Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99778 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00221 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99728 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99794 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47065 * 35.00521 * 9 8 6 11 11 C 1.52998 * 109.47281 * 274.99890 * 9 8 6 12 12 C 1.52999 * 109.47290 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47085 * 60.00103 * 12 11 9 14 14 C 1.53000 * 109.47283 * 300.00307 * 13 12 11 15 15 C 1.52999 * 109.47311 * 59.99831 * 14 13 12 16 16 H 1.08999 * 109.47026 * 59.99780 * 15 14 13 17 17 N 1.46495 * 109.47369 * 180.02562 * 15 14 13 18 18 C 1.36940 * 119.99950 * 275.00132 * 17 15 14 19 19 H 1.07996 * 119.99620 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00127 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00010 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00151 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47069 * 90.00186 * 22 20 18 24 24 H 1.48500 * 109.46988 * 210.00491 * 22 20 18 25 25 H 1.48504 * 109.46996 * 330.00308 * 22 20 18 26 26 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 28 28 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 29 29 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 30 30 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 31 31 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 32 32 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 33 33 H 1.08997 * 109.47171 * 299.99768 * 5 4 3 34 34 H 1.08997 * 109.47442 * 59.99964 * 5 4 3 35 35 H 0.96996 * 119.99888 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.47587 * 300.00312 * 11 9 8 37 37 H 1.09002 * 109.47148 * 60.00200 * 11 9 8 38 38 H 1.09000 * 109.47396 * 180.02562 * 12 11 9 39 39 H 1.09007 * 109.46930 * 300.00291 * 12 11 9 40 40 H 1.09002 * 109.47404 * 59.99963 * 13 12 11 41 41 H 1.08999 * 109.47190 * 180.02562 * 13 12 11 42 42 H 1.09002 * 109.47459 * 179.97438 * 14 13 12 43 43 H 1.09007 * 109.47039 * 300.00000 * 14 13 12 44 44 H 0.96997 * 120.00529 * 94.99396 * 17 15 14 45 45 H 0.97003 * 120.00324 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 6 5.5526 2.6288 -0.0012 7 8 6.0741 1.5339 -0.0002 8 7 6.3166 3.7392 -0.0023 9 6 7.7770 3.6234 -0.0017 10 1 8.0729 2.7549 -0.5901 11 6 8.2751 3.4595 1.4357 12 6 9.8003 3.3393 1.4364 13 6 10.4117 4.6018 0.8257 14 6 9.9137 4.7658 -0.6117 15 6 8.3884 4.8861 -0.6124 16 1 8.0922 5.7544 -0.0238 17 7 7.9115 5.0425 -1.9886 18 6 7.8784 6.2843 -2.5649 19 1 8.2036 7.1484 -2.0045 20 6 7.4260 6.4327 -3.8687 21 7 7.3938 7.6263 -4.4224 22 14 6.8629 4.9382 -4.8377 23 1 5.4092 4.7267 -4.6209 24 1 7.1208 5.1596 -6.2833 25 1 7.6112 3.7402 -4.3792 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.7284 3.2885 -0.8912 34 1 3.7291 3.2891 0.8887 35 1 5.8995 4.6148 -0.0027 36 1 7.9792 4.3280 2.0241 37 1 7.8392 2.5602 1.8709 38 1 10.1551 3.2220 2.4603 39 1 10.0966 2.4708 0.8479 40 1 10.1155 5.4702 1.4141 41 1 11.4983 4.5160 0.8257 42 1 10.3489 5.6656 -1.0466 43 1 10.2099 3.8974 -1.2002 44 1 7.6191 4.2665 -2.4919 45 1 7.0780 7.7300 -5.3337 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225211430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -116.225647 kcal Electronic energy + Delta-G solvation = -23190.533589 eV Core-core repulsion = 19820.514979 eV Total energy + Delta-G solvation = -3370.018610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18699 -39.57563 -38.51869 -35.94132 -35.15837 -34.59649 -33.33942 -31.11660 -30.10201 -28.60469 -26.46912 -25.32258 -23.48921 -22.51464 -22.46882 -21.51388 -20.87872 -19.71801 -18.19756 -17.93048 -17.50516 -16.89244 -16.71701 -16.14362 -16.07904 -15.48575 -15.18647 -14.91428 -14.69235 -14.67104 -14.50234 -14.33166 -13.72340 -13.67545 -13.11483 -13.08191 -13.04890 -12.93182 -12.89754 -12.41073 -12.17793 -12.08886 -11.86826 -11.83784 -11.80908 -11.72034 -11.48859 -11.15575 -11.03629 -10.75176 -10.70648 -10.01957 -9.31601 -8.02387 -5.34203 1.33739 1.37233 1.42309 1.56321 1.83667 2.45418 2.97213 3.29431 3.44977 3.69101 3.79891 4.00897 4.08359 4.11188 4.16906 4.20616 4.24169 4.26853 4.39760 4.40935 4.46348 4.54586 4.57261 4.62341 4.66621 4.83851 4.93751 4.99452 5.12775 5.13538 5.21186 5.22535 5.27587 5.29812 5.33430 5.45039 5.52039 5.63113 5.79171 6.07275 6.21877 6.56935 7.06683 7.22459 7.83042 8.01074 9.18970 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.011932 B = 0.005066 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.006343 B = 5525.673985 C = 7449.681983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.053 3.947 4 O -0.398 6.398 5 C 0.046 3.954 6 C 0.508 3.492 7 O -0.574 6.574 8 N -0.706 5.706 9 C 0.146 3.854 10 H 0.058 0.942 11 C -0.115 4.115 12 C -0.111 4.111 13 C -0.110 4.110 14 C -0.131 4.131 15 C 0.177 3.823 16 H 0.065 0.935 17 N -0.749 5.749 18 C -0.216 4.216 19 H 0.068 0.932 20 C -0.053 4.053 21 N -0.980 5.980 22 Si 0.939 3.061 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.270 1.270 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.413 0.587 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.359 0.641 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -10.605 14.886 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.023 4.023 4 O -0.317 6.317 5 C -0.034 4.034 6 C 0.295 3.705 7 O -0.453 6.453 8 N -0.357 5.357 9 C 0.040 3.960 10 H 0.077 0.923 11 C -0.154 4.154 12 C -0.149 4.149 13 C -0.148 4.148 14 C -0.171 4.171 15 C 0.068 3.932 16 H 0.083 0.917 17 N -0.391 5.391 18 C -0.347 4.347 19 H 0.086 0.914 20 C -0.245 4.245 21 N -0.631 5.631 22 Si 0.769 3.231 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.195 1.195 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.249 0.751 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.191 0.809 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.589 -11.322 14.860 20.164 hybrid contribution -0.499 0.031 -1.439 1.524 sum -8.088 -11.291 13.420 19.313 Atomic orbital electron populations 1.21669 0.92790 1.02958 1.02695 1.21481 0.97161 0.94940 1.02640 1.22863 0.78912 0.98965 1.01590 1.87954 1.21539 1.26477 1.95760 1.22289 0.89488 0.86720 1.04865 1.20808 0.89999 0.84123 0.75547 1.90670 1.75696 1.28150 1.50832 1.45855 1.06790 1.09054 1.74032 1.21218 0.79069 0.98076 0.97618 0.92331 1.21804 0.96781 1.02380 0.94432 1.21484 0.93667 0.97837 1.01900 1.21514 1.00537 0.98324 0.94456 1.22084 0.96539 1.00900 0.97590 1.20655 0.92863 0.95235 0.84411 0.91733 1.42841 1.78682 1.05091 1.12525 1.19006 1.33834 0.85951 0.95925 0.91437 1.25241 1.02927 0.98096 0.98196 1.69838 1.55411 1.22848 1.14956 0.85655 0.78693 0.80660 0.78118 1.20385 1.22571 1.19537 0.91305 0.91517 0.92104 0.92384 0.91637 0.91205 0.92372 0.88909 0.86894 0.75050 0.90060 0.92361 0.89493 0.92666 0.91029 0.90833 0.93246 0.93425 0.80877 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.12 -2.23 6.30 30.60 0.19 -2.03 16 3 C 0.05 1.02 5.94 71.98 0.43 1.45 16 4 O -0.40 -11.15 9.88 -129.94 -1.28 -12.43 16 5 C 0.05 1.10 6.42 71.24 0.46 1.56 16 6 C 0.51 16.13 7.87 87.66 0.69 16.82 16 7 O -0.57 -23.23 16.16 16.02 0.26 -22.97 16 8 N -0.71 -20.60 4.91 -442.52 -2.17 -22.77 16 9 C 0.15 4.53 1.98 44.99 0.09 4.61 16 10 H 0.06 2.15 7.58 -2.39 -0.02 2.13 16 11 C -0.11 -2.86 5.49 30.59 0.17 -2.69 16 12 C -0.11 -2.45 5.92 30.59 0.18 -2.27 16 13 C -0.11 -2.61 5.92 30.59 0.18 -2.42 16 14 C -0.13 -4.22 5.50 30.59 0.17 -4.05 16 15 C 0.18 6.14 2.29 44.99 0.10 6.24 16 16 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 17 N -0.75 -33.18 4.76 -322.95 -1.54 -34.72 16 18 C -0.22 -11.58 10.41 84.03 0.87 -10.70 16 19 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 20 C -0.05 -3.01 5.50 84.86 0.47 -2.54 16 21 N -0.98 -60.96 13.97 21.65 0.30 -60.65 16 22 Si 0.94 45.83 27.74 68.60 1.90 47.74 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 25 H -0.27 -12.65 6.52 99.48 0.65 -12.00 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.41 10.68 8.60 -92.71 -0.80 9.88 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.36 16.40 5.66 -92.71 -0.52 15.87 16 45 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -71.82 362.31 1.76 -70.05 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.42 Total: 32.85 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 4.71 Total: 2.91 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -3.41 Total: -118.15 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.02 Total: -35.40 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.74 kcal Total: -71.82 1.76 -70.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225211430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.175 kcal (2) G-P(sol) polarization free energy of solvation -71.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds