 21 20 45 45 H 1.08997 * 113.69304 * 139.98833 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6264 -1.5514 -3.8526 9 14 1.2480 0.3988 -5.2571 10 1 2.2269 1.4398 -5.6615 11 1 1.0823 -0.5803 -6.3613 12 1 -0.0597 1.0371 -4.9612 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5768 -1.4793 3.7810 17 7 1.4288 0.1447 4.7700 18 6 1.7828 -0.3558 6.1005 19 1 2.0367 -1.4158 6.1014 20 6 2.8070 0.5236 6.8371 21 6 1.9863 0.2735 8.1133 22 1 2.2950 -0.6142 8.6656 23 6 1.8473 1.5092 9.0047 24 8 2.9598 1.5792 9.8988 25 6 0.7760 0.0374 7.1945 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2492 34 1 2.8607 -1.8828 -4.7337 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7490 1.2492 37 1 0.9942 0.7581 2.3564 38 1 0.8708 0.9331 4.6809 39 1 3.8079 0.0935 6.8704 40 1 2.8029 1.5641 6.5123 41 1 1.8236 2.4046 8.3834 42 1 0.9233 1.4409 9.5789 43 1 2.9375 2.3397 10.4956 44 1 0.2166 0.9449 6.9673 45 1 0.1365 -0.7849 7.5152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602318561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -108.488048 kcal Electronic energy + Delta-G solvation = -22461.559881 eV Core-core repulsion = 19091.876798 eV Total energy + Delta-G solvation = -3369.683083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37965 -40.00265 -38.61281 -37.17883 -35.23349 -34.50350 -33.57327 -29.22015 -28.70350 -27.93982 -27.35374 -26.64054 -24.95265 -23.22470 -21.80184 -20.77388 -20.06274 -18.94195 -18.35757 -18.14852 -17.48693 -16.57754 -16.53324 -16.42564 -15.84711 -15.57783 -15.34458 -15.06232 -14.71032 -14.37058 -14.32494 -13.92196 -13.87945 -13.39504 -13.28622 -12.85707 -12.71144 -12.63231 -12.56476 -12.31941 -12.21849 -12.21097 -11.95642 -11.66146 -11.51716 -11.40774 -11.35830 -10.95921 -10.84076 -10.74054 -10.50327 -10.28753 -9.68912 -8.12725 -6.20611 1.43386 1.44006 1.54304 1.75915 2.16650 2.45327 3.21647 3.24399 3.41585 3.54216 3.76210 3.90908 3.99856 4.08286 4.11396 4.24781 4.48922 4.49922 4.69696 4.70864 4.75374 4.76649 4.77892 4.86682 4.87357 4.98929 5.08680 5.13010 5.13980 5.14439 5.36096 5.42498 5.50608 5.52001 5.55881 5.60755 5.67448 5.82431 5.91283 6.07467 6.32195 6.94525 6.96318 7.16913 7.47019 7.63340 8.99850 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.047467 B = 0.002511 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.743148 B =11146.408572 C =11281.876713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.121 4.121 4 C 0.038 3.962 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.258 1.258 13 C 0.162 3.838 14 N -0.723 5.723 15 C 0.696 3.304 16 O -0.644 6.644 17 N -0.718 5.718 18 C 0.130 3.870 19 H 0.087 0.913 20 C -0.146 4.146 21 C -0.108 4.108 22 H 0.088 0.912 23 C 0.087 3.913 24 O -0.599 6.599 25 C -0.116 4.116 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.071 0.929 32 H -0.015 1.015 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.410 0.590 38 H 0.413 0.587 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.396 0.604 44 H 0.113 0.887 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 11.302 25.341 28.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.205 4.205 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.182 1.182 13 C 0.036 3.964 14 N -0.380 5.380 15 C 0.395 3.605 16 O -0.526 6.526 17 N -0.374 5.374 18 C 0.025 3.975 19 H 0.105 0.895 20 C -0.185 4.185 21 C -0.127 4.127 22 H 0.107 0.893 23 C 0.010 3.990 24 O -0.408 6.408 25 C -0.155 4.155 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.003 0.997 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.248 0.752 38 H 0.251 0.749 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.246 0.754 44 H 0.131 0.869 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.660 9.769 24.989 27.644 hybrid contribution -0.190 0.746 -1.106 1.347 sum -6.850 10.515 23.883 26.979 Atomic orbital electron populations 1.21684 0.93463 1.00942 1.01676 1.20698 0.96782 0.96295 0.92562 1.21686 0.99815 0.94593 1.01683 1.18987 0.94258 0.94249 0.92432 1.21589 1.30379 1.12016 0.90980 0.90792 1.25983 0.95749 0.95894 1.02825 1.70132 1.38848 1.25011 1.24054 0.85516 0.79196 0.78056 0.78685 1.20188 1.21682 1.18219 1.21034 0.97316 0.94943 0.83064 1.45003 1.56163 1.33355 1.03440 1.16275 0.80072 0.82594 0.81515 1.90886 1.44999 1.30059 1.86692 1.44929 1.56037 1.32744 1.03675 1.22389 0.97300 0.98494 0.79360 0.89453 1.23570 0.98217 1.00930 0.95781 1.22291 0.97305 0.99077 0.93996 0.89317 1.22213 0.88697 0.96727 0.91363 1.86459 1.47707 1.53159 1.53485 1.23293 0.95819 1.03594 0.92744 0.91039 0.92529 0.94541 0.94628 0.92487 0.91064 0.99685 0.99611 0.93218 0.94179 0.94058 0.75185 0.74941 0.93172 0.88719 0.92224 0.91744 0.75405 0.86896 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 2 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 4 C 0.04 1.97 4.04 29.85 0.12 2.09 16 5 C -0.51 -27.40 7.65 25.60 0.20 -27.20 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 7 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 8 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 9 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 13 C 0.16 5.92 4.56 86.38 0.39 6.32 16 14 N -0.72 -20.13 4.96 -478.53 -2.37 -22.50 16 15 C 0.70 21.00 8.57 179.06 1.53 22.54 16 16 O -0.64 -26.44 15.94 -3.99 -0.06 -26.51 16 17 N -0.72 -14.14 5.36 -455.29 -2.44 -16.58 16 18 C 0.13 2.45 4.24 45.52 0.19 2.64 16 19 H 0.09 2.19 7.47 -2.39 -0.02 2.17 16 20 C -0.15 -2.54 7.43 31.12 0.23 -2.30 16 21 C -0.11 -1.42 4.01 -10.27 -0.04 -1.47 16 22 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 23 C 0.09 0.86 6.88 71.98 0.50 1.35 16 24 O -0.60 -7.99 13.66 -148.98 -2.04 -10.03 16 25 C -0.12 -1.23 7.39 31.12 0.23 -1.00 16 26 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 27 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 31 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 32 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 33 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.41 8.43 6.18 -92.71 -0.57 7.86 16 38 H 0.41 4.92 8.74 -92.71 -0.81 4.11 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.43 7.90 -2.39 -0.02 1.41 16 41 H 0.06 0.44 7.84 -2.38 -0.02 0.42 16 42 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.40 1.58 9.12 -74.06 -0.68 0.90 16 44 H 0.11 0.66 8.08 -2.39 -0.02 0.64 16 45 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -76.46 358.62 -0.71 -77.18 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -1.06 Total: 16.30 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 4.95 Total: -6.23 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -4.53 Total: -96.32 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -2.10 Total: -36.53 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -76.46 -0.71 -77.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602318561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.311 kcal (2) G-P(sol) polarization free energy of solvation -76.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds