Wall clock time and date at job start Tue Mar 31 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47001 * 2 1 4 4 N 1.46898 * 109.46999 * 119.99716 * 2 1 3 5 5 C 1.46849 * 110.99323 * 303.36496 * 4 2 1 6 6 C 1.53033 * 109.51529 * 185.85081 * 5 4 2 7 7 C 1.53120 * 109.27897 * 300.81239 * 6 5 4 8 8 C 1.53123 * 109.16032 * 57.65698 * 7 6 5 9 9 C 1.46848 * 111.00260 * 67.56636 * 4 2 1 10 10 H 1.09001 * 109.46660 * 294.16706 * 9 4 2 11 11 C 1.53003 * 109.45935 * 54.14372 * 9 4 2 12 12 N 1.46498 * 109.46949 * 186.25189 * 11 9 4 13 13 C 1.36940 * 119.99843 * 266.77879 * 12 11 9 14 14 H 1.07994 * 120.00223 * 16.02628 * 13 12 11 15 15 C 1.38820 * 119.99728 * 196.03032 * 13 12 11 16 16 N 1.31620 * 119.99953 * 15.08218 * 15 13 12 17 17 Si 1.86802 * 119.99651 * 195.07957 * 15 13 12 18 18 H 1.48495 * 109.47279 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46856 * 120.00243 * 17 15 13 20 20 H 1.48504 * 109.47069 * 239.99851 * 17 15 13 21 21 C 1.46501 * 120.00171 * 86.78213 * 12 11 9 22 22 C 1.50697 * 109.47289 * 83.45307 * 21 12 11 23 23 O 1.20825 * 119.99951 * 359.97438 * 22 21 12 24 24 O 1.34230 * 119.99719 * 180.02562 * 22 21 12 25 25 H 1.08996 * 109.47476 * 300.00198 * 1 2 3 26 26 H 1.08998 * 109.46842 * 60.00339 * 1 2 3 27 27 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47127 * 239.99386 * 2 1 3 29 29 H 1.09002 * 109.46754 * 301.35718 * 3 2 1 30 30 H 1.08995 * 109.47021 * 61.35768 * 3 2 1 31 31 H 1.09005 * 109.46879 * 181.36298 * 3 2 1 32 32 H 1.09004 * 109.47172 * 65.83341 * 5 4 2 33 33 H 1.09002 * 109.45110 * 305.85234 * 5 4 2 34 34 H 1.09005 * 109.50572 * 180.87695 * 6 5 4 35 35 H 1.08998 * 109.53977 * 60.77841 * 6 5 4 36 36 H 1.08999 * 109.52832 * 297.75124 * 7 6 5 37 37 H 1.09004 * 109.57543 * 177.59396 * 7 6 5 38 38 H 1.08991 * 109.50345 * 182.40580 * 8 7 6 39 39 H 1.08999 * 109.50204 * 62.28288 * 8 7 6 40 40 H 1.08999 * 109.47144 * 66.25082 * 11 9 4 41 41 H 1.09000 * 109.47242 * 306.25242 * 11 9 4 42 42 H 0.97001 * 119.99617 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.47140 * 203.45553 * 21 12 11 44 44 H 1.08996 * 109.46858 * 323.44870 * 21 12 11 45 45 H 0.96700 * 116.99990 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4841 -0.0744 2.4192 6 6 2.1265 -0.7249 3.6464 7 6 1.8259 -2.2263 3.6383 8 6 2.3508 -2.8370 2.3359 9 6 1.7018 -2.1251 1.1467 10 1 0.6209 -2.2592 1.1889 11 6 2.2385 -2.7186 -0.1574 12 7 1.7941 -4.1091 -0.2804 13 6 2.5934 -5.1258 0.1698 14 1 3.4148 -4.9117 0.8374 15 6 2.3479 -6.4316 -0.2321 16 7 1.5568 -6.6669 -1.2574 17 14 3.1403 -7.8549 0.6822 18 1 3.9785 -7.3271 1.7885 19 1 2.0823 -8.7352 1.2399 20 1 3.9893 -8.6338 -0.2547 21 6 0.4945 -4.4120 -0.8851 22 6 0.6329 -4.4403 -2.3855 23 8 1.7068 -4.2288 -2.8972 24 8 -0.4371 -4.6996 -3.1533 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6569 1.9633 -0.8776 30 1 1.6967 1.9492 0.9019 31 1 3.1298 1.4426 -0.0244 32 1 0.4042 -0.2182 2.4553 33 1 1.7085 0.9923 2.4142 34 1 1.7174 -0.2768 4.5519 35 1 3.2050 -0.5696 3.6187 36 1 0.7493 -2.3827 3.7060 37 1 2.3170 -2.7017 4.4874 38 1 2.1019 -3.8976 2.3051 39 1 3.4328 -2.7148 2.2869 40 1 3.3280 -2.6846 -0.1508 41 1 1.8622 -2.1408 -1.0016 42 1 1.3849 -7.5794 -1.5380 43 1 0.1479 -5.3838 -0.5338 44 1 -0.2259 -3.6450 -0.6011 45 1 -0.2993 -4.7067 -4.1104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609706891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:28 Heat of formation + Delta-G solvation = -67.756354 kcal Electronic energy + Delta-G solvation = -24838.542098 eV Core-core repulsion = 21470.625274 eV Total energy + Delta-G solvation = -3367.916824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.54200 -38.62210 -35.77405 -34.79287 -34.38536 -32.09184 -30.25142 -29.84672 -27.38335 -27.03913 -25.86234 -23.93957 -22.73822 -21.11423 -20.19541 -19.87595 -18.46757 -16.87005 -16.65403 -16.08925 -15.35163 -15.00285 -14.73317 -14.28111 -14.10552 -14.01146 -13.90321 -13.35153 -13.18386 -13.08253 -12.73448 -12.39847 -12.07190 -11.87017 -11.63960 -11.49341 -11.31649 -11.10185 -10.98456 -10.95721 -10.78452 -10.61493 -10.35615 -10.23509 -10.18551 -10.05021 -9.99730 -9.68546 -9.53474 -9.18732 -8.56573 -7.86701 -7.01882 -5.89336 -3.25555 3.35305 3.42943 3.44962 3.89385 4.11253 4.42081 4.56366 5.02843 5.09329 5.17878 5.27932 5.35351 5.37198 5.46617 5.52582 5.63866 5.68547 5.70398 5.79944 5.90501 5.96769 5.98714 6.02984 6.13559 6.17289 6.27455 6.30943 6.37530 6.39548 6.43438 6.54229 6.71436 6.76081 6.84130 7.02164 7.05806 7.16715 7.53059 7.59785 7.71314 7.85615 8.22713 9.04933 9.43614 9.72675 10.15003 11.20817 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.006837 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.605833 B = 4094.387029 C = 5430.977460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 C -0.141 4.141 4 N -0.526 5.526 5 C 0.054 3.946 6 C -0.115 4.115 7 C -0.122 4.122 8 C -0.105 4.105 9 C 0.069 3.931 10 H 0.036 0.964 11 C 0.153 3.847 12 N -0.565 5.565 13 C -0.241 4.241 14 H 0.083 0.917 15 C -0.005 4.005 16 N -0.915 5.915 17 Si 0.912 3.088 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.292 1.292 21 C 0.188 3.812 22 C 0.478 3.522 23 O -0.523 6.523 24 O -0.543 6.543 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.256 0.744 43 H 0.126 0.874 44 H 0.042 0.958 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 12.039 5.442 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.041 4.041 3 C -0.199 4.199 4 N -0.251 5.251 5 C -0.074 4.074 6 C -0.152 4.152 7 C -0.159 4.159 8 C -0.142 4.142 9 C -0.041 4.041 10 H 0.054 0.946 11 C 0.026 3.974 12 N -0.285 5.285 13 C -0.370 4.370 14 H 0.101 0.899 15 C -0.201 4.201 16 N -0.561 5.561 17 Si 0.742 3.258 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.219 1.219 21 C 0.059 3.941 22 C 0.319 3.681 23 O -0.409 6.409 24 O -0.353 6.353 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.144 0.856 44 H 0.060 0.940 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.868 11.981 5.713 13.580 hybrid contribution -0.370 -1.020 -0.510 1.199 sum -3.238 10.961 5.202 12.558 Atomic orbital electron populations 1.22448 0.98050 1.02212 1.01588 1.21804 0.92500 0.95056 0.94745 1.21845 1.01709 0.95341 1.00976 1.62145 1.58955 1.03079 1.00908 1.22082 0.96583 0.98356 0.90401 1.21574 1.01278 0.96037 0.96356 1.21619 1.00465 0.95150 0.98690 1.21605 1.00061 1.00780 0.91780 1.22307 0.97687 0.85532 0.98524 0.94640 1.20919 0.98584 0.85170 0.92682 1.43877 1.16998 1.01075 1.66540 1.19417 1.10763 0.85724 1.21120 0.89878 1.24875 1.00112 0.98160 0.96986 1.69793 1.41407 1.19564 1.25375 0.86052 0.78441 0.82250 0.79033 1.20208 1.21589 1.21895 1.20406 0.87347 1.02400 0.83963 1.25463 0.80718 0.69814 0.92146 1.90505 1.28513 1.46838 1.75092 1.84650 1.43114 1.85172 1.22408 0.92779 0.92572 0.92288 0.89118 0.92781 0.92974 0.92037 0.95209 0.91280 0.92593 0.91502 0.92871 0.92521 0.89317 0.92103 0.92341 0.94236 0.93336 0.85646 0.94025 0.76567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.48 37.16 0.32 -2.06 16 2 C 0.07 0.93 2.62 -67.71 -0.18 0.75 16 3 C -0.14 -1.62 9.10 37.16 0.34 -1.28 16 4 N -0.53 -7.81 4.46 -218.76 -0.98 -8.79 16 5 C 0.05 0.69 4.59 -3.84 -0.02 0.68 16 6 C -0.11 -1.43 6.09 -26.65 -0.16 -1.59 16 7 C -0.12 -1.70 6.00 -26.61 -0.16 -1.86 16 8 C -0.10 -1.77 4.76 -26.65 -0.13 -1.90 16 9 C 0.07 1.19 1.73 -67.72 -0.12 1.07 16 10 H 0.04 0.64 6.80 -51.93 -0.35 0.29 16 11 C 0.15 3.14 4.88 -4.04 -0.02 3.12 16 12 N -0.57 -13.34 1.89 -174.61 -0.33 -13.67 16 13 C -0.24 -6.22 8.16 -15.06 -0.12 -6.34 16 14 H 0.08 2.10 7.36 -52.49 -0.39 1.71 16 15 C 0.00 -0.13 5.05 -17.43 -0.09 -0.22 16 16 N -0.91 -25.51 9.07 55.49 0.50 -25.00 16 17 Si 0.91 21.35 29.58 -169.99 -5.03 16.32 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 C 0.19 4.36 5.50 -5.19 -0.03 4.34 16 22 C 0.48 11.54 6.61 36.00 0.24 11.78 16 23 O -0.52 -14.35 17.06 -18.75 -0.32 -14.67 16 24 O -0.54 -11.16 13.42 -39.26 -0.53 -11.68 16 25 H 0.05 0.65 6.48 -51.93 -0.34 0.31 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.86 6.73 -51.93 -0.35 0.51 16 28 H 0.09 1.42 5.65 -51.93 -0.29 1.13 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.55 6.29 -51.93 -0.33 0.23 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.39 6.59 -51.93 -0.34 0.05 16 33 H 0.07 0.81 6.09 -51.93 -0.32 0.49 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.72 6.48 -51.93 -0.34 1.38 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 41 H 0.04 0.82 5.76 -51.93 -0.30 0.52 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 43 H 0.13 3.16 6.05 -51.93 -0.31 2.85 16 44 H 0.04 0.85 8.12 -51.93 -0.42 0.43 16 45 H 0.38 6.21 9.10 45.56 0.41 6.62 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -29.89 339.34 -8.29 -38.17 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.59 Total: 7.74 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.13 Total: 6.47 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.80 Total: -47.46 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.85 Total: -26.36 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.89 -8.29 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609706891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.585 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds