Wall clock time and date at job start Tue Mar 31 2020 06:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99778 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00221 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99728 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99794 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47065 * 35.00521 * 9 8 6 11 11 C 1.52998 * 109.47281 * 274.99890 * 9 8 6 12 12 C 1.52999 * 109.47290 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47085 * 60.00103 * 12 11 9 14 14 C 1.53000 * 109.47283 * 300.00307 * 13 12 11 15 15 C 1.52999 * 109.47311 * 59.99831 * 14 13 12 16 16 H 1.08999 * 109.47026 * 59.99780 * 15 14 13 17 17 N 1.46495 * 109.47369 * 180.02562 * 15 14 13 18 18 C 1.36940 * 119.99950 * 275.00132 * 17 15 14 19 19 H 1.07996 * 119.99620 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00127 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00010 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00151 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47069 * 90.00186 * 22 20 18 24 24 H 1.48500 * 109.46988 * 210.00491 * 22 20 18 25 25 H 1.48504 * 109.46996 * 330.00308 * 22 20 18 26 26 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 28 28 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 29 29 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 30 30 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 31 31 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 32 32 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 33 33 H 1.08997 * 109.47171 * 299.99768 * 5 4 3 34 34 H 1.08997 * 109.47442 * 59.99964 * 5 4 3 35 35 H 0.96996 * 119.99888 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.47587 * 300.00312 * 11 9 8 37 37 H 1.09002 * 109.47148 * 60.00200 * 11 9 8 38 38 H 1.09000 * 109.47396 * 180.02562 * 12 11 9 39 39 H 1.09007 * 109.46930 * 300.00291 * 12 11 9 40 40 H 1.09002 * 109.47404 * 59.99963 * 13 12 11 41 41 H 1.08999 * 109.47190 * 180.02562 * 13 12 11 42 42 H 1.09002 * 109.47459 * 179.97438 * 14 13 12 43 43 H 1.09007 * 109.47039 * 300.00000 * 14 13 12 44 44 H 0.96997 * 120.00529 * 94.99396 * 17 15 14 45 45 H 0.97003 * 120.00324 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 6 5.5526 2.6288 -0.0012 7 8 6.0741 1.5339 -0.0002 8 7 6.3166 3.7392 -0.0023 9 6 7.7770 3.6234 -0.0017 10 1 8.0729 2.7549 -0.5901 11 6 8.2751 3.4595 1.4357 12 6 9.8003 3.3393 1.4364 13 6 10.4117 4.6018 0.8257 14 6 9.9137 4.7658 -0.6117 15 6 8.3884 4.8861 -0.6124 16 1 8.0922 5.7544 -0.0238 17 7 7.9115 5.0425 -1.9886 18 6 7.8784 6.2843 -2.5649 19 1 8.2036 7.1484 -2.0045 20 6 7.4260 6.4327 -3.8687 21 7 7.3938 7.6263 -4.4224 22 14 6.8629 4.9382 -4.8377 23 1 5.4092 4.7267 -4.6209 24 1 7.1208 5.1596 -6.2833 25 1 7.6112 3.7402 -4.3792 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.7284 3.2885 -0.8912 34 1 3.7291 3.2891 0.8887 35 1 5.8995 4.6148 -0.0027 36 1 7.9792 4.3280 2.0241 37 1 7.8392 2.5602 1.8709 38 1 10.1551 3.2220 2.4603 39 1 10.0966 2.4708 0.8479 40 1 10.1155 5.4702 1.4141 41 1 11.4983 4.5160 0.8257 42 1 10.3489 5.6656 -1.0466 43 1 10.2099 3.8974 -1.2002 44 1 7.6191 4.2665 -2.4919 45 1 7.0780 7.7300 -5.3337 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225211430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:55 Heat of formation + Delta-G solvation = -94.505878 kcal Electronic energy + Delta-G solvation = -23189.591749 eV Core-core repulsion = 19820.514979 eV Total energy + Delta-G solvation = -3369.076771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90102 -38.39525 -37.37187 -34.19212 -33.87068 -33.80530 -31.38752 -29.92717 -28.64984 -27.48016 -25.63148 -23.50194 -22.25011 -21.75663 -21.00241 -20.23270 -19.58868 -17.83518 -17.05904 -16.65748 -16.58418 -15.64933 -15.14820 -15.04911 -14.58185 -14.28185 -13.97089 -13.62430 -13.52557 -13.34076 -13.14727 -12.66678 -12.46420 -12.32971 -12.27207 -12.13082 -12.08933 -11.39085 -11.12647 -11.09996 -11.03221 -10.92767 -10.87546 -10.61426 -10.37632 -10.13974 -9.82223 -9.79065 -9.63601 -9.51472 -8.97686 -8.71284 -7.33136 -5.82803 -3.18660 2.81680 2.92873 3.33887 3.40774 3.43320 3.96731 4.54666 4.72577 4.76114 4.88762 4.91410 5.03314 5.09005 5.10668 5.17965 5.23607 5.26741 5.28806 5.41208 5.45360 5.48971 5.58084 5.66680 5.73145 5.76398 5.85698 5.89662 5.90341 5.98013 6.03575 6.23533 6.36243 6.38217 6.41395 6.45668 6.75203 6.80097 6.92101 7.02321 7.78224 7.92720 8.36116 8.46544 9.14361 9.87316 10.06975 11.35207 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.011932 B = 0.005066 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.006343 B = 5525.673985 C = 7449.681983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.043 3.957 6 C 0.513 3.487 7 O -0.529 6.529 8 N -0.711 5.711 9 C 0.139 3.861 10 H 0.084 0.916 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.119 4.119 14 C -0.133 4.133 15 C 0.178 3.822 16 H 0.060 0.940 17 N -0.747 5.747 18 C -0.244 4.244 19 H 0.091 0.909 20 C 0.009 3.991 21 N -0.932 5.932 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.405 0.595 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 -9.865 13.046 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.283 6.283 5 C -0.037 4.037 6 C 0.298 3.702 7 O -0.405 6.405 8 N -0.363 5.363 9 C 0.034 3.966 10 H 0.102 0.898 11 C -0.163 4.163 12 C -0.153 4.153 13 C -0.158 4.158 14 C -0.174 4.174 15 C 0.068 3.932 16 H 0.078 0.922 17 N -0.389 5.389 18 C -0.374 4.374 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.580 5.580 22 Si 0.710 3.290 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.203 1.203 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.240 0.760 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.829 -10.573 12.969 18.072 hybrid contribution -0.778 -0.218 -0.948 1.246 sum -7.608 -10.791 12.021 17.856 Atomic orbital electron populations 1.21698 0.94759 1.02194 1.02005 1.21444 0.95515 0.95540 1.03597 1.22626 0.80793 0.98124 1.00268 1.87991 1.19318 1.25521 1.95455 1.22223 0.92136 0.86655 1.02685 1.20158 0.88446 0.84839 0.76745 1.90694 1.74613 1.26550 1.48662 1.45862 1.07072 1.08683 1.74637 1.21357 0.78470 1.00476 0.96285 0.89835 1.21864 0.95978 1.01904 0.96519 1.21483 0.94707 0.98612 1.00453 1.21577 0.99531 0.97453 0.97195 1.22189 0.97870 1.02388 0.94982 1.20444 0.91920 0.94074 0.86728 0.92176 1.42804 1.78463 1.06826 1.10830 1.19042 1.36718 0.85120 0.96478 0.89110 1.24632 1.01332 0.95899 0.96888 1.69694 1.52913 1.20716 1.14661 0.86623 0.78783 0.83492 0.80053 1.21192 1.21723 1.20321 0.92041 0.92566 0.92480 0.90977 0.91058 0.93254 0.93125 0.90066 0.90427 0.76029 0.91805 0.91829 0.92235 0.91994 0.92160 0.92494 0.91072 0.92537 0.80529 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 2 C -0.12 -1.17 6.30 -26.73 -0.17 -1.34 16 3 C 0.06 0.62 5.94 37.16 0.22 0.84 16 4 O -0.36 -5.33 9.88 -55.14 -0.54 -5.87 16 5 C 0.04 0.56 6.42 36.01 0.23 0.79 16 6 C 0.51 8.42 7.87 -10.98 -0.09 8.33 16 7 O -0.53 -10.73 16.16 -14.35 -0.23 -10.96 16 8 N -0.71 -10.87 4.91 -53.80 -0.26 -11.14 16 9 C 0.14 2.24 1.98 -67.93 -0.13 2.11 16 10 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 11 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 12 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 13 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 14 C -0.13 -2.22 5.50 -26.73 -0.15 -2.37 16 15 C 0.18 3.19 2.29 -67.93 -0.16 3.03 16 16 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 17 N -0.75 -16.72 4.76 -53.43 -0.25 -16.97 16 18 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 21 N -0.93 -28.48 13.97 55.49 0.78 -27.70 16 22 Si 0.88 22.03 27.74 -169.99 -4.71 17.32 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.40 5.61 8.60 -40.82 -0.35 5.26 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 44 H 0.36 8.40 5.66 -40.82 -0.23 8.17 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -32.74 362.31 -8.54 -41.28 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.17 Total: 9.53 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.59 Total: -0.94 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.26 Total: -55.81 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.78 Total: -16.83 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.74 -8.54 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225211430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.226 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds